Sed0013394 (gene) Chayote v1

Overview


Name	Sed0013394
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L18
Location	LG11: 2449062 .. 2452378 (+)
RNA-Seq Expression	Sed0013394
Synteny	Sed0013394

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAAAAATAGATAATAAAATCTAAAACTGGAACTAATGTTTATACTCTTAATTTTTTAAAAAATAAAAACCAAAATTTTTATTGATTAGGGTTAATTTATTCTAGTTTCTAACCCTATATAACTTGATTTTTTAAAATATAAATAAAAGGGAATTTACTCATGACAACAACTTTTGGGTATAATTATAACATTTTTCTTTGTAAAATACTGTTTTAATTTTTTTTTTTTTAATTTTACTTTTTACCGATCAAGCATCGATTGAGAGCTATTGATAGGAGCATAGACATAACAATTGAAATGTGACTATAAAATTAAAATAGATTACCATTCATCAAGATAATTAACGTGCTACCAACCCATTTAATTAAAAAAGAAATAATTGTATTTTCACATAATTTCTAATAAGAATTTATTAAGTAGTGAAACTGTCATGGTGCGTCCCTTTTAAAAAAAAATCCCTAATTGTTCCTGCCTCTGTCAATTCTCACGCAAATTCACCTGCTGGCCTTGCACCACTCCACGCGATTGCAGGCGACGGGGACGGTGACGGCTTCAGCTCCGGCAACGACGGACGGTGGCGGTAAACTCGAACAGAGTCGGCAGTGACCATTTACTGAAATTTCTCTCTTTGGGTAGGCATGACAATTTTCTTCACAATTTCCTCTTGACAAAATCTATTCAAAGTTTATTCTTTGTTTTGCTGTGCTTCTTGTTACATTGTTGCTCGAGGAACAAAACTTGGGTTGTTTGCTAGTTGTATATTTAAGAGGTATTTGACTATGGATACCTATTGTTAGTTTTTGTTTTGTGCTCTTTATTGCATTGTTTCTAAATATGAGACATACGAGAAGAAAGAATGAATGGGGAAGTTTTTGTTTATTTATTTATTGTAGTCTTACTCAAATCGAACTGTGGAGAATTTTTGGTTGAAATAGCAAGGGAATGTGTATCAATCTTTGTTCTCTTCTTATATGTTGGTATCCAAATGGCAACCTGGAAGCGTCCCCAAGGGGTGGCACGGTGGTTGAAGGCTTAAGTTTGGAAGTTGTGCTCCTTTAAAATCCCAGTTTCGAGATTCACCTAGACACGTCTCGTGGGCCCATTTCTTCGATGTCTCTCACTGCTTGTCTAGGGACGGACGTGGTTATTCTAGGTATAGTGGAACGAACTCCAATTTCCTGGTTTTCAAAAACAAATTTTAAAGTGGAAGCTTAATTGATGATGCTGTAGAAGAAGATTGAATTATTGCAGGAAGTTGTTTGCCTCTTGGGTTCCCTTCATTTATATCTTGTTGGTTAATATCTCTCTCGGCTATTGCTTTCTTTGTGGAGTTTTGGTTTTGGGTGGCCAATAATGCACATAACTTGTTCGAATGCATCACTTCTTCCATTTTTCTCTTGTTTTTAATATTTGAAGTGTTTATTAGAATCTAATGCCAATTCTGCATTGCCTGATAATGTTCGACACAATGCCTCATTGAGAATGGATCTGGATGTGTGTTCTTCTTTGTTAAATTTAAACCTTCTCCAAATGCACATGATGCTCATTTAGTTCTGTGATCTGTTTATTAAAATCTTGAGATATTTCGTATGACATGGGAGATATAATATTTCACTTTCTTTATAGGTGTTCACAGGAGTTGAAATTGGGTTAGTACAAAAAGAGGGTTGGTTTGTAGAAAAAGGAAAACATGTTGATGAAACACTTTCTTGCAAATATGCGGAAACACGTGGTTTGTGCACATGAAGTAAACAGCATTAGGCCTTATTTGTTTGTGCCAACAAGTGAATTTCATAAGGGGGAGGTAAAATTTTCTTGCCTTAGCTATTAATGTTCTTGTTTGAAAAGTTACAAGTTACCAAACTTCTATAGCAAGCCTATCAAGGCTTCCTTCAAAAGAAAAGATTATACACAATTGACAATACATCTTCATCTTCAAAATCACAAGATTCCACTTTTTTGTCTGGTGAGAATAGTCGAAGTGCGTGGAATCTTGCTTGGACACTTATGGATAAAAAATGATTCCACTGTTTACAAATTTACATTCTATACTAAGGTAACCCCATATACCAGAAAACCATATTTACTTGCACCTTCTTGCACCTTCATCTTCAAAATCACAGGATTCCACTTTTTGAAAAGCTTTAGATAGACCACATCAAGAATATACACAAAGTTTAAAAAATTCTTTCCATGAGGAGGAGCACATTTGCTATCAAGGATCCTTTTCTCTCAATCTAAAATTCCCAAATGGTTGACTTGACAATGTTGATCCAAAGAATCCAAGCTCTGCATAAGGAATAAGGAATTAAGATTACCTTTATCTCTGAAATTAATAATCCAGGCACTTCCAGTTCCAGATAACTTACAATATACCTCTCTTAAGCTTAAATATATAGGAGCTTGGAAGTAAATGGTAACATAGGTCAAATGGTTATCGATGCAAGCAAACACTTGATGAATTAAAAAAAAAGTTGTGGAATTGGATACCATATTATCCACCATGGGGCTAATTGTGAAATTATCTCTAGAAGTCGATGAGATGTTGATTACAAACTAGGTAACTAAGGGTTTGACAATAATTCATCCTCATAAATTGGTCTTAAAATAAAAAATATTGAATTTAATCAATATACACATATCACCTTTATCCTTCCTCACTCATAGAAGTGTCGATCATTAATAATTGACTAAATTTAACTAATTGACATTTTTAAACCTTGATACCTTGATTATCCAACTTTGATTGATGTTCTATCATAGGTTCGTGCAGCTAGAAGTTTTTTTGGTGTTGAAGATTTCTTAGATGATGAAAACAGTCGGCCTTATACATATCAAAAGGGGAAGGTATCCAAAAATCCCAAGAAGCACATATCATTTAAGAAACGGACAGTAGCCTACATGGAACCATTTACACTCGACGTTTTAATCTCAAAGCGGTTCGTTTCGGCATCACTTACGCATAGGGCGACTTTCAAACAAGTTGCAGTTGCAGGTACGAACTCAAAAGATATTAAAGCTGTTCTTAAATCTCGTTCAGACATACCTGCTTGCTTGGCTGTTGGTGCTATTTTAGCTGAGAGAGCTAGAGAAGCTGATGTTTATACTGCGAGTTATACCCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATAGATGTGAAAATTTATCTGGAGTAGAATAGCAGATCTTGTTTCTGAAACATCACTTCTGAATCTTTGATTAATGGTCTTTTGAATTTTTCACTCAGCTGTTATAATAATATCAAGCTAACTTCCCA

mRNA sequence

TTTTAAAAATAGATAATAAAATCTAAAACTGGAACTAATGTTTATACTCTTAATTTTTTAAAAAATAAAAACCAAAATTTTTATTGATTAGGGTTAATTTATTCTAGTTTCTAACCCTATATAACTTGATTTTTTAAAATATAAATAAAAGGGAATTTACTCATGACAACAACTTTTGGGTATAATTATAACATTTTTCTTTGTAAAATACTGTTTTAATTTTTTTTTTTTTAATTTTACTTTTTACCGATCAAGCATCGATTGAGAGCTATTGATAGGAGCATAGACATAACAATTGAAATGTGACTATAAAATTAAAATAGATTACCATTCATCAAGATAATTAACGTGCTACCAACCCATTTAATTAAAAAAGAAATAATTGTATTTTCACATAATTTCTAATAAGAATTTATTAAGTAGTGAAACTGTCATGGTGCGTCCCTTTTAAAAAAAAATCCCTAATTGTTCCTGCCTCTGTCAATTCTCACGCAAATTCACCTGCTGGCCTTGCACCACTCCACGCGATTGCAGGCGACGGGGACGGTGACGGCTTCAGCTCCGGCAACGACGGACGGTGGCGGTAAACTCGAACAGAGTCGGCAGTGACCATTTACTGAAATTTCTCTCTTTGGGTGTTCACAGGAGTTGAAATTGGGTTAGTACAAAAAGAGGGTTGGTTTGTAGAAAAAGGAAAACATGTTGATGAAACACTTTCTTGCAAATATGCGGAAACACGTGGTTTGTGCACATGAAGTAAACAGCATTAGGCCTTATTTGTTTGTGCCAACAAGTGAATTTCATAAGGGGGAGGTTCGTGCAGCTAGAAGTTTTTTTGGTGTTGAAGATTTCTTAGATGATGAAAACAGTCGGCCTTATACATATCAAAAGGGGAAGGTATCCAAAAATCCCAAGAAGCACATATCATTTAAGAAACGGACAGTAGCCTACATGGAACCATTTACACTCGACGTTTTAATCTCAAAGCGGTTCGTTTCGGCATCACTTACGCATAGGGCGACTTTCAAACAAGTTGCAGTTGCAGGTACGAACTCAAAAGATATTAAAGCTGTTCTTAAATCTCGTTCAGACATACCTGCTTGCTTGGCTGTTGGTGCTATTTTAGCTGAGAGAGCTAGAGAAGCTGATGTTTATACTGCGAGTTATACCCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATAGATGTGAAAATTTATCTGGAGTAGAATAGCAGATCTTGTTTCTGAAACATCACTTCTGAATCTTTGATTAATGGTCTTTTGAATTTTTCACTCAGCTGTTATAATAATATCAAGCTAACTTCCCA

Coding sequence (CDS)

ATGTTGATGAAACACTTTCTTGCAAATATGCGGAAACACGTGGTTTGTGCACATGAAGTAAACAGCATTAGGCCTTATTTGTTTGTGCCAACAAGTGAATTTCATAAGGGGGAGGTTCGTGCAGCTAGAAGTTTTTTTGGTGTTGAAGATTTCTTAGATGATGAAAACAGTCGGCCTTATACATATCAAAAGGGGAAGGTATCCAAAAATCCCAAGAAGCACATATCATTTAAGAAACGGACAGTAGCCTACATGGAACCATTTACACTCGACGTTTTAATCTCAAAGCGGTTCGTTTCGGCATCACTTACGCATAGGGCGACTTTCAAACAAGTTGCAGTTGCAGGTACGAACTCAAAAGATATTAAAGCTGTTCTTAAATCTCGTTCAGACATACCTGCTTGCTTGGCTGTTGGTGCTATTTTAGCTGAGAGAGCTAGAGAAGCTGATGTTTATACTGCGAGTTATACCCCTAGAGAGAGGGACAAATTTGAAGGCAAAATAAGAGCTGTGGTTCAGTCTCTTATTGATAATGGGATAGATGTGAAAATTTATCTGGAGTAG

Protein sequence

MLMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

Homology

[Close]

BLAST of Sed0013394 vs. NCBI nr
Match: XP_022150717.1 (uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncharacterized protein LOC111018783 [Momordica charantia])

HSP 1 Score: 327.4 bits (838), Expect = 8.0e-86
Identity = 167/187 (89.30%), Postives = 174/187 (93.05%), Query Frame = 0


Query: 2   LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPY 61
           ++KHFL  MRKHVVC  EVN +RPY FVPTS+FHKGEV  A RSFFGVEDFLDD+NSRPY
Sbjct: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60

Query: 62  TYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSK 121
           TYQKGK SKNPKKHISFK+RTVAYMEPFTLDV ISKRFVSASLTHR T KQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 122 DIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
           DIKAVLKSRSDIPACLAVG+ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 182 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Sed0013394 vs. NCBI nr
Match: XP_038890306.1 (50S ribosomal protein L18 [Benincasa hispida])

HSP 1 Score: 326.2 bits (835), Expect = 1.8e-85
Identity = 167/187 (89.30%), Postives = 174/187 (93.05%), Query Frame = 0


Query: 2   LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPY 61
           +++HFL NMRKHVVCA EVN +RPYL VPTS+FHKGEV  A RSFFGVEDFLDD+NSRPY
Sbjct: 1   MLRHFLGNMRKHVVCACEVNRVRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDDNSRPY 60

Query: 62  TYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSK 121
           TYQK K SKNPKKHISFK+RTVAYMEPFTLDV ISKRFVSASLTHR T KQVAVAGTNSK
Sbjct: 61  TYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 122 DIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
           DIKAVLKSRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 182 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Sed0013394 vs. NCBI nr
Match: XP_004139203.1 (uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736382.1 uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736383.1 uncharacterized protein LOC101215592 [Cucumis sativus] >KGN60851.1 hypothetical protein Csa_019355 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 5.2e-85
Identity = 165/187 (88.24%), Postives = 173/187 (92.51%), Query Frame = 0


Query: 2   LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAA-RSFFGVEDFLDDENSRPY 61
           ++KHFL NMRKHVVCA EVN  RPYL VPTS+FHKGEV  A RSFFG+EDFLDD+NSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 62  TYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSK 121
           TYQK K SKNPKKHISFK+RT+AYMEPFTLDV ISKRFVSASLTHR T KQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 122 DIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
           DIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 182 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Sed0013394 vs. NCBI nr
Match: XP_022999138.1 (uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharacterized protein LOC111493611 [Cucurbita maxima])

HSP 1 Score: 322.8 bits (826), Expect = 2.0e-84
Identity = 163/187 (87.17%), Postives = 173/187 (92.51%), Query Frame = 0


Query: 2   LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPY 61
           ++KH L NMRKHVVC+ EVN  RPYLFVPTS+FHKGE   A RSFFGVEDF+DD+NSRPY
Sbjct: 1   MLKHLLGNMRKHVVCSCEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 62  TYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSK 121
           TYQKGK SKNPKKH+SFK+RTVAYMEPFTLDV ISKRFVSASLTHR T KQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 122 DIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
           DIKAVLKSRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 182 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Sed0013394 vs. NCBI nr
Match: XP_008455473.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 50S ribosomal protein L18 [Cucumis melo])

HSP 1 Score: 322.4 bits (825), Expect = 2.6e-84
Identity = 165/187 (88.24%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAA-RSFFGVEDFLDDENSRPY 61
           ++KHFL NM KHVVCA EVN  RPYL VPTS+FHKGEV  A RSFFGVEDFLDD+NSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 62  TYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSK 121
           TYQK K SKNPKKHISFK+RT+AYMEPFTLDV ISKRFVSASLTHR T KQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 122 DIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
           DIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 182 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Sed0013394 vs. ExPASy TrEMBL
Match: A0A6J1DBH5 (uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018783 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 3.9e-86
Identity = 167/187 (89.30%), Postives = 174/187 (93.05%), Query Frame = 0


Query: 2   LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPY 61
           ++KHFL  MRKHVVC  EVN +RPY FVPTS+FHKGEV  A RSFFGVEDFLDD+NSRPY
Sbjct: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60

Query: 62  TYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSK 121
           TYQKGK SKNPKKHISFK+RTVAYMEPFTLDV ISKRFVSASLTHR T KQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 122 DIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
           DIKAVLKSRSDIPACLAVG+ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 182 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Sed0013394 vs. ExPASy TrEMBL
Match: A0A0A0LLI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.5e-85
Identity = 165/187 (88.24%), Postives = 173/187 (92.51%), Query Frame = 0


Query: 2   LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAA-RSFFGVEDFLDDENSRPY 61
           ++KHFL NMRKHVVCA EVN  RPYL VPTS+FHKGEV  A RSFFG+EDFLDD+NSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 62  TYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSK 121
           TYQK K SKNPKKHISFK+RT+AYMEPFTLDV ISKRFVSASLTHR T KQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 122 DIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
           DIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 182 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Sed0013394 vs. ExPASy TrEMBL
Match: A0A6J1KIR9 (uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 9.6e-85
Identity = 163/187 (87.17%), Postives = 173/187 (92.51%), Query Frame = 0


Query: 2   LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPY 61
           ++KH L NMRKHVVC+ EVN  RPYLFVPTS+FHKGE   A RSFFGVEDF+DD+NSRPY
Sbjct: 1   MLKHLLGNMRKHVVCSCEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 62  TYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSK 121
           TYQKGK SKNPKKH+SFK+RTVAYMEPFTLDV ISKRFVSASLTHR T KQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 122 DIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
           DIKAVLKSRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 182 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Sed0013394 vs. ExPASy TrEMBL
Match: A0A1S3C286 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.3e-84
Identity = 165/187 (88.24%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVRAA-RSFFGVEDFLDDENSRPY 61
           ++KHFL NM KHVVCA EVN  RPYL VPTS+FHKGEV  A RSFFGVEDFLDD+NSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 62  TYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSK 121
           TYQK K SKNPKKHISFK+RT+AYMEPFTLDV ISKRFVSASLTHR T KQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 122 DIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
           DIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 182 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Sed0013394 vs. ExPASy TrEMBL
Match: A0A6J1G387 (uncharacterized protein LOC111450420 OS=Cucurbita moschata OX=3662 GN=LOC111450420 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 2.8e-84
Identity = 163/187 (87.17%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 2   LMKHFLANMRKHVVCAHEVNSIRPYLFVPTSEFHKGEVR-AARSFFGVEDFLDDENSRPY 61
           ++KH L NMRKH VCA EVN  RPYLFVPTS+FHKGE   A RSFFGVEDF+DD+NSRPY
Sbjct: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 62  TYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSK 121
           TYQKGK SKNPKKHISFK+RTVAYMEPFTLDV ISKRFVSASLTHR T KQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 122 DIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
           DIKAVL+SRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 182 DVKIYLE 188
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of Sed0013394 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 255.8 bits (652), Expect = 2.8e-68
Identity = 127/166 (76.51%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 23  IRPYLFVPTSEFHKGE-VRAARSFFGVEDFLDDENSRPYTYQKGKVSKNPKKHISFKKRT 82
           +RP++   +  FH G  V A RSFFGVED++DD+ SRPYTYQK K SKNP KH+SFK+RT
Sbjct: 24  LRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSRPYTYQKEKKSKNPDKHVSFKQRT 83

Query: 83  VAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSKDIKAVLKSRSDIPACLAVGAI 142
           VAYMEPFTLDV ISKRFVSASLTHR T +QVAVAGTNSKD+KAVL+SR DIPAC+++G I
Sbjct: 84  VAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRI 143

Query: 143 LAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 188
           L+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDNGIDVKIYL+
Sbjct: 144 LSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDVKIYLD 189

[Close]

BLAST of Sed0013394 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 255.4 bits (651), Expect = 3.6e-68
Identity = 130/190 (68.42%), Postives = 157/190 (82.63%), Query Frame = 0


Query: 1   MLMKHFLA--NMRKHVVCAHEVNSIRPYLFVPTSEFHKGE-VRAARSFFGVEDFLDDENS 60
           +++K  +A  ++ K  +       +RP++   +  FH G  V A RSFFGVED++DD+ S
Sbjct: 45  IMLKQVVAKYSIGKAAIYGSNREKLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTS 104

Query: 61  RPYTYQKGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGT 120
           RPYTYQK K SKNP KH+SFK+RTVAYMEPFTLDV ISKRFVSASLTHR T +QVAVAGT
Sbjct: 105 RPYTYQKEKKSKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGT 164

Query: 121 NSKDIKAVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLID 180
           NSKD+KAVL+SR DIPAC+++G IL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLID
Sbjct: 165 NSKDVKAVLRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLID 224

Query: 181 NGIDVKIYLE 188
           NGIDVKIYL+
Sbjct: 225 NGIDVKIYLD 234

[Close]

BLAST of Sed0013394 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 108.2 bits (269), Expect = 7.1e-24
Identity = 56/119 (47.06%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 69  KNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSKDIKAVLKS 128
           K  ++  +F + T  +  PF LD+ ISK  V A + HR T K V VA + SKD+K  L S
Sbjct: 179 KKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGS 238

Query: 129 RSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 188
           R ++ AC AVGA+LA+R+ E D++   YTPR+ DK EGK++ V+Q+LIDNG++VK+ L+
Sbjct: 239 RRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNVKVKLK 297

[Close]

BLAST of Sed0013394 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-21
Identity = 49/117 (41.88%), Postives = 79/117 (67.52%), Query Frame = 0


Query: 64  KGKVSKNPKKHISFKKRTVAYMEPFTLDVLISKRFVSASLTHRATFKQVAVAGTNSKDIK 123
           +G+ +K P +  S+K+RT  YM PF L+V  S++F+ A + HR T K ++VA TN++DI+
Sbjct: 68  RGEAAKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIR 127

Query: 124 AVLKSRSDIPACLAVGAILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
             + S  D  AC  +G ++AER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Sbjct: 128 TNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

The following BLAST results are available for this feature:

BLAST of Sed0013394 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150717.1	8.0e-86	89.30	uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncha...	[more]
XP_038890306.1	1.8e-85	89.30	50S ribosomal protein L18 [Benincasa hispida]	[more]
XP_004139203.1	5.2e-85	88.24	uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736382.1 uncharact...	[more]
XP_022999138.1	2.0e-84	87.17	uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharac...	[more]
XP_008455473.1	2.6e-84	88.24	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >XP_008455482.1 PREDICTED: 5...	[more]

BLAST of Sed0013394 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013394 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBH5	3.9e-86	89.30	uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A0A0LLI4	2.5e-85	88.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1	[more]
A0A6J1KIR9	9.6e-85	87.17	uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611...	[more]
A0A1S3C286	1.3e-84	88.24	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1	[more]
A0A6J1G387	2.8e-84	87.17	uncharacterized protein LOC111450420 OS=Cucurbita moschata OX=3662 GN=LOC1114504...	[more]

BLAST of Sed0013394 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08845.1	2.8e-68	76.51	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	3.6e-68	68.42	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	7.1e-24	47.06	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	1.5e-21	41.88	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 65..181 e-value: 4.2E-15 score: 58.2
None	No IPR available	PANTHER	PTHR12899:SF5	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 4..187
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 78..180 e-value: 5.18698E-18 score: 73.3431
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 72..180
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 67..181 e-value: 1.6E-7 score: 31.6
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 4..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013394.1	Sed0013394.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0019829	ATPase-coupled cation transmembrane transporter activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003735	structural constituent of ribosome