Sed0013340 (gene) Chayote v1

Overview


Name	Sed0013340
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG10: 34049760 .. 34050189 (+)
RNA-Seq Expression	Sed0013340
Synteny	Sed0013340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACACTTCAATTCATTTTCCATCTAATTACTTCTTCTCTGCCATGGGAGCCAACAACAGGCAAAAAAAGGCTCATTCTTCTTTCTCTATCTTTAGCTTCTTCAAATCGAGGAAGGGAAGGAAAGGAGATTGTTATGATCGGGACGAGGTGTCAAGCACGAGTAAGGTGTGGCCGAGCGATGGAGATAGAGGCTACCATTGGGTTGCCGAGCCTGGTATTGATAGAAAGGCCAAAGATTACATCGACAGGATCTATAGAAACCGTGTCTTTGAAACCGAGCGCCAAACAATCACTCTTCAACAGAATGGACCTAAATCTGATGTGTAAATCATTTATTTGTATATTTGATCTATTATTGTGATTTCATAGTTAGAATAAGTTGTTTCTGAGTGTTGGATCGTCAAATAATGTTACCAATCTTAACCTTTC

mRNA sequence

TCACACTTCAATTCATTTTCCATCTAATTACTTCTTCTCTGCCATGGGAGCCAACAACAGGCAAAAAAAGGCTCATTCTTCTTTCTCTATCTTTAGCTTCTTCAAATCGAGGAAGGGAAGGAAAGGAGATTGTTATGATCGGGACGAGGTGTCAAGCACGAGTAAGGTGTGGCCGAGCGATGGAGATAGAGGCTACCATTGGGTTGCCGAGCCTGGTATTGATAGAAAGGCCAAAGATTACATCGACAGGATCTATAGAAACCGTGTCTTTGAAACCGAGCGCCAAACAATCACTCTTCAACAGAATGGACCTAAATCTGATGTGTAAATCATTTATTTGTATATTTGATCTATTATTGTGATTTCATAGTTAGAATAAGTTGTTTCTGAGTGTTGGATCGTCAAATAATGTTACCAATCTTAACCTTTC

Coding sequence (CDS)

ATGGGAGCCAACAACAGGCAAAAAAAGGCTCATTCTTCTTTCTCTATCTTTAGCTTCTTCAAATCGAGGAAGGGAAGGAAAGGAGATTGTTATGATCGGGACGAGGTGTCAAGCACGAGTAAGGTGTGGCCGAGCGATGGAGATAGAGGCTACCATTGGGTTGCCGAGCCTGGTATTGATAGAAAGGCCAAAGATTACATCGACAGGATCTATAGAAACCGTGTCTTTGAAACCGAGCGCCAAACAATCACTCTTCAACAGAATGGACCTAAATCTGATGTGTAA

Protein sequence

MGANNRQKKAHSSFSIFSFFKSRKGRKGDCYDRDEVSSTSKVWPSDGDRGYHWVAEPGIDRKAKDYIDRIYRNRVFETERQTITLQQNGPKSDV

Homology

[Close]

BLAST of Sed0013340 vs. NCBI nr
Match: KGN45873.1 (hypothetical protein Csa_005148 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 5.2e-33
Identity = 71/98 (72.45%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFSFFKSRKGRKGDCYDR----DEVSSTSKVWPSDGDRGYHWVAE 60
          MG ++RQKK HSSFSIFSFFKS++GRKGD Y+     ++V S+SKVWPSD D+GY WVAE
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFETERQTITLQQNGPKSDV 95
          PGIDRKAKDYIDRIY+NRVFETERQT+T+  NGP S+V
Sbjct: 61 PGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of Sed0013340 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 7.5e-32
Identity = 72/99 (72.73%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFSFFKSRKGRKGDCYDR-----DEVSSTSKVWPSDGDRGYHWVA 60
          MG NNRQKK+HSSFSIFSFFKSR+GRKGD  +      DE+  + KVWPSD D+ +HWVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFETERQTITLQQNGPKSDV 95
          EPGIDRKAKDYIDRIYRNRVFE+ERQTIT+  NG KS+V
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of Sed0013340 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 1.7e-31
Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFSFFKSRKGRKGDCYDR-----DEVSSTSKVWPSDGDRGYHWVA 60
          MG NNRQKKAH+SFSIFSFFKSR+GRKGD  +      DE+  + KVWPSD D+ +HWVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFETERQTITLQQNGPKSDV 95
          EPGIDRKAKDYIDRIYRNRVFE+ERQT+T+  NG KS+V
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Sed0013340 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 4.8e-31
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 5  NRQKKAHSSFSIFSFFKSRKGRKGDCYDR-----DEVSSTSKVWPSDGDRGYHWVAEPGI 64
          NRQKK+HSSFSIFSFFKS++GRKGD YD      DE+  ++KVWPSD D+ +HW+AEPGI
Sbjct: 4  NRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGI 63

Query: 65 DRKAKDYIDRIYRNRVFETERQTITLQQNGPKSDV 95
          DRKAKDYIDRIYRNRVFE+ERQT+T+  NG KS+V
Sbjct: 64 DRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Sed0013340 vs. NCBI nr
Match: KAG6592313.1 (hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-28
Identity = 66/98 (67.35%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFSFFKSRKGRKGDCYDR----DEVSSTSKVWPSDGDRGYHWVAE 60
          MG NNR KK+HSSFSIF+FFK RKGRK D YD     +E+  + KVWPSD D+ + WVAE
Sbjct: 1  MGGNNRSKKSHSSFSIFNFFKFRKGRKEDHYDHGGYWNEMPRSGKVWPSDEDKTHRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFETERQTITLQQNGPKSDV 95
          PGIDRKAKDYID+IYRNR+FE+ERQT+TL  NG K D+
Sbjct: 61 PGIDRKAKDYIDKIYRNRIFESERQTVTLPANGTKLDL 98

[Close]

BLAST of Sed0013340 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.5e-33
Identity = 71/98 (72.45%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFSFFKSRKGRKGDCYDR----DEVSSTSKVWPSDGDRGYHWVAE 60
          MG ++RQKK HSSFSIFSFFKS++GRKGD Y+     ++V S+SKVWPSD D+GY WVAE
Sbjct: 1  MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAE 60

Query: 61 PGIDRKAKDYIDRIYRNRVFETERQTITLQQNGPKSDV 95
          PGIDRKAKDYIDRIY+NRVFETERQT+T+  NGP S+V
Sbjct: 61 PGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

[Close]

BLAST of Sed0013340 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.6e-32
Identity = 72/99 (72.73%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFSFFKSRKGRKGDCYDR-----DEVSSTSKVWPSDGDRGYHWVA 60
          MG NNRQKK+HSSFSIFSFFKSR+GRKGD  +      DE+  + KVWPSD D+ +HWVA
Sbjct: 1  MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFETERQTITLQQNGPKSDV 95
          EPGIDRKAKDYIDRIYRNRVFE+ERQTIT+  NG KS+V
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

[Close]

BLAST of Sed0013340 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.1e-32
Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 0


Query: 1  MGANNRQKKAHSSFSIFSFFKSRKGRKGDCYDR-----DEVSSTSKVWPSDGDRGYHWVA 60
          MG NNRQKKAH+SFSIFSFFKSR+GRKGD  +      DE+  + KVWPSD D+ +HWVA
Sbjct: 1  MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFETERQTITLQQNGPKSDV 95
          EPGIDRKAKDYIDRIYRNRVFE+ERQT+T+  NG KS+V
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

[Close]

BLAST of Sed0013340 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.1e-32
Identity = 70/95 (73.68%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 5  NRQKKAHSSFSIFSFFKSRKGRKGDCYDR-----DEVSSTSKVWPSDGDRGYHWVAEPGI 64
          NRQKK+HSSFSIFSFFKSR+GRKGD YD      DE+  ++KVWPSD D+ +HWVAEPGI
Sbjct: 4  NRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEPGI 63

Query: 65 DRKAKDYIDRIYRNRVFETERQTITLQQNGPKSDV 95
          DRKAKDYIDRIYRNRVFE+ERQT+T+  NG KS+V
Sbjct: 64 DRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Sed0013340 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.3e-31
Identity = 68/95 (71.58%), Postives = 81/95 (85.26%), Query Frame = 0


Query: 5  NRQKKAHSSFSIFSFFKSRKGRKGDCYDR-----DEVSSTSKVWPSDGDRGYHWVAEPGI 64
          NRQKK+HSSFSIFSFFKS++GRKGD YD      DE+  ++KVWPSD D+ +HW+AEPGI
Sbjct: 4  NRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEPGI 63

Query: 65 DRKAKDYIDRIYRNRVFETERQTITLQQNGPKSDV 95
          DRKAKDYIDRIYRNRVFE+ERQT+T+  NG KS+V
Sbjct: 64 DRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

[Close]

BLAST of Sed0013340 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 9.2e-12
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MGANNRQKKAHSS--FSIFSFFKSRKGRKGDCYDR-DEVSSTSKVWPSDGDRGYHWVAEP 60
          MG  NR   +HSS  FS+FSFFK+R+  + +     D+   T K   SD D+ Y WVAEP
Sbjct: 1  MGGKNR---SHSSKRFSLFSFFKTRRSHRVEADGSWDDFGYTRKAMASDEDKRY-WVAEP 60

Query: 61 GIDRKAKDYIDRIYRNRVFETERQTIT 85
          GIDRKA  +I + +  RV E+ERQT++
Sbjct: 61 GIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Sed0013340 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 4.3e-09
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 34 DEVSSTSKVWPSDGDRGYHWVAEPGIDRKAKDYIDRIYRNRVFETERQTI 84
          D+V  T K W SD D+ Y WVAEPGIDRKA  +I + + +RV E+ERQT+
Sbjct: 18 DDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQTL 66

The following BLAST results are available for this feature:

BLAST of Sed0013340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45873.1	5.2e-33	72.45	hypothetical protein Csa_005148 [Cucumis sativus]	[more]
KAA0035003.1	7.5e-32	72.73	hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343...	[more]
KGN45869.1	1.7e-31	71.72	hypothetical protein Csa_005516 [Cucumis sativus]	[more]
KGN45870.1	4.8e-31	71.58	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAG6592313.1	1.0e-28	67.35	hypothetical protein SDJN03_14659, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0013340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8W0	2.5e-33	72.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]
A0A5A7SWT9	3.6e-32	72.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAK6	8.1e-32	71.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A0A0KBW1	8.1e-32	73.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K7Y2	2.3e-31	71.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]

BLAST of Sed0013340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	9.2e-12	47.13	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	4.3e-09	56.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013340.1	Sed0013340.1	mRNA