Sed0013483 (gene) Chayote v1

Overview


Name	Sed0013483
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase domain-containing protein
Location	LG13: 25937473 .. 25938513 (-)
RNA-Seq Expression	Sed0013483
Synteny	Sed0013483

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCAAATGGGGTCTTTAGTGTTAAAAGTGCTTATCACCTTGCTATGAACTTATTAAATTTTGATAAGGCTTCTCCCTCTAACAATTCCATGATGGCCAAGATATGGAATTCCTTTTGGAAGGTTGAGATTGCTCCTATGATAAAAATGGGGGTCTGGAATGTGTTAAAGAATTTTATTCCATCCAAAGCGAACATTCAAGCGAAGGAAGTGGATATCAACAGTAGCTGTATATTGTGTGGGAGGGCAAATGAAGCAAATTTGCACTTGGTCAAAGAGTGCAAGCTCGCAATTCATGCTTGGAAATCTATTTTTCCTTTCTTTACTGATTTTGCTTCTTTTTTCAGGTCAGCTGATTCAGGGGAAAGCTTTTGGCATGGGATCTGTACAAAGATCCCTAGGGATGAATATTTTAAAGCAATTATTATTGTGTGGAATATTTGGAAATGTCGTAATTCGGTGTTGCATAACAAAATCAAGGCTAACAAAGAGACTTTGGAAAATTTAATTTCAAATTCTATAAATTTATGTAGTGTTTCTTCAGTCTCAGGTTCTAGTGTGGATATGCCTACCTCTTTGCCACGCTCGTGTGATAGATGGACGCCGCCGTGGATCGAAACTTGGAAATTGAATGTTGATGGTTCGTGGAAGGAGGACAGTGGTAATGGCGGAGTGGGGTGGTTGGTTCGTGATAGAAGGGGTGTGCCTATGTTAGGGGATGCAAATGGGGGAATTAAGGCGCAAATGCGCAAATGTGATGGAGTGTTTGGTCATTCGAGATGGGCTTAGACACATTCTGGATTGTGGCGTTGATCTTCCCAACGAGATCTTGGTGGAATCAGATTCAAGCGCGATCATTTGTTTATTAAATGGGGTTTCTCAAGATGTTACTGAAATCAGCAATATCGTAGCTGATATTAGGGAGATGATCCCTCGGTTTAGGAGTATATCCTTTTCTTTTTGTCGTAGGGAGTGCAATAGAGCTGCTGATTTGTTAGCAAAGCTCGGTCCTCCTCTGGATTTGTTGTTTTGTTTTTCTTGA

mRNA sequence

GTTCAAATGGGGTCTTTAGTGTTAAAAGTGCTTATCACCTTGCTATGAACTTATTAAATTTTGATAAGGCTTCTCCCTCTAACAATTCCATGATGGCCAAGATATGGAATTCCTTTTGGAAGGTTGAGATTGCTCCTATGATAAAAATGGGGGTCTGGAATGTGTTAAAGAATTTTATTCCATCCAAAGCGAACATTCAAGCGAAGGAAGTGGATATCAACAGTAGCTGTATATTGTGTGGGAGGGCAAATGAAGCAAATTTGCACTTGGTCAAAGAGTGCAAGCTCGCAATTCATGCTTGGAAATCTATTTTTCCTTTCTTTACTGATTTTGCTTCTTTTTTCAGGTCAGCTGATTCAGGGGAAAGCTTTTGGCATGGGATCTGTACAAAGATCCCTAGGGATGAATATTTTAAAGCAATTATTATTGTGTGGAATATTTGGAAATGTCGTAATTCGGTGTTGCATAACAAAATCAAGGCTAACAAAGAGACTTTGGAAAATTTAATTTCAAATTCTATAAATTTATGTAGTGTTTCTTCAGTCTCAGGTTCTAGTGTGGATATGCCTACCTCTTTGCCACGCTCGTGTGATAGATGGACGCCGCCGTGGATCGAAACTTGGAAATTGAATGTTGATGGTTCGTGGAAGGAGGACAGTGGTAATGGCGGAGTGGGGTGGTTGGGGATGCAAATGGGGGAATTAAGGCGCAAATGCGCAAATGTGATGGAGTGTTTGGTCATTCGAGATGGGCTTAGACACATTCTGGATTGTGGCGTTGATCTTCCCAACGAGATCTTGGTGGAATCAGATTCAAGCGCGATCATTTGTTTATTAAATGGGGTTTCTCAAGATGTTACTGAAATCAGCAATATCGTAGCTGATATTAGGGAGATGATCCCTCGGTTTAGGAGTATATCCTTTTCTTTTTGTCGTAGGGAGTGCAATAGAGCTGCTGATTTGTTAGCAAAGCTCGGTCCTCCTCTGGATTTGTTGTTTTGTTTTTCTTGA

Coding sequence (CDS)

ATGAACTTATTAAATTTTGATAAGGCTTCTCCCTCTAACAATTCCATGATGGCCAAGATATGGAATTCCTTTTGGAAGGTTGAGATTGCTCCTATGATAAAAATGGGGGTCTGGAATGTGTTAAAGAATTTTATTCCATCCAAAGCGAACATTCAAGCGAAGGAAGTGGATATCAACAGTAGCTGTATATTGTGTGGGAGGGCAAATGAAGCAAATTTGCACTTGGTCAAAGAGTGCAAGCTCGCAATTCATGCTTGGAAATCTATTTTTCCTTTCTTTACTGATTTTGCTTCTTTTTTCAGGTCAGCTGATTCAGGGGAAAGCTTTTGGCATGGGATCTGTACAAAGATCCCTAGGGATGAATATTTTAAAGCAATTATTATTGTGTGGAATATTTGGAAATGTCGTAATTCGGTGTTGCATAACAAAATCAAGGCTAACAAAGAGACTTTGGAAAATTTAATTTCAAATTCTATAAATTTATGTAGTGTTTCTTCAGTCTCAGGTTCTAGTGTGGATATGCCTACCTCTTTGCCACGCTCGTGTGATAGATGGACGCCGCCGTGGATCGAAACTTGGAAATTGAATGTTGATGGTTCGTGGAAGGAGGACAGTGGTAATGGCGGAGTGGGGTGGTTGGGGATGCAAATGGGGGAATTAAGGCGCAAATGCGCAAATGTGATGGAGTGTTTGGTCATTCGAGATGGGCTTAGACACATTCTGGATTGTGGCGTTGATCTTCCCAACGAGATCTTGGTGGAATCAGATTCAAGCGCGATCATTTGTTTATTAAATGGGGTTTCTCAAGATGTTACTGAAATCAGCAATATCGTAGCTGATATTAGGGAGATGATCCCTCGGTTTAGGAGTATATCCTTTTCTTTTTGTCGTAGGGAGTGCAATAGAGCTGCTGATTTGTTAGCAAAGCTCGGTCCTCCTCTGGATTTGTTGTTTTGTTTTTCTTGA

Protein sequence

MNLLNFDKASPSNNSMMAKIWNSFWKVEIAPMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEANLHLVKECKLAIHAWKSIFPFFTDFASFFRSADSGESFWHGICTKIPRDEYFKAIIIVWNIWKCRNSVLHNKIKANKETLENLISNSINLCSVSSVSGSSVDMPTSLPRSCDRWTPPWIETWKLNVDGSWKEDSGNGGVGWLGMQMGELRRKCANVMECLVIRDGLRHILDCGVDLPNEILVESDSSAIICLLNGVSQDVTEISNIVADIREMIPRFRSISFSFCRRECNRAADLLAKLGPPLDLLFCFS

Homology

[Close]

BLAST of Sed0013483 vs. NCBI nr
Match: CAB4303756.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 119.4 bits (298), Expect = 5.7e-23
Identity = 91/321 (28.35%), Postives = 139/321 (43.30%), Query Frame = 0


Query: 12  SNNSMMAKIWNSFWKVEIAPMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEA 71
           S++S  + +W S W V+  P +K  +W    N +  + N++ + V     C  CG  +E 
Sbjct: 621 SSSSSQSSVWKSVWHVDAPPKLKAFIWRGCSNILAVRHNLRRRRVPYTGECGFCGFQDET 680

Query: 72  NLHLVKECKLAIHAWKSIFPFFTDFASFFRSADSGESF---WHGICTKIPRDEYFKAIII 131
             H+  EC  A   W      F        S  +GE F   W  + T +   E+    I 
Sbjct: 681 QAHIFFECDFARAFW------FASPLQLDVSKLAGEDFISTWQHMMTTLNSSEHAAEAIQ 740

Query: 132 -----VWNIWKCRNSVLHNKIKANKETLENLISNSINLCSVSSVSGSSVDM------PTS 191
                +W IWK RN  + + ++A+      L+     L  VS    +  D+      P S
Sbjct: 741 WFVFGLWRIWKARNLAVFDGVQADPTEAVLLL-----LKQVSEFRTAKQDLQPQPLQPVS 800

Query: 192 LPRSCDRWTPPWIETWKLNVDGSWKEDSGNGGVGWL-----GMQM-----GELRRKCANV 251
            P     W  P     K+N D +W      GGVGW+     G+ +     G+L    A +
Sbjct: 801 SPAPLS-WCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIM 860

Query: 252 MECLVIRDGLRHILDCGVDLPNEILVESDSSAIICLLNGVSQDVTEISNIVADIREMIPR 309
           ME L IR  L    +C      +I+VESDS   I +LNG +   +++  IV DIR+++  
Sbjct: 861 MELLAIRHALS---ECANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVAS 920

[Close]

BLAST of Sed0013483 vs. NCBI nr
Match: CAB4274760.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 119.0 bits (297), Expect = 7.4e-23
Identity = 87/319 (27.27%), Postives = 138/319 (43.26%), Query Frame = 0


Query: 12   SNNSMMAKIWNSFWKVEIAPMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEA 71
            S++S  + +W S W V+  P +K  +W    N +  + N+  + V     C  CG  +E 
Sbjct: 949  SSSSSQSSVWKSVWHVDAPPKLKAFIWCGCSNILAVRHNLHRRRVPCTGECGFCGFQDET 1008

Query: 72   NLHLVKECKLAIHAWKSIFPFFTDFASFFRSADSGESF---WHGICTKIPRDEYFKAIII 131
              H+  EC  A   W      F        S  +GE F   W  + T +   E+    I 
Sbjct: 1009 QAHIFFECDFARAFW------FASPLQLDVSKLAGEDFISTWQHMMTTLNSSEHAAEAIQ 1068

Query: 132  -----VWNIWKCRNSVLHNKIKANKETLENLISNSINLCSVSSVSGSSVD----MPTSLP 191
                 +W IWK RN  + + ++A+   +  L+   ++    +      +      P S P
Sbjct: 1069 WFVFGLWRIWKARNLAVFDGVQADPTEVVLLLLKQVSEFRTAKHDLQDLQPQPLQPASSP 1128

Query: 192  RSCDRWTPPWIETWKLNVDGSWKEDSGNGGVGWL-----GMQM-----GELRRKCANVME 251
                 W  P +   K+N D +W      GGVGW+     G+ +     G+L    A +ME
Sbjct: 1129 APLS-WCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMME 1188

Query: 252  CLVIRDGLRHILDCGVDLPNEILVESDSSAIICLLNGVSQDVTEISNIVADIREMIPRFR 309
             L IR  L    +C      +I+VESDS   I +LNG +   +++  IV DIR+++    
Sbjct: 1189 LLAIRHALS---ECANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLS 1248

[Close]

BLAST of Sed0013483 vs. NCBI nr
Match: CAB4274761.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 119.0 bits (297), Expect = 7.4e-23
Identity = 87/319 (27.27%), Postives = 138/319 (43.26%), Query Frame = 0


Query: 12  SNNSMMAKIWNSFWKVEIAPMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEA 71
           S++S  + +W S W V+  P +K  +W    N +  + N+  + V     C  CG  +E 
Sbjct: 81  SSSSSQSSVWKSVWHVDAPPKLKAFIWCGCSNILAVRHNLHRRRVPCTGECGFCGFQDET 140

Query: 72  NLHLVKECKLAIHAWKSIFPFFTDFASFFRSADSGESF---WHGICTKIPRDEYFKAIII 131
             H+  EC  A   W      F        S  +GE F   W  + T +   E+    I 
Sbjct: 141 QAHIFFECDFARAFW------FASPLQLDVSKLAGEDFISTWQHMMTTLNSSEHAAEAIQ 200

Query: 132 -----VWNIWKCRNSVLHNKIKANKETLENLISNSINLCSVSSVSGSSVD----MPTSLP 191
                +W IWK RN  + + ++A+   +  L+   ++    +      +      P S P
Sbjct: 201 WFVFGLWRIWKARNLAVFDGVQADPTEVVLLLLKQVSEFRTAKHDLQDLQPQPLQPASSP 260

Query: 192 RSCDRWTPPWIETWKLNVDGSWKEDSGNGGVGWL-----GMQM-----GELRRKCANVME 251
                W  P +   K+N D +W      GGVGW+     G+ +     G+L    A +ME
Sbjct: 261 APLS-WCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMME 320

Query: 252 CLVIRDGLRHILDCGVDLPNEILVESDSSAIICLLNGVSQDVTEISNIVADIREMIPRFR 309
            L IR  L    +C      +I+VESDS   I +LNG +   +++  IV DIR+++    
Sbjct: 321 LLAIRHALS---ECANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLS 380

[Close]

BLAST of Sed0013483 vs. NCBI nr
Match: CAB4321714.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-22
Identity = 89/317 (28.08%), Postives = 133/317 (41.96%), Query Frame = 0


Query: 12  SNNSMMAKIWNSFWKVEIAPMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEA 71
           S++S  + +W S W V+  P +K  +W    N +  + N+  + V     C  CG  +E 
Sbjct: 176 SSSSSQSSVWKSVWHVDAPPKLKAFIWRGCSNILAVRHNLHRRSVPCTGECGFCGFQDET 235

Query: 72  NLHLVKECKLAIHAWKSIFPFFTDFASFFRSADSGESF---WHGICTKIPRDEYFKAIII 131
             H+  EC  A   W      F        S  +GE F   W  + T +   E+    I 
Sbjct: 236 QAHIFFECDFARAFW------FASPLQLDVSKLAGEDFISTWQHMMTTLNSSEHAAEAIQ 295

Query: 132 -----VWNIWKCRNSVLHNKIKANKETLENLISNSINLCSVSSVSGSSVDM------PTS 191
                +W IWK RN  + + ++A+      L+     L  VS    +  D+      P S
Sbjct: 296 WFVFGLWRIWKARNLAVFDGVQADPTEAVLLL-----LKQVSEFRTAKQDLQPQPLQPVS 355

Query: 192 LPRSCDRWTPPWIETWKLNVDGSWKEDSGNGGVGWL----------GMQMGELRRKCANV 251
            P     W  P     K+N D +W      GGVGW+              G+L    A +
Sbjct: 356 SPAPLS-WCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFSLLLCAGGQGDLHGSSALM 415

Query: 252 MECLVIRDGLRHILDCGVDLPNEILVESDSSAIICLLNGVSQDVTEISNIVADIREMIPR 305
           ME L IR  L    +C      +I+VESDS   I +LNG +   +++  IV DIR+++  
Sbjct: 416 MELLAIRHALS---ECANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVAS 475

[Close]

BLAST of Sed0013483 vs. NCBI nr
Match: XP_030479022.1 (uncharacterized protein LOC115696252 [Cannabis sativa])

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-22
Identity = 79/307 (25.73%), Postives = 144/307 (46.91%), Query Frame = 0


Query: 17   MAKIWNSFWKVEIAPMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEANLHLV 76
            ++  WNS W++ + P +K  +W    N +P+K  +Q + V I+S+C LC  + E +LHL 
Sbjct: 953  LSPFWNSLWQLSLPPRVKDLLWRTCSNSLPTKVQLQTRHVAIDSTCSLCHASPETSLHLF 1012

Query: 77   KECKLAIHAWKSIFPFFTDFASFFRSADSGESFW-HGICTKIPRDEYFKAIIIVWNIWKC 136
              C  A +  +++     D      S +S  + W H + +  P  E     ++ W IW+C
Sbjct: 1013 VNCSFAKNCIRNVHGSARD------SVESTFAAWFHHVLSHWPASEIESISMLCWAIWRC 1072

Query: 137  RNSVLHNKIKANKETLENLISNSINL---CSVSSVSGSSVDMPTSLPRSCDRWTPPWIET 196
            RN ++ NK + + + +  + S ++ L    S  S+S +  +  TS   S +RWT P    
Sbjct: 1073 RNDLIWNKTQPSVDRV--ISSTTLTLDQWKSAQSLSKTLSNSATSTTNSLERWTKPTYPM 1132

Query: 197  WKLNVDGSWKEDSGNGGVGW----------LGMQMGELRRKCANVMECLVIRDGLRHILD 256
             K+NVD +   +  + G G+          L  Q  +L    A + E + I++ L  I  
Sbjct: 1133 IKVNVDAATFANQKSFGWGFVARDHDGSFLLAFQSSKLGSVRAEIAEAVAIKEALSWI-- 1192

Query: 257  CGVDLPNEILVESDSSAIICLLNGVSQDVTEISNIVADIREMIPRFRSISFSFCRRECNR 310
               +    + VESD   ++  +N      +   +I+ D ++++    ++S SF +R  N 
Sbjct: 1193 -KANNWQNVQVESDCLNVVHAINNKVHMFSPYGSIINDSKQLLSVLFNVSISFVKRSANN 1248

[Close]

BLAST of Sed0013483 vs. ExPASy TrEMBL
Match: A0A6J5WPU6 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20372 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.8e-23
Identity = 91/321 (28.35%), Postives = 139/321 (43.30%), Query Frame = 0


Query: 12  SNNSMMAKIWNSFWKVEIAPMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEA 71
           S++S  + +W S W V+  P +K  +W    N +  + N++ + V     C  CG  +E 
Sbjct: 621 SSSSSQSSVWKSVWHVDAPPKLKAFIWRGCSNILAVRHNLRRRRVPYTGECGFCGFQDET 680

Query: 72  NLHLVKECKLAIHAWKSIFPFFTDFASFFRSADSGESF---WHGICTKIPRDEYFKAIII 131
             H+  EC  A   W      F        S  +GE F   W  + T +   E+    I 
Sbjct: 681 QAHIFFECDFARAFW------FASPLQLDVSKLAGEDFISTWQHMMTTLNSSEHAAEAIQ 740

Query: 132 -----VWNIWKCRNSVLHNKIKANKETLENLISNSINLCSVSSVSGSSVDM------PTS 191
                +W IWK RN  + + ++A+      L+     L  VS    +  D+      P S
Sbjct: 741 WFVFGLWRIWKARNLAVFDGVQADPTEAVLLL-----LKQVSEFRTAKQDLQPQPLQPVS 800

Query: 192 LPRSCDRWTPPWIETWKLNVDGSWKEDSGNGGVGWL-----GMQM-----GELRRKCANV 251
            P     W  P     K+N D +W      GGVGW+     G+ +     G+L    A +
Sbjct: 801 SPAPLS-WCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIM 860

Query: 252 MECLVIRDGLRHILDCGVDLPNEILVESDSSAIICLLNGVSQDVTEISNIVADIREMIPR 309
           ME L IR  L    +C      +I+VESDS   I +LNG +   +++  IV DIR+++  
Sbjct: 861 MELLAIRHALS---ECANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVAS 920

[Close]

BLAST of Sed0013483 vs. ExPASy TrEMBL
Match: A0A6J5UE59 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23353 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-23
Identity = 87/319 (27.27%), Postives = 138/319 (43.26%), Query Frame = 0


Query: 12   SNNSMMAKIWNSFWKVEIAPMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEA 71
            S++S  + +W S W V+  P +K  +W    N +  + N+  + V     C  CG  +E 
Sbjct: 949  SSSSSQSSVWKSVWHVDAPPKLKAFIWCGCSNILAVRHNLHRRRVPCTGECGFCGFQDET 1008

Query: 72   NLHLVKECKLAIHAWKSIFPFFTDFASFFRSADSGESF---WHGICTKIPRDEYFKAIII 131
              H+  EC  A   W      F        S  +GE F   W  + T +   E+    I 
Sbjct: 1009 QAHIFFECDFARAFW------FASPLQLDVSKLAGEDFISTWQHMMTTLNSSEHAAEAIQ 1068

Query: 132  -----VWNIWKCRNSVLHNKIKANKETLENLISNSINLCSVSSVSGSSVD----MPTSLP 191
                 +W IWK RN  + + ++A+   +  L+   ++    +      +      P S P
Sbjct: 1069 WFVFGLWRIWKARNLAVFDGVQADPTEVVLLLLKQVSEFRTAKHDLQDLQPQPLQPASSP 1128

Query: 192  RSCDRWTPPWIETWKLNVDGSWKEDSGNGGVGWL-----GMQM-----GELRRKCANVME 251
                 W  P +   K+N D +W      GGVGW+     G+ +     G+L    A +ME
Sbjct: 1129 APLS-WCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMME 1188

Query: 252  CLVIRDGLRHILDCGVDLPNEILVESDSSAIICLLNGVSQDVTEISNIVADIREMIPRFR 309
             L IR  L    +C      +I+VESDS   I +LNG +   +++  IV DIR+++    
Sbjct: 1189 LLAIRHALS---ECANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLS 1248

[Close]

BLAST of Sed0013483 vs. ExPASy TrEMBL
Match: A0A6J5UF50 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23354 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.6e-23
Identity = 87/319 (27.27%), Postives = 138/319 (43.26%), Query Frame = 0


Query: 12  SNNSMMAKIWNSFWKVEIAPMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEA 71
           S++S  + +W S W V+  P +K  +W    N +  + N+  + V     C  CG  +E 
Sbjct: 81  SSSSSQSSVWKSVWHVDAPPKLKAFIWCGCSNILAVRHNLHRRRVPCTGECGFCGFQDET 140

Query: 72  NLHLVKECKLAIHAWKSIFPFFTDFASFFRSADSGESF---WHGICTKIPRDEYFKAIII 131
             H+  EC  A   W      F        S  +GE F   W  + T +   E+    I 
Sbjct: 141 QAHIFFECDFARAFW------FASPLQLDVSKLAGEDFISTWQHMMTTLNSSEHAAEAIQ 200

Query: 132 -----VWNIWKCRNSVLHNKIKANKETLENLISNSINLCSVSSVSGSSVD----MPTSLP 191
                +W IWK RN  + + ++A+   +  L+   ++    +      +      P S P
Sbjct: 201 WFVFGLWRIWKARNLAVFDGVQADPTEVVLLLLKQVSEFRTAKHDLQDLQPQPLQPASSP 260

Query: 192 RSCDRWTPPWIETWKLNVDGSWKEDSGNGGVGWL-----GMQM-----GELRRKCANVME 251
                W  P +   K+N D +W      GGVGW+     G+ +     G+L    A +ME
Sbjct: 261 APLS-WCKPSLGLLKVNCDAAWSAQRMGGGVGWVIRDSFGLLLCAGGQGDLHGSSAIMME 320

Query: 252 CLVIRDGLRHILDCGVDLPNEILVESDSSAIICLLNGVSQDVTEISNIVADIREMIPRFR 309
            L IR  L    +C      +I+VESDS   I +LNG +   +++  IV DIR+++    
Sbjct: 321 LLAIRHALS---ECANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVASLS 380

[Close]

BLAST of Sed0013483 vs. ExPASy TrEMBL
Match: A0A6J5YDN0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS50956 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.0e-23
Identity = 89/317 (28.08%), Postives = 133/317 (41.96%), Query Frame = 0


Query: 12  SNNSMMAKIWNSFWKVEIAPMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEA 71
           S++S  + +W S W V+  P +K  +W    N +  + N+  + V     C  CG  +E 
Sbjct: 176 SSSSSQSSVWKSVWHVDAPPKLKAFIWRGCSNILAVRHNLHRRSVPCTGECGFCGFQDET 235

Query: 72  NLHLVKECKLAIHAWKSIFPFFTDFASFFRSADSGESF---WHGICTKIPRDEYFKAIII 131
             H+  EC  A   W      F        S  +GE F   W  + T +   E+    I 
Sbjct: 236 QAHIFFECDFARAFW------FASPLQLDVSKLAGEDFISTWQHMMTTLNSSEHAAEAIQ 295

Query: 132 -----VWNIWKCRNSVLHNKIKANKETLENLISNSINLCSVSSVSGSSVDM------PTS 191
                +W IWK RN  + + ++A+      L+     L  VS    +  D+      P S
Sbjct: 296 WFVFGLWRIWKARNLAVFDGVQADPTEAVLLL-----LKQVSEFRTAKQDLQPQPLQPVS 355

Query: 192 LPRSCDRWTPPWIETWKLNVDGSWKEDSGNGGVGWL----------GMQMGELRRKCANV 251
            P     W  P     K+N D +W      GGVGW+              G+L    A +
Sbjct: 356 SPAPLS-WCKPPPGLLKVNCDAAWSAQRMGGGVGWVIRDSFSLLLCAGGQGDLHGSSALM 415

Query: 252 MECLVIRDGLRHILDCGVDLPNEILVESDSSAIICLLNGVSQDVTEISNIVADIREMIPR 305
           ME L IR  L    +C      +I+VESDS   I +LNG +   +++  IV DIR+++  
Sbjct: 416 MELLAIRHALS---ECANFHLTDIIVESDSQKGILMLNGRATVDSDLEGIVFDIRQLVAS 475

[Close]

BLAST of Sed0013483 vs. ExPASy TrEMBL
Match: A0A6J5UAY2 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20161 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.4e-21
Identity = 81/322 (25.16%), Postives = 138/322 (42.86%), Query Frame = 0


Query: 12   SNNSMMAKIWNSFWKVEIAPMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEA 71
            S      +IW S W +++ P I+  +W   +N +  K N+  + +D+ +SC LCG+  E+
Sbjct: 967  SQGDKQRRIWKSIWGLQVPPKIRTFLWKCCRNVLAVKENLLHRGIDVETSCALCGQEGES 1026

Query: 72   NLHLVKECKLAIHAWKSIFPFFTDFASFFRSADSGESF---WHGICTKIPRDEYFKAIII 131
             +H+  +C+ A   W +  P   D          GE F   W  +  K  + E+   I+ 
Sbjct: 1027 QVHVFFKCEFARLLWFA-SPIQLDPCHIL-----GEDFIVCWENLLKKYEQVEHCNDILQ 1086

Query: 132  V-----WNIWKCRNSVLHNKIKANKETLENLISNSINLCSVSSVSGSSVDMPTSLPR--- 191
            V     W IWK RN  +                + ++    + + G    +   LPR   
Sbjct: 1087 VCAFGLWRIWKIRNGAVFEGTVIEPHVAVECFLDQVHEFRTAQMHGK--PLINELPRPPE 1146

Query: 192  ----SCDRWTPPWIETWKLNVDGSWKEDSGNGGVGWLGMQ----------MGELRRKCAN 251
                +   W  P     K+N D +W   +  GGVGW+              G++R   A 
Sbjct: 1147 VQAETVTSWRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGDMRGGSAL 1206

Query: 252  VMECLVIRDGLRHILDCGVDLPNEILVESDSSAIICLLNGVSQDVTEISNIVADIREMIP 309
             ME   IR+ L   +  G+   +++ VESDS  +I ++ G       +  IV DI++++ 
Sbjct: 1207 AMEAEAIREALVACVQSGL---SKLEVESDSLQVIRMIGGEWNMDIAVDTIVFDIKQLVG 1266

[Close]

BLAST of Sed0013483 vs. TAIR 10
Match: AT1G10000.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-13
Identity = 71/295 (24.07%), Postives = 118/295 (40.00%), Query Frame = 0


Query: 31  PMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEANLHLVKECKLAIHAWKSIF 90
           P IK+ +W      +P  A +  + +     C  CG A E + H++  C  A   W ++ 
Sbjct: 2   PKIKLFLWKAAAGALPVGAQLVRRHISSTWDCARCG-APETSTHMLFHCDFAAQVW-NLA 61

Query: 91  PFFTDFASFFRSADSGESFWHGICTKIPRDEYFKAII--IVWNIWKCRNS-VLHNKIKAN 150
           P                +         P   +   +   I W+IWK RN  +  N   + 
Sbjct: 62  PLQLGHIPIGTPILEALNLLKKTIVLPPVGIHTATLFPWICWHIWKARNQLIFQNSHFSV 121

Query: 151 KETLENLISNSINLCSVSSVSGSSVDMPTSLPRSCDRWTPPWIETWKLNVDGSWKEDSGN 210
            ET+   + +++   S + ++   V + T  P S    T  ++      VD +W++ S  
Sbjct: 122 IETVTKAVQDALAWQS-AQLALPKVRVATPRPNSTTTLTHDFL----CYVDAAWQQQSSL 181

Query: 211 GGVGWLGMQMGELRRKCAN------------VMECLVIRDGLRHILDCGVDLPNEILVES 270
            G GW+        ++                 E   I+  + H L       +++LV S
Sbjct: 182 AGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHALQLE---RSDLLVLS 241

Query: 271 DSSAIICLLNGVSQDVTEISNIVADIREMIPRFRSISFSFCRRECNRAADLLAKL 311
           DS +I+  LN  +  + EI  ++ +IR +  RFRSISF F  R  N  AD  AKL
Sbjct: 242 DSKSIVDALNS-NVSLNEIFGLLVEIRSIRNRFRSISFQFIPRLVNSIADAAAKL 285

[Close]

BLAST of Sed0013483 vs. TAIR 10
Match: AT4G09490.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.7e-04
Identity = 37/132 (28.03%), Postives = 59/132 (44.70%), Query Frame = 0


Query: 188 PWIETWKLNVDGSWKEDSGNGGVGWLGMQMGEL-----RRKCANV-----MECLVIRDGL 247
           P ++   +  D +WK ++ + G GW+     EL     +    NV      E + +   L
Sbjct: 26  PDLDRVTIFTDAAWKHETKDVGFGWVIRNCPELTALHYQSAARNVRLPLMAEAIALFLAL 85

Query: 248 RHILDCGVDLPNEILVESDSSAIICLLNGVSQDVTEISNIVADIREMIPRFRSISFSFCR 307
           ++    G+    ++ + SDS  +I  +   S   TE   I+ DI  +   F  +SFSF  
Sbjct: 86  QYAQSIGI---TKLSMASDSQQLITAITSESPS-TEFYGIIFDILNLSLGFADVSFSFVP 145

Query: 308 RECNRAADLLAK 310
           R  NR AD LAK
Sbjct: 146 RSENRVADELAK 153

[Close]

BLAST of Sed0013483 vs. TAIR 10
Match: AT1G60720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 44.3 bits (103), Expect = 2.2e-04
Identity = 30/128 (23.44%), Postives = 51/128 (39.84%), Query Frame = 0


Query: 25  WKVEIAPMIKMGVWNVLKNFIPSKANIQAKEVDINSSCILCGRANEANLHLVKECKLAIH 84
           W     P     +W    + +P++  + +     +  C LC    E+  HL+  C+ A  
Sbjct: 132 WFKGAVPKHAFNMWISQLDRLPTRQRLASWGHIQSFDCCLCTIETESRDHLLFSCEFAAQ 191

Query: 85  AWKSIFP-------FFTDFASFFRSADSGESFWHGICTKIPRDEYFKAIIIVWNIWKCRN 144
            W+  F         F  +A       S  S    +  K+       A  I++NIW+ RN
Sbjct: 192 VWRLAFSRLCPRQRLFCSWAELLSWMRSSSSSAPSLLRKV------SAHAIIYNIWRQRN 251

Query: 145 SVLHNKIK 146
           +VLHN ++
Sbjct: 252 NVLHNNLR 253

The following BLAST results are available for this feature:

BLAST of Sed0013483 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB4303756.1	5.7e-23	28.35	unnamed protein product [Prunus armeniaca]	[more]
CAB4274760.1	7.4e-23	27.27	unnamed protein product [Prunus armeniaca]	[more]
CAB4274761.1	7.4e-23	27.27	unnamed protein product [Prunus armeniaca]	[more]
CAB4321714.1	1.7e-22	28.08	unnamed protein product [Prunus armeniaca]	[more]
XP_030479022.1	1.7e-22	25.73	uncharacterized protein LOC115696252 [Cannabis sativa]	[more]

BLAST of Sed0013483 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013483 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J5WPU6	2.8e-23	28.35	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5UE59	3.6e-23	27.27	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J5UF50	3.6e-23	27.27	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS23354 PE=4 S...	[more]
A0A6J5YDN0	8.0e-23	28.08	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS50956 PE=...	[more]
A0A6J5UAY2	4.4e-21	25.16	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]

BLAST of Sed0013483 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10000.1	4.4e-13	24.07	Ribonuclease H-like superfamily protein	[more]
AT4G09490.1	1.7e-04	28.03	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G60720.1	2.2e-04	23.44	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 16..86 e-value: 3.3E-13 score: 50.1
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 196..310 e-value: 2.8E-18 score: 65.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 192..312 e-value: 4.0E-12 score: 48.2
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 181..311
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 195..309 e-value: 5.7122E-20 score: 81.9768
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 192..312

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013483.1	Sed0013483.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity