Sed0013275 (gene) Chayote v1

Overview


Name	Sed0013275
Type	gene
Organism	Sechium edule (Chayote v1)
Description	auxin-responsive protein SAUR21-like
Location	LG01: 1839242 .. 1839706 (+)
RNA-Seq Expression	Sed0013275
Synteny	Sed0013275

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATTCAGTGTTCTCATCCTCAAATTAAATACAGACATGGGAATCAGACTACTTTCACTTCTTCTTAATGCTAAACAGATTGTAAAAATGCAGACTGTTTCTTCAAGAAGCCAGTGTGGTGTCCCCAAGGGTCATATTGCAGTCTATGTCGGAGAGACCGAAAGGAAGCGGTTTGTAGTTCCGGTATCATACTTGAATCACCCTTCTTTTGCAGCTCTGCTAAAGAGAGCTGAAGAAGAATTTGGATTTAAACATCCAACAGGAGGACTGACAATTCCTTGCGGAGAAGATGCCTTTATCAACATTACTTCTAGGCTGCATACTTCTTGAAAAAAAAGAGGAAAAACAATCCTTCACACTGTTTTGCAGAATTCTTCTCAATTTTTTTTTTCTTTTTTCCAAAGTTGAGGAGTAGAATACCAATGCATAGTTAGTTTCTCTAAGAACAAGAAGAAAAACTTGAT

mRNA sequence

TTCATTCAGTGTTCTCATCCTCAAATTAAATACAGACATGGGAATCAGACTACTTTCACTTCTTCTTAATGCTAAACAGATTGTAAAAATGCAGACTGTTTCTTCAAGAAGCCAGTGTGGTGTCCCCAAGGGTCATATTGCAGTCTATGTCGGAGAGACCGAAAGGAAGCGGTTTGTAGTTCCGGTATCATACTTGAATCACCCTTCTTTTGCAGCTCTGCTAAAGAGAGCTGAAGAAGAATTTGGATTTAAACATCCAACAGGAGGACTGACAATTCCTTGCGGAGAAGATGCCTTTATCAACATTACTTCTAGGCTGCATACTTCTTGAAAAAAAAGAGGAAAAACAATCCTTCACACTGTTTTGCAGAATTCTTCTCAATTTTTTTTTTCTTTTTTCCAAAGTTGAGGAGTAGAATACCAATGCATAGTTAGTTTCTCTAAGAACAAGAAGAAAAACTTGAT

Coding sequence (CDS)

ATGGGAATCAGACTACTTTCACTTCTTCTTAATGCTAAACAGATTGTAAAAATGCAGACTGTTTCTTCAAGAAGCCAGTGTGGTGTCCCCAAGGGTCATATTGCAGTCTATGTCGGAGAGACCGAAAGGAAGCGGTTTGTAGTTCCGGTATCATACTTGAATCACCCTTCTTTTGCAGCTCTGCTAAAGAGAGCTGAAGAAGAATTTGGATTTAAACATCCAACAGGAGGACTGACAATTCCTTGCGGAGAAGATGCCTTTATCAACATTACTTCTAGGCTGCATACTTCTTGA

Protein sequence

MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAALLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHTS

Homology

[Close]

BLAST of Sed0013275 vs. NCBI nr
Match: KAG6605014.1 (Auxin-responsive protein SAUR23, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.9 bits (468), Expect = 3.3e-43
Identity = 89/96 (92.71%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAA 60
          MGIRL SLLLNAKQIV+MQTVSSRSQCGVPKGHIAVYVGETERKRFVVP+SYLNHPSFAA
Sbjct: 1  MGIRLPSLLLNAKQIVRMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPISYLNHPSFAA 60

Query: 61 LLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHT 97
          LLK AEEEFGFKHPTGGLTIPC EDAF+N+TSRLHT
Sbjct: 61 LLKTAEEEFGFKHPTGGLTIPCREDAFLNLTSRLHT 96

[Close]

BLAST of Sed0013275 vs. NCBI nr
Match: XP_023007087.1 (auxin-responsive protein SAUR21-like [Cucurbita maxima])

HSP 1 Score: 180.6 bits (457), Expect = 6.3e-42
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAA 60
          MGIRL SLLLNAKQ+V+MQTVSSRSQCGVPKGHIAVYVGE ERKRFVVP+SYLNHPSF A
Sbjct: 1  MGIRLPSLLLNAKQVVRMQTVSSRSQCGVPKGHIAVYVGEIERKRFVVPISYLNHPSFVA 60

Query: 61 LLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHT 97
          LLK AEEEFGFKHPTGGLTIPC EDAF+N+TSRLHT
Sbjct: 61 LLKTAEEEFGFKHPTGGLTIPCREDAFLNLTSRLHT 96

[Close]

BLAST of Sed0013275 vs. NCBI nr
Match: XP_022146165.1 (auxin-responsive protein SAUR21-like [Momordica charantia] >XP_022146166.1 auxin-responsive protein SAUR21-like [Momordica charantia] >XP_022146167.1 auxin-responsive protein SAUR21-like [Momordica charantia])

HSP 1 Score: 180.6 bits (457), Expect = 6.3e-42
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 1  MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAA 60
          MGIRL SLLLNAKQIV+MQT SSR+QCGVPKGHIAVYVGE ERKRFVVP+SYLNHPSF A
Sbjct: 1  MGIRLPSLLLNAKQIVRMQTASSRNQCGVPKGHIAVYVGEIERKRFVVPISYLNHPSFVA 60

Query: 61 LLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHTS 98
          LLK AEEEFGFKHPTGGLTIPC EDAFIN+TSRLHTS
Sbjct: 61 LLKSAEEEFGFKHPTGGLTIPCREDAFINLTSRLHTS 97

[Close]

BLAST of Sed0013275 vs. NCBI nr
Match: KAG6571049.1 (Auxin-responsive protein SAUR20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.3 bits (456), Expect = 8.2e-42
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1  MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAA 60
          MGIRL SLLLNAKQIVKMQTVSSR+QCGVPKGHIAVYVG+TERKRFVVP+SYLNHPSF+A
Sbjct: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDTERKRFVVPISYLNHPSFSA 60

Query: 61 LLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHTS 98
          LLK AEEEFGFKHPTGGLTIPC ED FIN+TSRL TS
Sbjct: 61 LLKTAEEEFGFKHPTGGLTIPCREDVFINLTSRLQTS 97

[Close]

BLAST of Sed0013275 vs. NCBI nr
Match: XP_022944352.1 (auxin-responsive protein SAUR21-like [Cucurbita moschata])

HSP 1 Score: 180.3 bits (456), Expect = 8.2e-42
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1   MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAA 60
           MGIRL SLLLNAKQIVKMQTVSSR+QCGVPKGHIAVYVG+TERKRFVVP+SYLNHPSF+A
Sbjct: 40  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDTERKRFVVPISYLNHPSFSA 99

Query: 61  LLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHTS 98
           LLK AEEEFGFKHPTGGLTIPC ED FIN+TSRL TS
Sbjct: 100 LLKTAEEEFGFKHPTGGLTIPCREDVFINLTSRLQTS 136

[Close]

BLAST of Sed0013275 vs. ExPASy Swiss-Prot
Match: Q9FK62 (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.3e-25
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 9  LLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAALLKRAEEE 68
          LL AK+I+   T +  +    PKG +AVYVGE+++KR++VPVSYLN PSF ALL ++EEE
Sbjct: 7  LLGAKKILSRSTGAGSA---APKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEE 66

Query: 69 FGFKHPTGGLTIPCGEDAFINITSRL 95
          FGF HP GGLTIPC ED FIN+TSRL
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRL 89

[Close]

BLAST of Sed0013275 vs. ExPASy Swiss-Prot
Match: Q9FJF6 (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.5e-25
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 5  LLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAALLKR 64
          L+  LL AK+I+     S+ +    PKG +AVYVGE+++KR++VP+SYLN PSF ALL +
Sbjct: 3  LVRSLLVAKKILSR---SAAAVSAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSK 62

Query: 65 AEEEFGFKHPTGGLTIPCGEDAFINITSRLH 96
          +EEEFGF HP GGLTIPC ED FIN+TSRLH
Sbjct: 63 SEEEFGFDHPMGGLTIPCPEDTFINVTSRLH 90

[Close]

BLAST of Sed0013275 vs. ExPASy Swiss-Prot
Match: Q9FJG0 (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-24
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 9  LLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAALLKRAEEE 68
          LL AK+I+   T ++ +    PKG +AVYVGE+++KR++VP+SYLN PSF ALL ++EEE
Sbjct: 7  LLGAKKILSRSTTAASA---APKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEE 66

Query: 69 FGFKHPTGGLTIPCGEDAFINITSR 94
          FGF HP GGLTIPC ED FIN+TSR
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSR 88

[Close]

BLAST of Sed0013275 vs. ExPASy Swiss-Prot
Match: Q9FJF9 (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-24
Identity = 54/90 (60.00%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 5  LLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAALLKR 64
          L+  LL AK+I+   T S+      PKG +AVYVGE+++KR++VP+SYL+ PSF ALL +
Sbjct: 3  LVRSLLGAKKILSRSTASA-----APKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSK 62

Query: 65 AEEEFGFKHPTGGLTIPCGEDAFINITSRL 95
          +EEEFGF HP GGLTIPC ED FIN+TSRL
Sbjct: 63 SEEEFGFDHPMGGLTIPCPEDTFINVTSRL 87

[Close]

BLAST of Sed0013275 vs. ExPASy Swiss-Prot
Match: Q9FJG1 (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-24
Identity = 52/86 (60.47%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 9  LLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAALLKRAEEE 68
          LL AK+I+   T +  +    PKG +AVYVGE+++KR++VP+SYL+ PSF ALL ++EEE
Sbjct: 7  LLGAKKILSRSTAAGSA---APKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEE 66

Query: 69 FGFKHPTGGLTIPCGEDAFINITSRL 95
          FGF HP GGLTIPC ED FIN+TSRL
Sbjct: 67 FGFAHPMGGLTIPCPEDTFINVTSRL 89

[Close]

BLAST of Sed0013275 vs. ExPASy TrEMBL
Match: A0A6J1CWI4 (auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015447 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 1  MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAA 60
          MGIRL SLLLNAKQIV+MQT SSR+QCGVPKGHIAVYVGE ERKRFVVP+SYLNHPSF A
Sbjct: 1  MGIRLPSLLLNAKQIVRMQTASSRNQCGVPKGHIAVYVGEIERKRFVVPISYLNHPSFVA 60

Query: 61 LLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHTS 98
          LLK AEEEFGFKHPTGGLTIPC EDAFIN+TSRLHTS
Sbjct: 61 LLKSAEEEFGFKHPTGGLTIPCREDAFINLTSRLHTS 97

[Close]

BLAST of Sed0013275 vs. ExPASy TrEMBL
Match: A0A6J1KXM0 (auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111499682 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.0e-42
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAA 60
          MGIRL SLLLNAKQ+V+MQTVSSRSQCGVPKGHIAVYVGE ERKRFVVP+SYLNHPSF A
Sbjct: 1  MGIRLPSLLLNAKQVVRMQTVSSRSQCGVPKGHIAVYVGEIERKRFVVPISYLNHPSFVA 60

Query: 61 LLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHT 97
          LLK AEEEFGFKHPTGGLTIPC EDAF+N+TSRLHT
Sbjct: 61 LLKTAEEEFGFKHPTGGLTIPCREDAFLNLTSRLHT 96

[Close]

BLAST of Sed0013275 vs. ExPASy TrEMBL
Match: A0A6J1FVH4 (auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC111448819 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.0e-42
Identity = 87/97 (89.69%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1   MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAA 60
           MGIRL SLLLNAKQIVKMQTVSSR+QCGVPKGHIAVYVG+TERKRFVVP+SYLNHPSF+A
Sbjct: 40  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDTERKRFVVPISYLNHPSFSA 99

Query: 61  LLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHTS 98
           LLK AEEEFGFKHPTGGLTIPC ED FIN+TSRL TS
Sbjct: 100 LLKTAEEEFGFKHPTGGLTIPCREDVFINLTSRLQTS 136

[Close]

BLAST of Sed0013275 vs. ExPASy TrEMBL
Match: A0A6J1JGW3 (auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111484395 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 9.8e-41
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAA 60
          MGIRL SLLLNAKQ+VKMQTV SR+QCGVPKGHIAVYVG+ ERKRFVVP+SYLNHPSF+A
Sbjct: 1  MGIRLPSLLLNAKQVVKMQTVPSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60

Query: 61 LLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHTS 98
          LLK AEEEFGFKHPTGGLTIPC ED FIN+TSRL TS
Sbjct: 61 LLKTAEEEFGFKHPTGGLTIPCREDVFINLTSRLQTS 97

[Close]

BLAST of Sed0013275 vs. ExPASy TrEMBL
Match: A0A6J1FVI6 (auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC111448837 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 1  MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAA 60
          MGIRL SLLLNAKQIVKMQTVSSR+QCGVPKGHIAVYVG+ ERKRFVVP+SYLNHPSF+A
Sbjct: 1  MGIRLPSLLLNAKQIVKMQTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSA 60

Query: 61 LLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHTS 98
          LLK AEEEFGFKHPTGGLTIPC E+ FIN+TS L TS
Sbjct: 61 LLKTAEEEFGFKHPTGGLTIPCREEVFINLTSSLQTS 97

[Close]

BLAST of Sed0013275 vs. TAIR 10
Match: AT5G18080.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 114.4 bits (285), Expect = 5.2e-26
Identity = 54/86 (62.79%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 9  LLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAALLKRAEEE 68
          LL AK+I+   T +  +    PKG +AVYVGE+++KR++VPVSYLN PSF ALL ++EEE
Sbjct: 7  LLGAKKILSRSTGAGSA---APKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEE 66

Query: 69 FGFKHPTGGLTIPCGEDAFINITSRL 95
          FGF HP GGLTIPC ED FIN+TSRL
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRL 89

[Close]

BLAST of Sed0013275 vs. TAIR 10
Match: AT2G21210.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 114.0 bits (284), Expect = 6.7e-26
Identity = 56/98 (57.14%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 1  MGIRLLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGE-TERKRFVVPVSYLNHPSFA 60
          M IR+  +L ++KQ++K  + SS +   +PKGH+AVYVGE  +++RFVVPV+YL+HP F 
Sbjct: 1  MAIRISRVLQSSKQLLKSLSHSS-NNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQ 60

Query: 61 ALLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLHTS 98
           LL++AEEEFGF HP GGLTIPC E  FI++ SRL TS
Sbjct: 61 KLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRLSTS 97

[Close]

BLAST of Sed0013275 vs. TAIR 10
Match: AT5G18060.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 114.0 bits (284), Expect = 6.7e-26
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = 0


Query: 5  LLSLLLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAALLKR 64
          L+  LL AK+I+     S+ +    PKG +AVYVGE+++KR++VP+SYLN PSF ALL +
Sbjct: 3  LVRSLLVAKKILSR---SAAAVSAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSK 62

Query: 65 AEEEFGFKHPTGGLTIPCGEDAFINITSRLH 96
          +EEEFGF HP GGLTIPC ED FIN+TSRLH
Sbjct: 63 SEEEFGFDHPMGGLTIPCPEDTFINVTSRLH 90

[Close]

BLAST of Sed0013275 vs. TAIR 10
Match: AT4G38840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 113.6 bits (283), Expect = 8.8e-26
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 1  MGIRLLSLLLNAKQIVK----MQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHP 60
          M IR+  +L ++KQI++    + + SS S   VPKG++AVYVGE   KRFVVPVSYL+ P
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 61 SFAALLKRAEEEFGFKHPTGGLTIPCGEDAFINITSRLH 96
          SF  LL++AEEEFGF HP GGLTIPC E+ FI++ SR +
Sbjct: 61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASRFN 99

[Close]

BLAST of Sed0013275 vs. TAIR 10
Match: AT5G18020.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 113.6 bits (283), Expect = 8.8e-26
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 9  LLNAKQIVKMQTVSSRSQCGVPKGHIAVYVGETERKRFVVPVSYLNHPSFAALLKRAEEE 68
          LL AK+I+   T ++ +    PKG +AVYVGE+++KR++VP+SYLN PSF ALL ++EEE
Sbjct: 7  LLGAKKILSRSTTAASA---APKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEE 66

Query: 69 FGFKHPTGGLTIPCGEDAFINITSR 94
          FGF HP GGLTIPC ED FIN+TSR
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSR 88

The following BLAST results are available for this feature:

BLAST of Sed0013275 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6605014.1	3.3e-43	92.71	Auxin-responsive protein SAUR23, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023007087.1	6.3e-42	89.58	auxin-responsive protein SAUR21-like [Cucurbita maxima]	[more]
XP_022146165.1	6.3e-42	89.69	auxin-responsive protein SAUR21-like [Momordica charantia] >XP_022146166.1 auxin...	[more]
KAG6571049.1	8.2e-42	89.69	Auxin-responsive protein SAUR20, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022944352.1	8.2e-42	89.69	auxin-responsive protein SAUR21-like [Cucurbita moschata]	[more]

BLAST of Sed0013275 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FK62	7.3e-25	62.79	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 S...	[more]
Q9FJF6	9.5e-25	60.44	Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 S...	[more]
Q9FJG0	1.2e-24	61.18	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=1 S...	[more]
Q9FJF9	2.1e-24	60.00	Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 S...	[more]
Q9FJG1	2.8e-24	60.47	Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 S...	[more]

BLAST of Sed0013275 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWI4	3.0e-42	89.69	auxin-responsive protein SAUR21-like OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A6J1KXM0	3.0e-42	89.58	auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111499682...	[more]
A0A6J1FVH4	4.0e-42	89.69	auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]
A0A6J1JGW3	9.8e-41	86.60	auxin-responsive protein SAUR21-like OS=Cucurbita maxima OX=3661 GN=LOC111484395...	[more]
A0A6J1FVI6	2.9e-40	86.60	auxin-responsive protein SAUR21-like OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]

BLAST of Sed0013275 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18080.1	5.2e-26	62.79	SAUR-like auxin-responsive protein family	[more]
AT2G21210.1	6.7e-26	57.14	SAUR-like auxin-responsive protein family	[more]
AT5G18060.1	6.7e-26	60.44	SAUR-like auxin-responsive protein family	[more]
AT4G38840.1	8.8e-26	56.57	SAUR-like auxin-responsive protein family	[more]
AT5G18020.1	8.8e-26	61.18	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 12..93 e-value: 2.5E-26 score: 91.7
None	No IPR available	PANTHER	PTHR31929	SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED	coord: 1..96
None	No IPR available	PANTHER	PTHR31929:SF51	AUXIN-RESPONSIVE PROTEIN SAUR22-LIKE	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013275.1	Sed0013275.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin