Sed0013536 (gene) Chayote v1

Overview


Name	Sed0013536
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Thylakoid lumenal 15 kDa protein 1, chloroplastic
Location	LG11: 35712909 .. 35716686 (-)
RNA-Seq Expression	Sed0013536
Synteny	Sed0013536

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAGGAAAGCAAATCCAGAGCAAAAAATAGAAGCTTTTGGAAATGGGTCTGTTGAGCGCTTCATCATCATGTTGTTGCAGTTCCACAATTCCTCCAAAACCAAAACCTGGCCTTCATCTTCCTCCCACCGTTCCCGCCCTTCCAAACCCTCAGGTAAAAACTCCCAACTTCCATTTCCACTCTCAAATTTCTTCTCTCAATGTACACTCAAATCCTACATTCGAAGGTTCCAAAGCACAAAGTGGAAGCCGCTCGAAATTTGGTTCTTTCCATTGGAGAATCCGCCTCGAAAGCCAGCTTCCTCGCTTTGATTTCCGCCTCCTTGTTCCTCGCCGATCCTGCGCTTGCCTTTAAGGTTTGTTTTGCCCTCAAACTGTTTGATGAAATGTCTGCTTTGATTTGATCTTTGGTTGGGTTTGTATTTAGGGTGGAGGTCCTTATGGTGCCGGAGTCACTCGAGGCCAGGATCTTACCGGGAAGGATTTCAGTGGGAAGACGTTGATCAAGCAAGATTTCAAAACGGTTTCTCCCCCCCCTTTTCAAACTAATTTACTGTTTCTGATGTTGTACTTCACCGATGTGTGTTTCTCACATGGCCTTGTGTGTGTTGAAATGACTTTAAGGATGTTTGGAACATGGGCAATGAGAATGATTATGGGGATGTGGAGCATGAAAATTACAAGGAGAATATAGAGGCGAATGATTATTATTAGTTATGGGAGAATAAAAAGTGGTTTTTGGGAAAAATGAGATTATGAGTGTAATGATTCTGCCCAAACATGGTTTAGACTTAAGAGGATGATTCTCCCCGTAACCACTCTCATCCTCTTTGTCCCAAACATCACCTTAAGTAATTATGTTGGGCTACTAATACTTAGTACAATTGGGGTCTGCCCCAAAAGAAAGAAAATATGTTAATTTTATTTTATATTTCATATTGTGCTTTTATGTAATAAATGAAGTATTTGAGTTTTATGAGAAGTGCATTACACAAATTCTCTTAAAAAATTTGCCTGTTTACCTAGCATTTGTATTCTTATCTTCTATTCTTTCGCGGCTTCGTAAATCTGTGTTTTTTATGTTGCCTTTTCTTATTCTGGATTGTTGTTATCCATTCTTACACAACACTGTGTTTCTTTTTTCACTAGTCGATATTACGCCAAGCTAATTTTAAAGGTGCCAAGTTATTGGGTGCTAGTTTCTTCGATGCTGATTTAACAGGTTTGTTGTTTCTGTGTTTTTAAGTGATGTTATGAATGCAAGGTCTTCTTGAGGATCTTCACTTGTGACTGGAGAACAAAATTCAATAGAAGCTGAATTTGGTTGTTTCTTTCTTTGCCTAATTGTTAGGGGCGGATCTTTCTGATGCTGATCTCCGAGGTGCAGACTTTTCTCTGGCCAATGTTACAAAGGTGATGTATGTTTCTGTTCACAATGTCATGCTAGCTGATTTAATAAAGTTACCATGACAACCAAATGTAGTAGTACGGTTGTCGTGTGAGAATAGTGCGCTTAAGTTAGCTCGAACACTCACGGATATAGCCGATGTTATTTTCATTCTTGATGAATTCAAAGAAATATGATGGGAAACTACTAGGGCAAAAATGATTGATGTGATGCAATAACCTTTAAAGTGTATATGTAGTTCGAGATGCAGAAATACCTGCTGTTTCTATCTGAGAATTTCCATTCTGAGTTTTGGTTCCTATTTTGCTTCCAATGAAATTATAATCTTTATCTTTAACGGGGTTTTTTTCCTGCTTTCGGCAGGCAAATTTAAGCAATGCCAACTTAGAAGGTGCGCTTGCCACAGGAAATACTTCTTTCCGTGGATCAGCAATAAATGGAGCTGGTATGTAAAGCCAACATTTATGCAGCTTTTGGTATTTCATTAGTTATTTGGCATGTTTCACTGTCTGTCACTCTGCACTGATACTCATTTTCGTTAGAGATGTACTTAGAGTCAGAAGAGTTGATGCAGGAAATTGAATTGAAGTTACAATGGATATGATTTCCTCATGATAATTTGTAACACGATGAAATACTCATGTCTAATTTACCTCATAATTTCAGACTTCACAGACGTGCCTTTGAGAGAGGATCAACGGGAGTACCTTTGCAAAGTTGCAGACGGGTAATAAAAAATTTCTTCTCTCTTTTTTTTTTTTTGTTAACTGAGAATGATTTATCATAAATGAGGTTAAAAAAAAACTTTTAGTCCCCAAACTTCGATGAAAGTAACAAGTTGATCTATTAGCTTGTGTGATTTTGTCTTTATACTTTTTAATTTGTAACAAGTTGTGAGGTACTAATAGGTAACTAGTTAAGGGAGTCTTGATTAAGTGGAGGAAGTTAGAAATCTTAAAAAGGAGGAGTGATTTTAAGGGGGTGTTTGAGGGAAAGAGATTAAAATGGGGAGAATGGAAAGGAGGCTGATTATATGTGTTTGGAATATCAACAATCATTCTCCCCATAATTTCATTTCGCCGTAACAACTCTTACTCCCTATAACTACTTTTCACTCACATCATGCCCAATATTTTATTTTTTCAATAATTATTATTTTCACTTCAAACACAAGTAATGATGCTCCCCATAATCATTTTTTTCATTTCAAACACAGATAACCATTCTCTCGAATTATATTCTTCTTCATATTCTCTCCTTAATTCTCATCCTCCTCATAATCATTTTTATTCTCTTTGTTCCAAATACTCCGTGTGAGACCTTACAGAAAGACAAACCTTCGCGAATGGTATTTTTTTTCTTGCATTTGTTTATGGGGGAATCCTTTCCAACACAATCTAGTACCTTAGCATGAATATATAACAATTTTAGCCCTATTGTAACAATTTAAATGTCAACTTCGATTAAAAATGAGTTAATCTTTGTAGTTTATATATGCATTTGGTCCTTAATAAATTTATGGATCACAAATATCATAAAATTCATTAAATCTTAATAATATCTTTTTATGTAGAGACTATATATTGTTAAGTACAAAGATCAAATTGTTACATATTGAAGTTGAGCACGAAGGACAACATTGTTGCTTCAGCACCAAAGTATTTTATGACCCCATATAAACTAATAAACGTGGTTCTTTCTGTTGACAGGGTGAACCCAACAACTGGAAATGCAACCCGAGAGACCTTGCTCTGTAATTGAGACTCAAATTATATGTCGAGTTACCAAGGTACATGAGTCGTACAGATCAACTTTAAAATGTAAAGAATTTAATAACTATATCAGTATCCAATCCAATGAGTTCAATTTTGCCATTCATCTGTCAATGTCTCCAACCATGTTTTCTTTCCTGTGGCTCGTCGATAGATATCATAAGGCTTATCAAATGTGACAGATTCAAAGAATTAAAACGCATTGGATTTCCTTGCTATTGAATTCAACATCCAGTTGCTTTAGAATCAGGGTGCTAAGAAAGTGAAATTGACTTTCCAAGGCATAGGACATATACATGCACCATTTACAGAAACCACTATTAAATCTCATAGGTCATACAGGAACCATATACTGACCAGTGGGTTCCTCGGTCCCAATTTATAGACCATGTTTCGCCTACTGATTCAGTTGACCAAAATCAAAGCCATTGTTTTGCATAACCTATGCTCTCATTTGAGATTAATTTTTTCCTCTTCCTTGTTATAATACATCACCCTAAACATCATATATCATAACCTTTATTATAATATTTTGCACTACAAACTCGATTTACAATAATCATTGTTTGTAATAACTCAACAGGTGTCATAGCCGTT

mRNA sequence

AATAAGGAAAGCAAATCCAGAGCAAAAAATAGAAGCTTTTGGAAATGGGTCTGTTGAGCGCTTCATCATCATGTTGTTGCAGTTCCACAATTCCTCCAAAACCAAAACCTGGCCTTCATCTTCCTCCCACCGTTCCCGCCCTTCCAAACCCTCAGGTTCCAAAGCACAAAGTGGAAGCCGCTCGAAATTTGGTTCTTTCCATTGGAGAATCCGCCTCGAAAGCCAGCTTCCTCGCTTTGATTTCCGCCTCCTTGTTCCTCGCCGATCCTGCGCTTGCCTTTAAGGGTGGAGGTCCTTATGGTGCCGGAGTCACTCGAGGCCAGGATCTTACCGGGAAGGATTTCAGTGGGAAGACGTTGATCAAGCAAGATTTCAAAACGTCGATATTACGCCAAGCTAATTTTAAAGGTGCCAAGTTATTGGGTGCTAGTTTCTTCGATGCTGATTTAACAGGGGCGGATCTTTCTGATGCTGATCTCCGAGGTGCAGACTTTTCTCTGGCCAATGTTACAAAGGCAAATTTAAGCAATGCCAACTTAGAAGGTGCGCTTGCCACAGGAAATACTTCTTTCCGTGGATCAGCAATAAATGGAGCTGACTTCACAGACGTGCCTTTGAGAGAGGATCAACGGGAGTACCTTTGCAAAGTTGCAGACGGGGTGAACCCAACAACTGGAAATGCAACCCGAGAGACCTTGCTCTGTAATTGAGACTCAAATTATATGTCGAGTTACCAAGGTACATGAGTCGTACAGATCAACTTTAAAATGTAAAGAATTTAATAACTATATCAGTATCCAATCCAATGAGTTCAATTTTGCCATTCATCTGTCAATGTCTCCAACCATGTTTTCTTTCCTGTGGCTCGTCGATAGATATCATAAGGCTTATCAAATGTGACAGATTCAAAGAATTAAAACGCATTGGATTTCCTTGCTATTGAATTCAACATCCAGTTGCTTTAGAATCAGGGTGCTAAGAAAGTGAAATTGACTTTCCAAGGCATAGGACATATACATGCACCATTTACAGAAACCACTATTAAATCTCATAGGTCATACAGGAACCATATACTGACCAGTGGGTTCCTCGGTCCCAATTTATAGACCATGTTTCGCCTACTGATTCAGTTGACCAAAATCAAAGCCATTGTTTTGCATAACCTATGCTCTCATTTGAGATTAATTTTTTCCTCTTCCTTGTTATAATACATCACCCTAAACATCATATATCATAACCTTTATTATAATATTTTGCACTACAAACTCGATTTACAATAATCATTGTTTGTAATAACTCAACAGGTGTCATAGCCGTT

Coding sequence (CDS)

ATGGGTCTGTTGAGCGCTTCATCATCATGTTGTTGCAGTTCCACAATTCCTCCAAAACCAAAACCTGGCCTTCATCTTCCTCCCACCGTTCCCGCCCTTCCAAACCCTCAGGTTCCAAAGCACAAAGTGGAAGCCGCTCGAAATTTGGTTCTTTCCATTGGAGAATCCGCCTCGAAAGCCAGCTTCCTCGCTTTGATTTCCGCCTCCTTGTTCCTCGCCGATCCTGCGCTTGCCTTTAAGGGTGGAGGTCCTTATGGTGCCGGAGTCACTCGAGGCCAGGATCTTACCGGGAAGGATTTCAGTGGGAAGACGTTGATCAAGCAAGATTTCAAAACGTCGATATTACGCCAAGCTAATTTTAAAGGTGCCAAGTTATTGGGTGCTAGTTTCTTCGATGCTGATTTAACAGGGGCGGATCTTTCTGATGCTGATCTCCGAGGTGCAGACTTTTCTCTGGCCAATGTTACAAAGGCAAATTTAAGCAATGCCAACTTAGAAGGTGCGCTTGCCACAGGAAATACTTCTTTCCGTGGATCAGCAATAAATGGAGCTGACTTCACAGACGTGCCTTTGAGAGAGGATCAACGGGAGTACCTTTGCAAAGTTGCAGACGGGGTGAACCCAACAACTGGAAATGCAACCCGAGAGACCTTGCTCTGTAATTGA

Protein sequence

MGLLSASSSCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEAARNLVLSIGESASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSAINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN

Homology

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BLAST of Sed0013536 vs. NCBI nr
Match: XP_023552471.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.1 bits (941), Expect = 1.1e-97
Identity = 197/221 (89.14%), Postives = 203/221 (91.86%), Query Frame = 0


Query: 1   MGLLSASSSCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEAARNLVLSIGESASKA 60
           M LL+AS    CSST     +P L LPP++ AL NPQV KH+VEA RN VLS+GESASKA
Sbjct: 1   MALLNAS---LCSSTCRIPSRPHLPLPPSISALSNPQVMKHQVEATRNFVLSVGESASKA 60

Query: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120
           SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF
Sbjct: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120

Query: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSA 180
           KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS 
Sbjct: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSI 180

Query: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 222
           INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Sed0013536 vs. NCBI nr
Match: XP_022955559.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 365.9 bits (938), Expect = 2.4e-97
Identity = 197/221 (89.14%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MGLLSASSSCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEAARNLVLSIGESASKA 60
           M LL+AS    CSST     +P L LPP+V A  NPQV KH+VEA RN VLS+GESASKA
Sbjct: 1   MALLNAS---LCSSTCRIPSRPHLPLPPSVSAFSNPQVMKHQVEATRNFVLSVGESASKA 60

Query: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120
           SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF
Sbjct: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120

Query: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSA 180
           KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS 
Sbjct: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSI 180

Query: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 222
           INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

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BLAST of Sed0013536 vs. NCBI nr
Match: KAG6602651.1 (Thylakoid lumenal 15 kDa protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 364.8 bits (935), Expect = 5.4e-97
Identity = 195/221 (88.24%), Postives = 201/221 (90.95%), Query Frame = 0


Query: 1   MGLLSASSSCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEAARNLVLSIGESASKA 60
           M LL+AS    CSST     +P L LPP++PA  NPQ  KH+VEA RN VLS+GESASKA
Sbjct: 1   MALLNAS---LCSSTCRIPSRPHLPLPPSIPAFSNPQAMKHQVEATRNFVLSVGESASKA 60

Query: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120
           SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF
Sbjct: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120

Query: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSA 180
           KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS 
Sbjct: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSI 180

Query: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 222
           INGADFTDVPLREDQREYLCKVADGVNP TGNATRETLLCN
Sbjct: 181 INGADFTDVPLREDQREYLCKVADGVNPMTGNATRETLLCN 218

[Close]

BLAST of Sed0013536 vs. NCBI nr
Match: XP_022955551.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 364.4 bits (934), Expect = 7.0e-97
Identity = 196/221 (88.69%), Postives = 201/221 (90.95%), Query Frame = 0


Query: 1   MGLLSASSSCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEAARNLVLSIGESASKA 60
           M LL+AS    CSST     +P L LPP+V A  NPQ  KH+VEA RN VLS+GESASKA
Sbjct: 1   MALLNAS---LCSSTCRIPSRPHLPLPPSVSAFSNPQTMKHQVEATRNFVLSVGESASKA 60

Query: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120
           SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF
Sbjct: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120

Query: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSA 180
           KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS 
Sbjct: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSI 180

Query: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 222
           INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Sed0013536 vs. NCBI nr
Match: XP_022991097.1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 364.0 bits (933), Expect = 9.1e-97
Identity = 195/221 (88.24%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MGLLSASSSCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEAARNLVLSIGESASKA 60
           M LL+AS    CSST     +  L LPP++PA  NP+V KH+VEA RN VLS+GESASKA
Sbjct: 1   MALLNAS---LCSSTCRIPSRSHLPLPPSIPAFSNPRVMKHQVEATRNFVLSVGESASKA 60

Query: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120
           SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF
Sbjct: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120

Query: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSA 180
           KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS 
Sbjct: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSI 180

Query: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 222
           INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Sed0013536 vs. ExPASy Swiss-Prot
Match: O22160 (Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g44920 PE=1 SV=2)

HSP 1 Score: 284.6 bits (727), Expect = 9.2e-76
Identity = 156/214 (72.90%), Postives = 169/214 (78.97%), Query Frame = 0


Query: 9   SCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEA-ARNLVLSIGESASKASFLALIS 68
           SCC  S  P    P              Q  K  V +  R++V S+GE  SK S  AL+S
Sbjct: 11  SCCNISQKPSLFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEVSKRSLFALVS 70

Query: 69  ASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLG 128
           ASLF  DPALAFKGGGPYG GVTRGQDL+GKDFSG+TLI+QDFKTSILRQANFKGAKLLG
Sbjct: 71  ASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLG 130

Query: 129 ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSAINGADFT 188
           ASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+GS I GADFT
Sbjct: 131 ASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFKGSNITGADFT 190

Query: 189 DVPLREDQREYLCKVADGVNPTTGNATRETLLCN 222
           DVPLR+DQR YLCKVADGVN TTGNATR+TLLCN
Sbjct: 191 DVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

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BLAST of Sed0013536 vs. ExPASy Swiss-Prot
Match: B1WVN5 (Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rfr32 PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.6e-14
Identity = 55/126 (43.65%), Postives = 70/126 (55.56%), Query Frame = 0


Query: 95  LTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADFSLAN 154
           L G+DFSGK+L    F  + L  +NF  A L GA F  + L GADL  ADL      L +
Sbjct: 54  LIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTS 113

Query: 155 VTKANLSNANLEGALATGNTSFRGSAINGADFTDVPLREDQREYLCKVADGVNPTTGNAT 214
              A+L+NA L  A+    T F  + I GADF+   L   + + LC  ADGVNP TG +T
Sbjct: 114 FKGADLTNAVLTEAIMM-RTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVST 173

Query: 215 RETLLC 221
           RE+L C
Sbjct: 174 RESLGC 178

[Close]

BLAST of Sed0013536 vs. ExPASy Swiss-Prot
Match: Q8H1Q1 (Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TL20.3 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-08
Identity = 52/164 (31.71%), Postives = 80/164 (48.78%), Query Frame = 0


Query: 57  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 116
           AS +   A+   + F AD    F  G     G     DL+    S +   + +F ++ +R
Sbjct: 81  ASSSGVPAMAELNRFEADTRGEFGIGSAAQYG---SADLSKTVHSNENFRRANFTSADMR 140

Query: 117 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 176
           +++F G+   GA    A    A+ S ADL         + +ANL+NA L  ++ T  +  
Sbjct: 141 ESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDL 200

Query: 177 RGSAINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC 221
            G+ I GADF+D  +   Q++ LCK A G NP TG  TR++L C
Sbjct: 201 GGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240

[Close]

BLAST of Sed0013536 vs. ExPASy Swiss-Prot
Match: Q9SE95 (FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.3e-07
Identity = 42/111 (37.84%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 91  RGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADF 150
           R  D  G  F    L + +F ++ LR A   G  L  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 151 SLANVTKANLSNANLEGALATG----NTSFRGSAINGADFTDVPLREDQRE 198
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

[Close]

BLAST of Sed0013536 vs. ExPASy Swiss-Prot
Match: P73709 (Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1819 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.0e-06
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 0


Query: 92  GQDLTGKDFSGKTL---------IKQDFK-------TSILRQANFKGAKLLGASFFDADL 151
           G DL G D SG TL         ++Q+ K        +IL +A+ +GA + G     ADL
Sbjct: 114 GADLRGADLSGATLTGACLRGANMRQEKKGYYTNLQAAILGRADLQGANMKGVDLSRADL 173

Query: 152 TGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSAINGADFTDVPL 192
           + A+L +A+LR  D     + KA+LS ANL+GAL T + +  G+ +NGAD  +  L
Sbjct: 174 SYANLKEANLRDVD-----LRKADLSYANLKGALLT-DANLSGAKLNGADLQNANL 223

[Close]

BLAST of Sed0013536 vs. ExPASy TrEMBL
Match: A0A6J1GWM1 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457530 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.2e-97
Identity = 197/221 (89.14%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MGLLSASSSCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEAARNLVLSIGESASKA 60
           M LL+AS    CSST     +P L LPP+V A  NPQV KH+VEA RN VLS+GESASKA
Sbjct: 1   MALLNAS---LCSSTCRIPSRPHLPLPPSVSAFSNPQVMKHQVEATRNFVLSVGESASKA 60

Query: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120
           SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF
Sbjct: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120

Query: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSA 180
           KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS 
Sbjct: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSI 180

Query: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 222
           INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Sed0013536 vs. ExPASy TrEMBL
Match: A0A6J1GU31 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457530 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.4e-97
Identity = 196/221 (88.69%), Postives = 201/221 (90.95%), Query Frame = 0


Query: 1   MGLLSASSSCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEAARNLVLSIGESASKA 60
           M LL+AS    CSST     +P L LPP+V A  NPQ  KH+VEA RN VLS+GESASKA
Sbjct: 1   MALLNAS---LCSSTCRIPSRPHLPLPPSVSAFSNPQTMKHQVEATRNFVLSVGESASKA 60

Query: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120
           SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF
Sbjct: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120

Query: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSA 180
           KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS 
Sbjct: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSI 180

Query: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 222
           INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Sed0013536 vs. ExPASy TrEMBL
Match: A0A6J1JKT4 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487791 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.4e-97
Identity = 195/221 (88.24%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MGLLSASSSCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEAARNLVLSIGESASKA 60
           M LL+AS    CSST     +  L LPP++PA  NP+V KH+VEA RN VLS+GESASKA
Sbjct: 1   MALLNAS---LCSSTCRIPSRSHLPLPPSIPAFSNPRVMKHQVEATRNFVLSVGESASKA 60

Query: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120
           SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF
Sbjct: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120

Query: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSA 180
           KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS 
Sbjct: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSI 180

Query: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 222
           INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Sed0013536 vs. ExPASy TrEMBL
Match: A0A6J1JPS6 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487791 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.3e-96
Identity = 194/221 (87.78%), Postives = 201/221 (90.95%), Query Frame = 0


Query: 1   MGLLSASSSCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEAARNLVLSIGESASKA 60
           M LL+AS    CSST     +  L LPP++PA  NP+  KH+VEA RN VLS+GESASKA
Sbjct: 1   MALLNAS---LCSSTCRIPSRSHLPLPPSIPAFSNPRAMKHQVEATRNFVLSVGESASKA 60

Query: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120
           SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF
Sbjct: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120

Query: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSA 180
           KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS 
Sbjct: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSI 180

Query: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 222
           INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN
Sbjct: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 218

[Close]

BLAST of Sed0013536 vs. ExPASy TrEMBL
Match: A0A6J1BVJ8 (thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006104 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.9e-96
Identity = 191/221 (86.43%), Postives = 204/221 (92.31%), Query Frame = 0


Query: 1   MGLLSASSSCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEAARNLVLSIGESASKA 60
           M LL+A S CC +S IPP P   LHLPP++ A P P V K ++EA+RNL+LS+GESASKA
Sbjct: 1   MALLNA-SLCCSTSRIPPAPH--LHLPPSISAHPTPPVLKQQLEASRNLILSVGESASKA 60

Query: 61  SFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANF 120
           +FLAL+SASLFLADPALAFKGGGPYGAGVTRGQDL+GKDFSGKTLIKQDFKTSILRQANF
Sbjct: 61  TFLALLSASLFLADPALAFKGGGPYGAGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANF 120

Query: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSA 180
           KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGS 
Sbjct: 121 KGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGST 180

Query: 181 INGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLCN 222
           I GADFTDVPLREDQREYLCKVADGVNPTTGNATR+TLLCN
Sbjct: 181 IEGADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLLCN 218

[Close]

BLAST of Sed0013536 vs. TAIR 10
Match: AT2G44920.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 284.6 bits (727), Expect = 6.6e-77
Identity = 156/214 (72.90%), Postives = 169/214 (78.97%), Query Frame = 0


Query: 9   SCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEA-ARNLVLSIGESASKASFLALIS 68
           SCC  S  P    P              Q  K  V +  R++V S+GE  SK S  AL+S
Sbjct: 11  SCCNISQKPSLFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEVSKRSLFALVS 70

Query: 69  ASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLG 128
           ASLF  DPALAFKGGGPYG GVTRGQDL+GKDFSG+TLI+QDFKTSILRQANFKGAKLLG
Sbjct: 71  ASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLG 130

Query: 129 ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSAINGADFT 188
           ASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+GS I GADFT
Sbjct: 131 ASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFKGSNITGADFT 190

Query: 189 DVPLREDQREYLCKVADGVNPTTGNATRETLLCN 222
           DVPLR+DQR YLCKVADGVN TTGNATR+TLLCN
Sbjct: 191 DVPLRDDQRVYLCKVADGVNATTGNATRDTLLCN 224

[Close]

BLAST of Sed0013536 vs. TAIR 10
Match: AT2G44920.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 214.5 bits (545), Expect = 8.3e-56
Identity = 123/177 (69.49%), Postives = 134/177 (75.71%), Query Frame = 0


Query: 9   SCCCSSTIPPKPKPGLHLPPTVPALPNPQVPKHKVEA-ARNLVLSIGESASKASFLALIS 68
           SCC  S  P    P              Q  K  V +  R++V S+GE  SK S  AL+S
Sbjct: 11  SCCNISQKPSLFSPSSRSSHCPIRCSQSQEGKEVVTSPLRSVVWSLGEEVSKRSLFALVS 70

Query: 69  ASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLG 128
           ASLF  DPALAFKGGGPYG GVTRGQDL+GKDFSG+TLI+QDFKTSILRQANFKGAKLLG
Sbjct: 71  ASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLG 130

Query: 129 ASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSFRGSAINGA 185
           ASFFDADLTGADLS+ADLRGADFSLANVTK NL+NANLEGA  TGNTSF+GS I GA
Sbjct: 131 ASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFKGSNITGA 187

[Close]

BLAST of Sed0013536 vs. TAIR 10
Match: AT1G12250.1 (Pentapeptide repeat-containing protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-09
Identity = 52/164 (31.71%), Postives = 80/164 (48.78%), Query Frame = 0


Query: 57  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 116
           AS +   A+   + F AD    F  G     G     DL+    S +   + +F ++ +R
Sbjct: 81  ASSSGVPAMAELNRFEADTRGEFGIGSAAQYG---SADLSKTVHSNENFRRANFTSADMR 140

Query: 117 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 176
           +++F G+   GA    A    A+ S ADL         + +ANL+NA L  ++ T  +  
Sbjct: 141 ESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDL 200

Query: 177 RGSAINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC 221
            G+ I GADF+D  +   Q++ LCK A G NP TG  TR++L C
Sbjct: 201 GGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 240

[Close]

BLAST of Sed0013536 vs. TAIR 10
Match: AT1G12250.2 (Pentapeptide repeat-containing protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-09
Identity = 52/164 (31.71%), Postives = 80/164 (48.78%), Query Frame = 0


Query: 57  ASKASFLALISASLFLADPALAFKGGGPYGAGVTRGQDLTGKDFSGKTLIKQDFKTSILR 116
           AS +   A+   + F AD    F  G     G     DL+    S +   + +F ++ +R
Sbjct: 7   ASSSGVPAMAELNRFEADTRGEFGIGSAAQYG---SADLSKTVHSNENFRRANFTSADMR 66

Query: 117 QANFKGAKLLGASFFDADLTGADLSDADLRGADFSLANVTKANLSNANLEGALATGNTSF 176
           +++F G+   GA    A    A+ S ADL         + +ANL+NA L  ++ T  +  
Sbjct: 67  ESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMVLNEANLTNAVLVRSVLT-RSDL 126

Query: 177 RGSAINGADFTDVPLREDQREYLCKVADGVNPTTGNATRETLLC 221
            G+ I GADF+D  +   Q++ LCK A G NP TG  TR++L C
Sbjct: 127 GGAKIEGADFSDAVIDLLQKQALCKYATGTNPLTGVDTRKSLGC 166

[Close]

BLAST of Sed0013536 vs. TAIR 10
Match: AT5G55000.2 (potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-08
Identity = 42/111 (37.84%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 91  RGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDADLRGADF 150
           R  D  G  F    L + +F ++ LR A   G  L  A+  DA L G     ADLR A  
Sbjct: 174 RNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHL 233

Query: 151 SLANVTKANLSNANLEGALATG----NTSFRGSAINGADFTDVPLREDQRE 198
             A++T ANL  ANLEGA   G    N +F+G+ +  A    V LRE   E
Sbjct: 234 QNADLTNANLEGANLEGANLKGAKLSNANFKGANLQRAYLRHVNLREAHME 284

The following BLAST results are available for this feature:

BLAST of Sed0013536 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552471.1	1.1e-97	89.14	thylakoid lumenal 15 kDa protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022955559.1	2.4e-97	89.14	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita moschata...	[more]
KAG6602651.1	5.4e-97	88.24	Thylakoid lumenal 15 kDa protein 1, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_022955551.1	7.0e-97	88.69	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 [Cucurbita moschata...	[more]
XP_022991097.1	9.1e-97	88.24	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 [Cucurbita maxima]	[more]

BLAST of Sed0013536 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22160	9.2e-76	72.90	Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]
B1WVN5	2.6e-14	43.65	Pentapeptide repeat protein Rfr32 OS=Crocosphaera subtropica (strain ATCC 51142 ...	[more]
Q8H1Q1	1.7e-08	31.71	Thylakoid lumenal protein TL20.3, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SE95	5.3e-07	37.84	FH protein interacting protein FIP2 OS=Arabidopsis thaliana OX=3702 GN=FIP2 PE=1...	[more]
P73709	2.0e-06	37.07	Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ...	[more]

BLAST of Sed0013536 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWM1	1.2e-97	89.14	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita moscha...	[more]
A0A6J1GU31	3.4e-97	88.69	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita moscha...	[more]
A0A6J1JKT4	4.4e-97	88.24	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X2 OS=Cucurbita maxima...	[more]
A0A6J1JPS6	1.3e-96	87.78	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Cucurbita maxima...	[more]
A0A6J1BVJ8	2.9e-96	86.43	thylakoid lumenal 15 kDa protein 1, chloroplastic isoform X1 OS=Momordica charan...	[more]

BLAST of Sed0013536 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44920.2	6.6e-77	72.90	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G44920.1	8.3e-56	69.49	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G12250.1	1.2e-09	31.71	Pentapeptide repeat-containing protein	[more]
AT1G12250.2	1.2e-09	31.71	Pentapeptide repeat-containing protein	[more]
AT5G55000.2	3.8e-08	37.84	potassium channel tetramerisation domain-containing protein / pentapeptide repea...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001646	Pentapeptide repeat	PFAM	PF00805	Pentapeptide	coord: 85..123 e-value: 9.1E-13 score: 47.6
None	No IPR available	GENE3D	2.160.20.80		coord: 50..193 e-value: 2.5E-46 score: 158.4
None	No IPR available	SUPERFAMILY	141571	Pentapeptide repeat-like	coord: 62..164
IPR044213	Thylakoid lumenal 15kDa protein 1-like	PANTHER	PTHR47200	THYLAKOID LUMENAL 15 KDA PROTEIN 1, CHLOROPLASTIC	coord: 11..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013536.1	Sed0013536.1	mRNA
Sed0013536.2	Sed0013536.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009534	chloroplast thylakoid