Sed0013490 (gene) Chayote v1

Overview


Name	Sed0013490
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Histone H2B
Location	LG05: 40281834 .. 40282635 (+)
RNA-Seq Expression	Sed0013490
Synteny	Sed0013490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACAATCTCATTTCCCATCTTCAAATCTTCAATTCGATTTCTTACTCTCTAACCTGCAAATCAATCTCCGATGGCACCAAAAGCCGACAAGAAGCCCGCCGAGAAGAAACCGGCGGAGGAGAAGAAGACGGTAGCGGAGAAATCTCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGTTGCCGAAAGAAGGCGGCGCCGTGGCCGGGGACAAGAAGAAGAAGAGGACGAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGACATCGGGATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACGACATCTTCGAGAAACTCGCGCAAGAGTCTTCCAAGTTGGCTCGCTACAACAAGAAGCCCACCATTACGTCCAGGGAGATCCAGACGGCTGTGAGGCTTGTTCTTCCCGGTGAATTGGCCAAACACGCCGTATCGGAAGGTACCAAGGCCGTGACGAAATTTACCAGTTCTTAATTCATCTGTTAGGTTATGTTAGGGTTTTTAGATTTTGCGAGACTGGAATCGAAATTGTCCGTTTGGGATTATCATTGAAATTGACGTTTAATTTTTGTATGATTTGTATATGCTGTTTCTCCTTTCAGTAATCCTTTTGAATTCTGATCTATGTCATGAATGTATCTGTTTGCGTGTGAAATTAGTGATGGGGTTTTGAGAACTGATCATTTATGAATCTCTCTTGGAGTTTTATCTGAATTTAATTGAAGATCTAATGTCATCAAGTTCGCATTTTGAGGTTGCT

mRNA sequence

ATTACAATCTCATTTCCCATCTTCAAATCTTCAATTCGATTTCTTACTCTCTAACCTGCAAATCAATCTCCGATGGCACCAAAAGCCGACAAGAAGCCCGCCGAGAAGAAACCGGCGGAGGAGAAGAAGACGGTAGCGGAGAAATCTCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGTTGCCGAAAGAAGGCGGCGCCGTGGCCGGGGACAAGAAGAAGAAGAGGACGAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGACATCGGGATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACGACATCTTCGAGAAACTCGCGCAAGAGTCTTCCAAGTTGGCTCGCTACAACAAGAAGCCCACCATTACGTCCAGGGAGATCCAGACGGCTGTGAGGCTTGTTCTTCCCGGTGAATTGGCCAAACACGCCGTATCGGAAGGTACCAAGGCCGTGACGAAATTTACCAGTTCTTAATTCATCTGTTAGGTTATGTTAGGGTTTTTAGATTTTGCGAGACTGGAATCGAAATTGTCCGTTTGGGATTATCATTGAAATTGACGTTTAATTTTTGTATGATTTGTATATGCTGTTTCTCCTTTCAGTAATCCTTTTGAATTCTGATCTATGTCATGAATGTATCTGTTTGCGTGTGAAATTAGTGATGGGGTTTTGAGAACTGATCATTTATGAATCTCTCTTGGAGTTTTATCTGAATTTAATTGAAGATCTAATGTCATCAAGTTCGCATTTTGAGGTTGCT

Coding sequence (CDS)

ATGGCACCAAAAGCCGACAAGAAGCCCGCCGAGAAGAAACCGGCGGAGGAGAAGAAGACGGTAGCGGAGAAATCTCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGTTGCCGAAAGAAGGCGGCGCCGTGGCCGGGGACAAGAAGAAGAAGAGGACGAAGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCCAGACATCGGGATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACGACATCTTCGAGAAACTCGCGCAAGAGTCTTCCAAGTTGGCTCGCTACAACAAGAAGCCCACCATTACGTCCAGGGAGATCCAGACGGCTGTGAGGCTTGTTCTTCCCGGTGAATTGGCCAAACACGCCGTATCGGAAGGTACCAAGGCCGTGACGAAATTTACCAGTTCTTAA

Protein sequence

MAPKADKKPAEKKPAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of Sed0013490 vs. NCBI nr
Match: MBA0574626.1 (hypothetical protein [Gossypium lobatum] >MBA0700220.1 hypothetical protein [Gossypium aridum] >MBA0728808.1 hypothetical protein [Gossypium laxum] >MBA0817249.1 hypothetical protein [Gossypium harknessii] >MBA0873276.1 hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 141/147 (95.92%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVETY 60
           MAPKA+KKPAEKKPAEEKKTVAEK+PAEKKPKAGKKLPKEGGA AGDKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0013490 vs. NCBI nr
Match: XP_021663199.1 (histone H2B-like [Hevea brasiliensis])

HSP 1 Score: 258.8 bits (660), Expect = 2.8e-65
Identity = 141/147 (95.92%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVETY 60
           MAPKA+KKPAEKKPAEEKKTVAEK+PAEKKPKAGKKLPKEGGAVA DKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAVAADKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           V+LVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VKLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0013490 vs. NCBI nr
Match: XP_018836010.1 (probable histone H2B.1 [Juglans regia] >XP_040994077.1 probable histone H2B.1 [Juglans microcarpa x Juglans regia] >KAF5470576.1 hypothetical protein F2P56_011080 [Juglans regia])

HSP 1 Score: 258.5 bits (659), Expect = 3.6e-65
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKK-TVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVET 60
           MAPKADKKPAEKKPAEEKK TVAEK+PAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVET
Sbjct: 1   MAPKADKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Sed0013490 vs. NCBI nr
Match: XP_022755738.1 (histone H2B [Durio zibethinus] >KJB83793.1 hypothetical protein B456_013G264900 [Gossypium raimondii] >MBA0633369.1 hypothetical protein [Gossypium davidsonii] >MBA0669169.1 hypothetical protein [Gossypium klotzschianum] >MBA0752777.1 hypothetical protein [Gossypium gossypioides] >MBA0784334.1 hypothetical protein [Gossypium trilobum] >TYG39132.1 hypothetical protein ES288_D13G279900v1 [Gossypium darwinii] >TYH36664.1 hypothetical protein ES332_D13G279500v1 [Gossypium tomentosum])

HSP 1 Score: 258.5 bits (659), Expect = 3.6e-65
Identity = 141/147 (95.92%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVETY 60
           MAPKA+KKPAEKKPAEEKKTVAEK+PAEKKPKAGKKLPKEGGA AGDKKKKRTKKS ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSTETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0013490 vs. NCBI nr
Match: XP_042958866.1 (probable histone H2B.1 [Carya illinoinensis] >KAG2670200.1 hypothetical protein I3760_14G073400 [Carya illinoinensis] >KAG6629243.1 hypothetical protein CIPAW_14G071100 [Carya illinoinensis] >KAG6678300.1 hypothetical protein I3842_14G073400 [Carya illinoinensis] >KAG7947009.1 hypothetical protein I3843_14G071700 [Carya illinoinensis])

HSP 1 Score: 258.1 bits (658), Expect = 4.7e-65
Identity = 144/148 (97.30%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKK-TVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVET 60
           MAPKA+KKPAEKKPAEEKK TVAEK+PAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVET
Sbjct: 1   MAPKAEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Sed0013490 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 256.1 bits (653), Expect = 2.3e-67
Identity = 140/147 (95.24%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVETY 60
           MAPKA+KKPAEKKPAEEKK VAEK+PAEKKPKAGKKLPKEGGA AGDKKKKR KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0013490 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 250.8 bits (639), Expect = 9.8e-66
Identity = 139/148 (93.92%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKK-TVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVET 60
           MAPK +KKPAEKKPAEEKK TVAEK+PAEKKPKAGKKLPKEGG+ AG+KKKKR+KKSVET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           AVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of Sed0013490 vs. ExPASy Swiss-Prot
Match: Q1SWQ1 (Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 246.9 bits (629), Expect = 1.4e-64
Identity = 137/148 (92.57%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKK-TVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVET 60
           MAPK +KKPAEKKPAEEKK TVAEK+PAEKKPKAGKKLPKEGG+ AG+KKKKR+KKSVET
Sbjct: 1   MAPKGEKKPAEKKPAEEKKSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKKSVET 60

Query: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQT 120
           YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKKPTITSREIQT
Sbjct: 61  YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQT 120

Query: 121 AVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           AVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 121 AVRLVLPGELAKHDVSEGTKAVTKFTSS 148

[Close]

BLAST of Sed0013490 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-61
Identity = 136/151 (90.07%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEK----KTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKS 60
           MAPKA+KKPAEKKPA EK    K+ AEK+PAEKKPKAGKKLPKE GA  GDKKKK  KKS
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGA-GGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0013490 vs. ExPASy Swiss-Prot
Match: Q9LZT0 (Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-61
Identity = 135/147 (91.84%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVETY 60
           MAPKA+KKPAEKKP EE K+ AEK+PAEKKPKAGKKLPKE GA  GDKKKK  KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPVEE-KSKAEKAPAEKKPKAGKKLPKEAGA-GGDKKKKMKKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Sed0013490 vs. ExPASy TrEMBL
Match: A0A7J9MRA8 (Histone H2B OS=Gossypium schwendimanii OX=34291 GN=Goshw_000161 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.8e-66
Identity = 141/147 (95.92%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVETY 60
           MAPKA+KKPAEKKPAEEKKTVAEK+PAEKKPKAGKKLPKEGGA AGDKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0013490 vs. ExPASy TrEMBL
Match: A0A7J8YLQ2 (Histone H2B OS=Gossypium aridum OX=34290 GN=Goari_001785 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.8e-66
Identity = 141/147 (95.92%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVETY 60
           MAPKA+KKPAEKKPAEEKKTVAEK+PAEKKPKAGKKLPKEGGA AGDKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0013490 vs. ExPASy TrEMBL
Match: A0A7J8NCK1 (Histone H2B OS=Gossypium lobatum OX=34289 GN=Golob_001814 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.8e-66
Identity = 141/147 (95.92%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVETY 60
           MAPKA+KKPAEKKPAEEKKTVAEK+PAEKKPKAGKKLPKEGGA AGDKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0013490 vs. ExPASy TrEMBL
Match: A0A7J9AXJ4 (Histone H2B OS=Gossypium laxum OX=34288 GN=Golax_001677 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.8e-66
Identity = 141/147 (95.92%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVETY 60
           MAPKA+KKPAEKKPAEEKKTVAEK+PAEKKPKAGKKLPKEGGA AGDKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0013490 vs. ExPASy TrEMBL
Match: A0A7J9I556 (Histone H2B OS=Gossypium harknessii OX=34285 GN=Gohar_001832 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.8e-66
Identity = 141/147 (95.92%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVETY 60
           MAPKA+KKPAEKKPAEEKKTVAEK+PAEKKPKAGKKLPKEGGA AGDKKKKRTKKS+ETY
Sbjct: 1   MAPKAEKKPAEKKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKKSIETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of Sed0013490 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 236.5 bits (602), Expect = 1.4e-62
Identity = 136/151 (90.07%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEK----KTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKS 60
           MAPKA+KKPAEKKPA EK    K+ AEK+PAEKKPKAGKKLPKE GA  GDKKKK  KKS
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGA-GGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0013490 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 236.1 bits (601), Expect = 1.8e-62
Identity = 135/147 (91.84%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKSVETY 60
           MAPKA+KKPAEKKP EE K+ AEK+PAEKKPKAGKKLPKE GA  GDKKKK  KKSVETY
Sbjct: 1   MAPKAEKKPAEKKPVEE-KSKAEKAPAEKKPKAGKKLPKEAGA-GGDKKKKMKKKSVETY 60

Query: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTA 120
           KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSREIQTA
Sbjct: 61  KIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTA 120

Query: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 148
           VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 VRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of Sed0013490 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 234.2 bits (596), Expect = 6.8e-62
Identity = 135/151 (89.40%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAEEK----KTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKS 60
           MAP+A+KKPAEKKPA EK    K+ AEK+PAEKKPKAGKKLPKE GA  GDKKKK  KKS
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEEKSKAEKAPAEKKPKAGKKLPKEAGA-GGDKKKKMKKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
           VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSRE
Sbjct: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of Sed0013490 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 230.3 bits (586), Expect = 9.8e-61
Identity = 132/151 (87.42%), Postives = 137/151 (90.73%), Query Frame = 0


Query: 1   MAPKADKKPAEKKPAE----EKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKKS 60
           MAPKA KKPAEKKPAE    E++ VAEK+PAEKKPKAGKKLPKE      +KKKKR KKS
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEKVAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKKS 60

Query: 61  VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSRE 120
            ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSRE
Sbjct: 61  TETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSRE 120

Query: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 IQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of Sed0013490 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 224.6 bits (571), Expect = 5.4e-59
Identity = 132/152 (86.84%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MAPKADKKPAEKK-----PAEEKKTVAEKSPAEKKPKAGKKLPKEGGAVAGDKKKKRTKK 60
           MAP+A+KKPAEKK     P EE K  AEK+PAEKKPKAGKKLP +    AGDKKKKR+KK
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENK-AAEKAPAEKKPKAGKKLPPK---EAGDKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

The following BLAST results are available for this feature:

BLAST of Sed0013490 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0574626.1	1.6e-65	95.92	hypothetical protein [Gossypium lobatum] >MBA0700220.1 hypothetical protein [Gos...	[more]
XP_021663199.1	2.8e-65	95.92	histone H2B-like [Hevea brasiliensis]	[more]
XP_018836010.1	3.6e-65	97.30	probable histone H2B.1 [Juglans regia] >XP_040994077.1 probable histone H2B.1 [J...	[more]
XP_022755738.1	3.6e-65	95.92	histone H2B [Durio zibethinus] >KJB83793.1 hypothetical protein B456_013G264900 ...	[more]
XP_042958866.1	4.7e-65	97.30	probable histone H2B.1 [Carya illinoinensis] >KAG2670200.1 hypothetical protein ...	[more]

BLAST of Sed0013490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	2.3e-67	95.24	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q1S9I9	9.8e-66	93.92	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q1SWQ1	1.4e-64	92.57	Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
P40283	1.9e-61	90.07	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
Q9LZT0	2.5e-61	91.84	Histone H2B.7 OS=Arabidopsis thaliana OX=3702 GN=At3g46030 PE=1 SV=3	[more]

BLAST of Sed0013490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9MRA8	7.8e-66	95.92	Histone H2B OS=Gossypium schwendimanii OX=34291 GN=Goshw_000161 PE=3 SV=1	[more]
A0A7J8YLQ2	7.8e-66	95.92	Histone H2B OS=Gossypium aridum OX=34290 GN=Goari_001785 PE=3 SV=1	[more]
A0A7J8NCK1	7.8e-66	95.92	Histone H2B OS=Gossypium lobatum OX=34289 GN=Golob_001814 PE=3 SV=1	[more]
A0A7J9AXJ4	7.8e-66	95.92	Histone H2B OS=Gossypium laxum OX=34288 GN=Golax_001677 PE=3 SV=1	[more]
A0A7J9I556	7.8e-66	95.92	Histone H2B OS=Gossypium harknessii OX=34285 GN=Gohar_001832 PE=3 SV=1	[more]

BLAST of Sed0013490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59910.1	1.4e-62	90.07	Histone superfamily protein	[more]
AT3G46030.1	1.8e-62	91.84	Histone superfamily protein	[more]
AT3G45980.1	6.8e-62	89.40	Histone superfamily protein	[more]
AT2G28720.1	9.8e-61	87.42	Histone superfamily protein	[more]
AT1G07790.1	5.4e-59	86.84	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 60..78 score: 80.55 coord: 131..144 score: 92.65 coord: 118..131 score: 92.45 coord: 101..118 score: 76.51 coord: 79..99 score: 75.74
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 50..146 e-value: 4.0E-73 score: 258.9
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 5..147
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 115..137
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..123 e-value: 3.4E-23 score: 82.4
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..147 e-value: 2.1E-57 score: 194.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 31..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR23428:SF282	HISTONE H2B	coord: 5..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013490.1	Sed0013490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity