Sed0013262 (gene) Chayote v1

Overview


Name	Sed0013262
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ENDO3c domain-containing protein
Location	LG08: 38052481 .. 38054691 (-)
RNA-Seq Expression	Sed0013262
Synteny	Sed0013262

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATTATGAAGAAGACGACGATGACGACCTGCAAAAAGAGGCGTTTTCAAAAACCAGAGCCATTGGCCGATTCTCACTCAAATGGAGCTCGATCAAAGTCAATCAAAACCGTCAATGGCTTCAATTGCTCAACCACTGAACCTTATCCGGCTCATTGTTCTCCAACTTCCGACCAATGTTTGTCCGTACGCGACGATCTGTTTAATCTCCATGGTTTTCCACGAGAGTTTGTGAAGTATCGGAAGGAACGGGAGAAGTGCTGCTCCGCCGTGGACGGCGGTGAGCTGGTGGAAAATGCGAAGTCGGAGACCGTCGATGAGAAGGAGAGCGTTTTGGATGGGTTGGTGAGGACTGTGTTATCGCAGAACACGACGGAGGTTAATTCTGAGAGGGCTTTTGCTTCTCTCAAGTCTGCTTTTGCTACCTGGGAACATGTGAGTCTTTTGATTGGATTTTGGCTGTTTTTTATATGCTGGAAGAAAATGTTCTTGATTTTGATTATATTATTGATGAACTAGGTTTAGGGAATTGAAACTGGATGCTCTTATGTATTACTTTTTGCTTTCTAAGTTACGTGGATTGTGAATTTTATCTTTTGAAAAATTTGTGGAAGGCTTGAGTTCCCTCAAGGTCTCTCAGGTAGGTTCGAGACTCAACTCTGACATTAGACATGGGCTAGGGGCGGTTTGCATCTGGGTATAACGATATTTCAGTTTCGAAAAAAAAATGAGGTCAGTTTGAAGATGGACAAATCATTGAAAGGAGGTTTGTCATGATGCAGAAACAAGTTGGTATCTCATATTTGAAGTGTTGTTAGACCATCAGTTTAGTAGTTTTTGCTGTTTATCTGTGTCTGTTCTGATCTTGATCATATCTATGTTATGATCATATCAAAGTCTTCTTTATAGTAAATCTTACATATAGTTGAAGGGTAAAATTGATATCCAAAATTGAATTATGGGCAATGAAATTGGAGACTTGGAGTTTATATGACAGGAAACCTCAAGTGATCTTTTTTTGCTGAAATGTTGAAGTTTGCCTTTTGATTTATGTACCCATATATTTTGTAGGTTCTTTCAGCTGAATCCAAATGCCTGGAGGATGCCATAAGATGTGGAGGATTGGCACCTACAAAAGCTTCTTGCATTAAAAACATATTGAGTTCTTTGTCAAAGAGAAGAAGCAAATTATGCCTGGAGTACTTACACAATTTATCCATTGATGAAATAAAGGCAGAGTTGTCCACTTTCAAAGGAATCGGTCCTAAAACGGTATTGTTTCTAAGTAAACGAAAAGGCCTCTCTCCCGGGTCTAGGCCTTGGGACTGCCGCGAGTGCCCCCCGAATATGTAGGGGGCAAAGTTTTGATTCTCGATTATTAGAAAAATGAAAAAGAAAAGAATGAATACGAAAACAAGCCTGCATACTTCATTTAATTGCTTACCCAACAGCTATATTTATTGGGATCCTGGTTGAAGGCTTCTACCGAAAGATCTTTATTCTTATCACATCTGTTGTGTCTATCTATAGCTTTCATTTTTCATAAAATTCTTCAATGTTAAGGCACCATAGATTATAAAATAGATTGCGTCGGTTTGTATTTTGAATGTCAAGTGGTATGAATGAGTTGATTGAACCATAGAAGTTATAATTGACAGGTGGCCTGTGTCTTGATGTTCAATCTTCAGAAAGATGATTTTCCAGTAGACACCCATGTGAGTAATTTCCAGAATTGCAAATGGATCCTTATTTCTGATGAGTTTGTGATTTTTTTTCCTCGAACCCATTGGGAGATTTTGATTCTCCAATATGTTTGCAGGTCTTTGAGATTGCAAAGTTCATCGGTTGGGTCCCGAATGAGGCGGACAGGAACAAAACATATCTTCATCTCAACCAAAGGATCCCAAATCATCTCAAATTTGATCTCAACTGTCTTCTTTACACTCATGGCAAGCTTTGTTCGAAATGTACGAAGAAAACAGGCGCCCGGCAGCGAAAGGGATCTGAAGATCAATCTTGTCCCTTGTTGAAGTACTCCAAGATCCCTTGAATTTGTAATTTAAATGTTTTTACAAGAGTTTATATGAAAAGCCTCTAATCCTTTTTATTTTGTCCCCACAAATGTAGAAATTGCTATGCTACAATGTCTACATTCTGGAATGCTGTTTCTGTAAGTAAAATTATGCTGTTCCAAAAATATTTAAGAGTGGAG

mRNA sequence

GCATTATGAAGAAGACGACGATGACGACCTGCAAAAAGAGGCGTTTTCAAAAACCAGAGCCATTGGCCGATTCTCACTCAAATGGAGCTCGATCAAAGTCAATCAAAACCGTCAATGGCTTCAATTGCTCAACCACTGAACCTTATCCGGCTCATTGTTCTCCAACTTCCGACCAATGTTTGTCCGTACGCGACGATCTGTTTAATCTCCATGGTTTTCCACGAGAGTTTGTGAAGTATCGGAAGGAACGGGAGAAGTGCTGCTCCGCCGTGGACGGCGGTGAGCTGGTGGAAAATGCGAAGTCGGAGACCGTCGATGAGAAGGAGAGCGTTTTGGATGGGTTGGTGAGGACTGTGTTATCGCAGAACACGACGGAGGTTAATTCTGAGAGGGCTTTTGCTTCTCTCAAGTCTGCTTTTGCTACCTGGGAACATGTTCTTTCAGCTGAATCCAAATGCCTGGAGGATGCCATAAGATGTGGAGGATTGGCACCTACAAAAGCTTCTTGCATTAAAAACATATTGAGTTCTTTGTCAAAGAGAAGAAGCAAATTATGCCTGGAGTACTTACACAATTTATCCATTGATGAAATAAAGGCAGAGTTGTCCACTTTCAAAGGAATCGGTCCTAAAACGGTGGCCTGTGTCTTGATGTTCAATCTTCAGAAAGATGATTTTCCAGTAGACACCCATGTCTTTGAGATTGCAAAGTTCATCGGTTGGGTCCCGAATGAGGCGGACAGGAACAAAACATATCTTCATCTCAACCAAAGGATCCCAAATCATCTCAAATTTGATCTCAACTGTCTTCTTTACACTCATGGCAAGCTTTGTTCGAAATGTACGAAGAAAACAGGCGCCCGGCAGCGAAAGGGATCTGAAGATCAATCTTGTCCCTTGTTGAAGTACTCCAAGATCCCTTGAATTTGTAATTTAAATGTTTTTACAAGAGTTTATATGAAAAGCCTCTAATCCTTTTTATTTTGTCCCCACAAATGTAGAAATTGCTATGCTACAATGTCTACATTCTGGAATGCTGTTTCTGTAAGTAAAATTATGCTGTTCCAAAAATATTTAAGAGTGGAG

Coding sequence (CDS)

ATGAAGAAGACGACGATGACGACCTGCAAAAAGAGGCGTTTTCAAAAACCAGAGCCATTGGCCGATTCTCACTCAAATGGAGCTCGATCAAAGTCAATCAAAACCGTCAATGGCTTCAATTGCTCAACCACTGAACCTTATCCGGCTCATTGTTCTCCAACTTCCGACCAATGTTTGTCCGTACGCGACGATCTGTTTAATCTCCATGGTTTTCCACGAGAGTTTGTGAAGTATCGGAAGGAACGGGAGAAGTGCTGCTCCGCCGTGGACGGCGGTGAGCTGGTGGAAAATGCGAAGTCGGAGACCGTCGATGAGAAGGAGAGCGTTTTGGATGGGTTGGTGAGGACTGTGTTATCGCAGAACACGACGGAGGTTAATTCTGAGAGGGCTTTTGCTTCTCTCAAGTCTGCTTTTGCTACCTGGGAACATGTTCTTTCAGCTGAATCCAAATGCCTGGAGGATGCCATAAGATGTGGAGGATTGGCACCTACAAAAGCTTCTTGCATTAAAAACATATTGAGTTCTTTGTCAAAGAGAAGAAGCAAATTATGCCTGGAGTACTTACACAATTTATCCATTGATGAAATAAAGGCAGAGTTGTCCACTTTCAAAGGAATCGGTCCTAAAACGGTGGCCTGTGTCTTGATGTTCAATCTTCAGAAAGATGATTTTCCAGTAGACACCCATGTCTTTGAGATTGCAAAGTTCATCGGTTGGGTCCCGAATGAGGCGGACAGGAACAAAACATATCTTCATCTCAACCAAAGGATCCCAAATCATCTCAAATTTGATCTCAACTGTCTTCTTTACACTCATGGCAAGCTTTGTTCGAAATGTACGAAGAAAACAGGCGCCCGGCAGCGAAAGGGATCTGAAGATCAATCTTGTCCCTTGTTGAAGTACTCCAAGATCCCTTGA

Protein sequence

MKKTTMTTCKKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLSVRDDLFNLHGFPREFVKYRKEREKCCSAVDGGELVENAKSETVDEKESVLDGLVRTVLSQNTTEVNSERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSSLSKRRSKLCLEYLHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKFIGWVPNEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRKGSEDQSCPLLKYSKIP

Homology

[Close]

BLAST of Sed0013262 vs. NCBI nr
Match: XP_022994647.1 (putative DNA glycosylase At3g47830 [Cucurbita maxima])

HSP 1 Score: 520.4 bits (1339), Expect = 1.1e-143
Identity = 265/309 (85.76%), Postives = 278/309 (89.97%), Query Frame = 0


Query: 1   MKKTTMTTCKKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLS 60
           MKK   TTCKKRR QKPEP  DSHSNG R+KSI+TVNGF+CST EPYPA+ SPTSD+CLS
Sbjct: 1   MKK---TTCKKRRLQKPEPDGDSHSNGPRAKSIRTVNGFDCSTNEPYPAYSSPTSDECLS 60

Query: 61  VRDDLFNLHGFPREFVKYRKEREK---CCSAVD--GGELVENAKSETVDEKESVLDGLVR 120
           VRDDL NLHGFPREFV YRKERE+   CCS VD  GGEL EN KS      ESVLDGLVR
Sbjct: 61  VRDDLLNLHGFPREFVIYRKERERLSECCSVVDGSGGELAENVKS------ESVLDGLVR 120

Query: 121 TVLSQNTTEVNSERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSS 180
           TVLSQNTTE NSE+AFASLKSAFATWE VLSAESKC+EDAIRCGGLAPTKASCIKNILSS
Sbjct: 121 TVLSQNTTEANSEKAFASLKSAFATWEDVLSAESKCIEDAIRCGGLAPTKASCIKNILSS 180

Query: 181 LSKRRSKLCLEYLHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240
           LSKRR KLCLEYLHNLSIDE+KAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK
Sbjct: 181 LSKRRGKLCLEYLHNLSIDEVKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240

Query: 241 FIGWVPNEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKT-GARQRKGSEDQ 300
           FIGWVP+EADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKC+K+T G RQRK SE+Q
Sbjct: 241 FIGWVPDEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCSKRTGGGRQRKVSENQ 300

Query: 301 SCPLLKYSK 304
           SCPLLKYSK
Sbjct: 301 SCPLLKYSK 300

[Close]

BLAST of Sed0013262 vs. NCBI nr
Match: XP_008438070.1 (PREDICTED: putative DNA glycosylase At3g47830 [Cucumis melo] >TYJ99137.1 putative DNA glycosylase [Cucumis melo var. makuwa])

HSP 1 Score: 518.1 bits (1333), Expect = 5.2e-143
Identity = 259/310 (83.55%), Postives = 279/310 (90.00%), Query Frame = 0


Query: 1   MKKTTMTTCKKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLS 60
           MKK   TT KKRR QKPEP ADSHS+  R+KSI+TVNGFNCSTTEPYPAH SPTSD+CLS
Sbjct: 1   MKK---TTGKKRRLQKPEPPADSHSDRPRAKSIRTVNGFNCSTTEPYPAHSSPTSDECLS 60

Query: 61  VRDDLFNLHGFPREFVKYRKEREK---CCSAVDG--GELVENAKSETVDEKESVLDGLVR 120
           VRDDL NLHGFPREF+KYRKERE+   CCS VDG   E  +N +SE V EKESVLDGLV+
Sbjct: 61  VRDDLLNLHGFPREFLKYRKERERLSECCSFVDGVRAEHGDNVESELVVEKESVLDGLVK 120

Query: 121 TVLSQNTTEVNSERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSS 180
           TVLSQNTTE NSERAF SLKSAF+TWE VLSAESKC+EDAIRCGGLAPTKASCIKNILSS
Sbjct: 121 TVLSQNTTEANSERAFVSLKSAFSTWEDVLSAESKCIEDAIRCGGLAPTKASCIKNILSS 180

Query: 181 LSKRRSKLCLEYLHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240
           LSKRR KLCLE+L +LS+DEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVF+IAK
Sbjct: 181 LSKRRGKLCLEFLRDLSVDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFQIAK 240

Query: 241 FIGWVPNEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRKGSEDQS 300
           F+GWVP++ADRNKTYLHLN+RIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQR GSE+QS
Sbjct: 241 FVGWVPDDADRNKTYLHLNKRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRMGSEEQS 300

Query: 301 CPLLKYSKIP 306
           CPL KYS  P
Sbjct: 301 CPLFKYSNNP 307

[Close]

BLAST of Sed0013262 vs. NCBI nr
Match: XP_023541273.1 (putative DNA glycosylase At3g47830 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 516.9 bits (1330), Expect = 1.2e-142
Identity = 261/308 (84.74%), Postives = 277/308 (89.94%), Query Frame = 0


Query: 1   MKKTTMTTCKKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLS 60
           MKK   TTCKKRR QKPEP  DS +NG R+KSI+TVNGFNCST+EPYPA+ SPTSD+CLS
Sbjct: 1   MKK---TTCKKRRLQKPEPNGDSPANGPRAKSIRTVNGFNCSTSEPYPAYSSPTSDECLS 60

Query: 61  VRDDLFNLHGFPREFVKYRKEREK---CCSAVD--GGELVENAKSETVDEKESVLDGLVR 120
           VRDDL NLHGFPREFVKYRKERE+   CCS VD  GGEL EN KS      ESVLDGLV+
Sbjct: 61  VRDDLLNLHGFPREFVKYRKERERLSECCSVVDGSGGELAENVKS------ESVLDGLVK 120

Query: 121 TVLSQNTTEVNSERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSS 180
           TVLSQNTTE NSE+AFASLKSAFATWE VLSAESKC+EDAIRCGGLA TKASCIKNILSS
Sbjct: 121 TVLSQNTTEANSEKAFASLKSAFATWEDVLSAESKCIEDAIRCGGLALTKASCIKNILSS 180

Query: 181 LSKRRSKLCLEYLHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240
           LSKRR KLCLEYLH+LSIDE+KAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK
Sbjct: 181 LSKRRGKLCLEYLHHLSIDEVKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240

Query: 241 FIGWVPNEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRKGSEDQS 300
           FIGWVP+EADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKC+K+TG RQRK  E+QS
Sbjct: 241 FIGWVPDEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCSKRTGGRQRKVPENQS 299

Query: 301 CPLLKYSK 304
           CPLLKYSK
Sbjct: 301 CPLLKYSK 299

[Close]

BLAST of Sed0013262 vs. NCBI nr
Match: XP_038894941.1 (putative DNA glycosylase At3g47830 [Benincasa hispida])

HSP 1 Score: 516.5 bits (1329), Expect = 1.5e-142
Identity = 260/308 (84.42%), Postives = 277/308 (89.94%), Query Frame = 0


Query: 1   MKKTTMTTCKKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLS 60
           MKK   TT KKRR QKPEP  DS  NG  +KSI+TVNGFN ST++PYPAH SPTSD+CLS
Sbjct: 1   MKK---TTGKKRRLQKPEPSPDSCFNGPPAKSIRTVNGFNFSTSDPYPAHSSPTSDECLS 60

Query: 61  VRDDLFNLHGFPREFVKYRKEREK---CCSAVDG--GELVENAKSETVDEKESVLDGLVR 120
           VRDDL NLHGFPREF+KYRKERE+   CCS VDG  GE  +N +SE VDEKESVLDGLVR
Sbjct: 61  VRDDLLNLHGFPREFLKYRKERERLSECCSIVDGGRGEHRDNVESEPVDEKESVLDGLVR 120

Query: 121 TVLSQNTTEVNSERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSS 180
           TVLSQNTTE NSERAF+SLKSAFATWE VLSAESK +EDAIRCGGLAPTKASCIKNILSS
Sbjct: 121 TVLSQNTTEANSERAFSSLKSAFATWEDVLSAESKSIEDAIRCGGLAPTKASCIKNILSS 180

Query: 181 LSKRRSKLCLEYLHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240
           LSKRR KLCLEYLH LS+DEIK EL+TFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK
Sbjct: 181 LSKRRGKLCLEYLHGLSVDEIKTELTTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240

Query: 241 FIGWVPNEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRKGSEDQS 300
           FIGWVP++ADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTK+TGARQRKGSE+QS
Sbjct: 241 FIGWVPDDADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKRTGARQRKGSEEQS 300

Query: 301 CPLLKYSK 304
           CPL KYSK
Sbjct: 301 CPLFKYSK 305

[Close]

BLAST of Sed0013262 vs. NCBI nr
Match: XP_011651429.1 (putative DNA glycosylase At3g47830 [Cucumis sativus] >KGN64289.1 hypothetical protein Csa_013980 [Cucumis sativus])

HSP 1 Score: 515.8 bits (1327), Expect = 2.6e-142
Identity = 258/310 (83.23%), Postives = 278/310 (89.68%), Query Frame = 0


Query: 1   MKKTTMTTCKKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLS 60
           MKK   TT KKRR QKPEP ADSHS+G + KSI+TVNGFNCST +PYPAH SPTSD+CLS
Sbjct: 1   MKK---TTGKKRRLQKPEPPADSHSDGPQFKSIRTVNGFNCSTIDPYPAHSSPTSDECLS 60

Query: 61  VRDDLFNLHGFPREFVKYRKEREK---CCSAVDG--GELVENAKSETVDEKESVLDGLVR 120
           VRDDL NLHGFPREF+KYRKERE+   CCS VDG   E  +N +SE VDEKESVLDGLV+
Sbjct: 61  VRDDLLNLHGFPREFLKYRKERERLSECCSVVDGVRAEHRDNVESEFVDEKESVLDGLVK 120

Query: 121 TVLSQNTTEVNSERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSS 180
           TVLSQNTTE NSERAFASLKSAFA WE VLSAESKC+EDAIRCGGLA TKASCIKNILSS
Sbjct: 121 TVLSQNTTEANSERAFASLKSAFAAWEDVLSAESKCIEDAIRCGGLASTKASCIKNILSS 180

Query: 181 LSKRRSKLCLEYLHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240
           LSKRR KLCLE+L +LSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVF+IAK
Sbjct: 181 LSKRRGKLCLEFLRDLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFQIAK 240

Query: 241 FIGWVPNEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRKGSEDQS 300
           F+GWVP++ADRNKTYLHLN+RIPNHLKFDLNCLLYTHGKLCSKCTKKTG RQR+GSE+QS
Sbjct: 241 FVGWVPDDADRNKTYLHLNKRIPNHLKFDLNCLLYTHGKLCSKCTKKTGTRQRRGSEEQS 300

Query: 301 CPLLKYSKIP 306
           CPL KYS  P
Sbjct: 301 CPLFKYSYNP 307

[Close]

BLAST of Sed0013262 vs. ExPASy Swiss-Prot
Match: F4JCQ3 (Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana OX=3702 GN=At3g47830 PE=3 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.3e-91
Identity = 173/294 (58.84%), Postives = 214/294 (72.79%), Query Frame = 0


Query: 10  KKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLSVRDDLFNLH 69
           K++R  K     D  S    +KS  TV+G N     PYP    PT+++C  VRD L +LH
Sbjct: 6   KRKRLNK----YDGESKTPANKS--TVDGGN-----PYPTLLRPTAEECRDVRDALLSLH 65

Query: 70  GFPREFVKYRKEREKCCSAVDGGELVENAKSETVD--EKESVLDGLVRTVLSQNTTEVNS 129
           GFP EF  YR++R +  SAVD  +   N KSET++  E+ESVLDGLV+ +LSQNTTE NS
Sbjct: 66  GFPPEFANYRRQRLRSFSAVDDHDTQCNLKSETLNETEEESVLDGLVKILLSQNTTESNS 125

Query: 130 ERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSSLSKRRSKLCLEY 189
           +RAFASLK+ F  W+ VL+AESK +E+AIRCGGLAP KA CIKNIL+ L   R +LCLEY
Sbjct: 126 QRAFASLKATFPKWDDVLNAESKSIENAIRCGGLAPKKAVCIKNILNRLQNERGRLCLEY 185

Query: 190 LHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKFIGWVPNEADRN 249
           L  LS++E+K ELS FKG+GPKTV+CVLMFNLQ +DFPVDTHVFEIAK +GWVP  ADRN
Sbjct: 186 LRGLSVEEVKTELSHFKGVGPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWVPKTADRN 245

Query: 250 KTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRKGSEDQSCPLLKY 302
           KTY+HLN++IP+ LKFDLNCLLYTHGK+CS C K     + K +    CPL+ +
Sbjct: 246 KTYVHLNRKIPDELKFDLNCLLYTHGKICSNCKKNVAKPKAKVASPDDCPLVGF 288

[Close]

BLAST of Sed0013262 vs. ExPASy Swiss-Prot
Match: C7IW64 (Protein ROS1A OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1A PE=1 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.8e-13
Identity = 59/206 (28.64%), Postives = 95/206 (46.12%), Query Frame = 0


Query: 54   TSDQCLSVRDDLFNLHGFPREFVKYRKEREKCCSAVD-GGELVENAKSETVDEKESVLDG 113
            +S+ C + + +   LHG     ++  K+ +K    V   G   +  +     +K    D 
Sbjct: 1346 SSNLCQNQKANSEVLHGVSSNLIENSKDDKKTSPKVPVDGSKAKRPRVGAGKKKTYDWDM 1405

Query: 114  LVRTVLSQNTTEVNSERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNI 173
            L + VL  +  +  S+ A  S+      WE +  AE K + D IR  G+    A  IK+ 
Sbjct: 1406 LRKEVLYSHGNKERSQNAKDSI-----DWETIRQAEVKEISDTIRERGMNNMLAERIKDF 1465

Query: 174  LSSLSKRRSKLCLEYLHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFE 233
            L+ L +    + LE+L  +  D+ K  L + +G+G K+V CV +  L    FPVDT+V  
Sbjct: 1466 LNRLVRDHGSIDLEWLRYVDSDKAKDYLLSIRGLGLKSVECVRLLTLHHMAFPVDTNVGR 1525

Query: 234  IAKFIGWVPNEADRNKTYLHLNQRIP 259
            I   +GWVP +       LHL +  P
Sbjct: 1526 ICVRLGWVPLQPLPESLQLHLLEMYP 1546

[Close]

BLAST of Sed0013262 vs. ExPASy Swiss-Prot
Match: Q9SJQ6 (DNA glycosylase/AP lyase ROS1 OS=Arabidopsis thaliana OX=3702 GN=ROS1 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-10
Identity = 52/182 (28.57%), Postives = 82/182 (45.05%), Query Frame = 0


Query: 85   CCSAVDGG-------ELVENAKSETVDEKESV-LDGLVRTVLSQNTTEVNSERAFASLKS 144
            CCS  DG         L E  K    +EK++   D L R   ++      +     ++  
Sbjct: 826  CCSQQDGDVLSCQKPTLKEKGKKVLKEEKKAFDWDCLRREAQARAGIREKTRSTMDTV-- 885

Query: 145  AFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSSLSKRRSKLCLEYLHNLSIDEI 204
                W+ + +A+ K + + I+  G+    A  I+  L  L      + LE+L ++  D+ 
Sbjct: 886  ---DWKAIRAADVKEVAETIKSRGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVPPDKA 945

Query: 205  KAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKFIGWVPNEADRNKTYLHLNQR 259
            K  L +F G+G K+V CV +  L    FPVDT+V  IA  +GWVP +       LHL + 
Sbjct: 946  KEYLLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEM 1002

[Close]

BLAST of Sed0013262 vs. ExPASy Swiss-Prot
Match: Q9SR66 (DEMETER-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=DML2 PE=3 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 5.5e-10
Identity = 52/181 (28.73%), Postives = 90/181 (49.72%), Query Frame = 0


Query: 79  RKEREKCCSAVDGGELVENAKSETVDEKESV-LDGLVRTVLSQNTTEVNSERAFASLKSA 138
           +K R+K  ++    +  E+AKS    +K+SV  D L +   S       +ER   ++   
Sbjct: 762 KKNRKKPTTSKPKKKSKESAKS---TQKKSVDWDSLRKEAESGGRKRERTERTMDTV--- 821

Query: 139 FATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSSLSKRRSKLCLEYLHNLSIDEIK 198
              W+ +   +   + + I   G+    A  IK  L+ L K+   + LE+L ++  D+ K
Sbjct: 822 --DWDALRCTDVHKIANIIIKRGMNNMLAERIKAFLNRLVKKHGSIDLEWLRDVPPDKAK 881

Query: 199 AELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKFIGWVPNEADRNKTYLHLNQRI 258
             L +  G+G K+V CV + +L +  FPVDT+V  IA  +GWVP +   ++  +HL +  
Sbjct: 882 EYLLSINGLGLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLELY 934

[Close]

BLAST of Sed0013262 vs. ExPASy Swiss-Prot
Match: B8YIE8 (Protein ROS1C OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1C PE=2 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 5.5e-10
Identity = 40/118 (33.90%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 141  WEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSSLSKRRSKLCLEYLHNLSIDEIKAEL 200
            WE V  A+ + +  AIR  G+    A  I+  L+ L      + LE+L ++  D  K  L
Sbjct: 1339 WEAVRCADVQRISHAIRERGMNNVLAERIQKFLNRLVTDHGSIDLEWLRDVPPDSAKDYL 1398

Query: 201  STFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKFIGWVPNEADRNKTYLHLNQRIP 259
             + +G+G K+V CV +  L    FPVDT+V  I   +GWVP +       LHL +  P
Sbjct: 1399 LSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRICVRLGWVPIQPLPESLQLHLLELYP 1456

[Close]

BLAST of Sed0013262 vs. ExPASy TrEMBL
Match: A0A6J1JWG0 (putative DNA glycosylase At3g47830 OS=Cucurbita maxima OX=3661 GN=LOC111490296 PE=4 SV=1)

HSP 1 Score: 520.4 bits (1339), Expect = 5.1e-144
Identity = 265/309 (85.76%), Postives = 278/309 (89.97%), Query Frame = 0


Query: 1   MKKTTMTTCKKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLS 60
           MKK   TTCKKRR QKPEP  DSHSNG R+KSI+TVNGF+CST EPYPA+ SPTSD+CLS
Sbjct: 1   MKK---TTCKKRRLQKPEPDGDSHSNGPRAKSIRTVNGFDCSTNEPYPAYSSPTSDECLS 60

Query: 61  VRDDLFNLHGFPREFVKYRKEREK---CCSAVD--GGELVENAKSETVDEKESVLDGLVR 120
           VRDDL NLHGFPREFV YRKERE+   CCS VD  GGEL EN KS      ESVLDGLVR
Sbjct: 61  VRDDLLNLHGFPREFVIYRKERERLSECCSVVDGSGGELAENVKS------ESVLDGLVR 120

Query: 121 TVLSQNTTEVNSERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSS 180
           TVLSQNTTE NSE+AFASLKSAFATWE VLSAESKC+EDAIRCGGLAPTKASCIKNILSS
Sbjct: 121 TVLSQNTTEANSEKAFASLKSAFATWEDVLSAESKCIEDAIRCGGLAPTKASCIKNILSS 180

Query: 181 LSKRRSKLCLEYLHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240
           LSKRR KLCLEYLHNLSIDE+KAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK
Sbjct: 181 LSKRRGKLCLEYLHNLSIDEVKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240

Query: 241 FIGWVPNEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKT-GARQRKGSEDQ 300
           FIGWVP+EADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKC+K+T G RQRK SE+Q
Sbjct: 241 FIGWVPDEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCSKRTGGGRQRKVSENQ 300

Query: 301 SCPLLKYSK 304
           SCPLLKYSK
Sbjct: 301 SCPLLKYSK 300

[Close]

BLAST of Sed0013262 vs. ExPASy TrEMBL
Match: A0A5D3BJ43 (Putative DNA glycosylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003430 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 2.5e-143
Identity = 259/310 (83.55%), Postives = 279/310 (90.00%), Query Frame = 0


Query: 1   MKKTTMTTCKKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLS 60
           MKK   TT KKRR QKPEP ADSHS+  R+KSI+TVNGFNCSTTEPYPAH SPTSD+CLS
Sbjct: 1   MKK---TTGKKRRLQKPEPPADSHSDRPRAKSIRTVNGFNCSTTEPYPAHSSPTSDECLS 60

Query: 61  VRDDLFNLHGFPREFVKYRKEREK---CCSAVDG--GELVENAKSETVDEKESVLDGLVR 120
           VRDDL NLHGFPREF+KYRKERE+   CCS VDG   E  +N +SE V EKESVLDGLV+
Sbjct: 61  VRDDLLNLHGFPREFLKYRKERERLSECCSFVDGVRAEHGDNVESELVVEKESVLDGLVK 120

Query: 121 TVLSQNTTEVNSERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSS 180
           TVLSQNTTE NSERAF SLKSAF+TWE VLSAESKC+EDAIRCGGLAPTKASCIKNILSS
Sbjct: 121 TVLSQNTTEANSERAFVSLKSAFSTWEDVLSAESKCIEDAIRCGGLAPTKASCIKNILSS 180

Query: 181 LSKRRSKLCLEYLHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240
           LSKRR KLCLE+L +LS+DEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVF+IAK
Sbjct: 181 LSKRRGKLCLEFLRDLSVDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFQIAK 240

Query: 241 FIGWVPNEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRKGSEDQS 300
           F+GWVP++ADRNKTYLHLN+RIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQR GSE+QS
Sbjct: 241 FVGWVPDDADRNKTYLHLNKRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRMGSEEQS 300

Query: 301 CPLLKYSKIP 306
           CPL KYS  P
Sbjct: 301 CPLFKYSNNP 307

[Close]

BLAST of Sed0013262 vs. ExPASy TrEMBL
Match: A0A1S3AW45 (putative DNA glycosylase At3g47830 OS=Cucumis melo OX=3656 GN=LOC103483287 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 2.5e-143
Identity = 259/310 (83.55%), Postives = 279/310 (90.00%), Query Frame = 0


Query: 1   MKKTTMTTCKKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLS 60
           MKK   TT KKRR QKPEP ADSHS+  R+KSI+TVNGFNCSTTEPYPAH SPTSD+CLS
Sbjct: 1   MKK---TTGKKRRLQKPEPPADSHSDRPRAKSIRTVNGFNCSTTEPYPAHSSPTSDECLS 60

Query: 61  VRDDLFNLHGFPREFVKYRKEREK---CCSAVDG--GELVENAKSETVDEKESVLDGLVR 120
           VRDDL NLHGFPREF+KYRKERE+   CCS VDG   E  +N +SE V EKESVLDGLV+
Sbjct: 61  VRDDLLNLHGFPREFLKYRKERERLSECCSFVDGVRAEHGDNVESELVVEKESVLDGLVK 120

Query: 121 TVLSQNTTEVNSERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSS 180
           TVLSQNTTE NSERAF SLKSAF+TWE VLSAESKC+EDAIRCGGLAPTKASCIKNILSS
Sbjct: 121 TVLSQNTTEANSERAFVSLKSAFSTWEDVLSAESKCIEDAIRCGGLAPTKASCIKNILSS 180

Query: 181 LSKRRSKLCLEYLHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240
           LSKRR KLCLE+L +LS+DEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVF+IAK
Sbjct: 181 LSKRRGKLCLEFLRDLSVDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFQIAK 240

Query: 241 FIGWVPNEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRKGSEDQS 300
           F+GWVP++ADRNKTYLHLN+RIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQR GSE+QS
Sbjct: 241 FVGWVPDDADRNKTYLHLNKRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRMGSEEQS 300

Query: 301 CPLLKYSKIP 306
           CPL KYS  P
Sbjct: 301 CPLFKYSNNP 307

[Close]

BLAST of Sed0013262 vs. ExPASy TrEMBL
Match: A0A0A0LTF1 (ENDO3c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045870 PE=4 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 1.3e-142
Identity = 258/310 (83.23%), Postives = 278/310 (89.68%), Query Frame = 0


Query: 1   MKKTTMTTCKKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLS 60
           MKK   TT KKRR QKPEP ADSHS+G + KSI+TVNGFNCST +PYPAH SPTSD+CLS
Sbjct: 1   MKK---TTGKKRRLQKPEPPADSHSDGPQFKSIRTVNGFNCSTIDPYPAHSSPTSDECLS 60

Query: 61  VRDDLFNLHGFPREFVKYRKEREK---CCSAVDG--GELVENAKSETVDEKESVLDGLVR 120
           VRDDL NLHGFPREF+KYRKERE+   CCS VDG   E  +N +SE VDEKESVLDGLV+
Sbjct: 61  VRDDLLNLHGFPREFLKYRKERERLSECCSVVDGVRAEHRDNVESEFVDEKESVLDGLVK 120

Query: 121 TVLSQNTTEVNSERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSS 180
           TVLSQNTTE NSERAFASLKSAFA WE VLSAESKC+EDAIRCGGLA TKASCIKNILSS
Sbjct: 121 TVLSQNTTEANSERAFASLKSAFAAWEDVLSAESKCIEDAIRCGGLASTKASCIKNILSS 180

Query: 181 LSKRRSKLCLEYLHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240
           LSKRR KLCLE+L +LSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVF+IAK
Sbjct: 181 LSKRRGKLCLEFLRDLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFQIAK 240

Query: 241 FIGWVPNEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRKGSEDQS 300
           F+GWVP++ADRNKTYLHLN+RIPNHLKFDLNCLLYTHGKLCSKCTKKTG RQR+GSE+QS
Sbjct: 241 FVGWVPDDADRNKTYLHLNKRIPNHLKFDLNCLLYTHGKLCSKCTKKTGTRQRRGSEEQS 300

Query: 301 CPLLKYSKIP 306
           CPL KYS  P
Sbjct: 301 CPLFKYSYNP 307

[Close]

BLAST of Sed0013262 vs. ExPASy TrEMBL
Match: A0A5A7UKV1 (Putative DNA glycosylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G00480 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 2.8e-142
Identity = 257/310 (82.90%), Postives = 278/310 (89.68%), Query Frame = 0


Query: 1   MKKTTMTTCKKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLS 60
           MKK   TT KKRR QKPEP ADSHS+  R+KSI+TVNGFNCSTTEPYP+H SPTSD+CLS
Sbjct: 1   MKK---TTGKKRRLQKPEPPADSHSDRPRAKSIRTVNGFNCSTTEPYPSHSSPTSDECLS 60

Query: 61  VRDDLFNLHGFPREFVKYRKEREK---CCSAVDG--GELVENAKSETVDEKESVLDGLVR 120
           VRDDL NLHGFPREF+KYRKERE+   CC  VDG   E  +N +SE V EKESVLDGLV+
Sbjct: 61  VRDDLLNLHGFPREFLKYRKERERLSECCFFVDGVRAEHGDNVESELVVEKESVLDGLVK 120

Query: 121 TVLSQNTTEVNSERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSS 180
           TVLSQNTTE NSERAF SLKSAF+TWE VLSAESKC+EDAIRCGGLAPTKASCIKNILSS
Sbjct: 121 TVLSQNTTEANSERAFVSLKSAFSTWEDVLSAESKCIEDAIRCGGLAPTKASCIKNILSS 180

Query: 181 LSKRRSKLCLEYLHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAK 240
           LSKRR KLCLE+L +LS+DEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVF+IAK
Sbjct: 181 LSKRRGKLCLEFLRDLSVDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFQIAK 240

Query: 241 FIGWVPNEADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRKGSEDQS 300
           F+GWVP++ADRNKTYLHLN+RIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQR GSE+QS
Sbjct: 241 FVGWVPDDADRNKTYLHLNRRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRMGSEEQS 300

Query: 301 CPLLKYSKIP 306
           CPL KYS  P
Sbjct: 301 CPLFKYSNNP 307

[Close]

BLAST of Sed0013262 vs. TAIR 10
Match: AT3G47830.1 (DNA glycosylase superfamily protein )

HSP 1 Score: 337.8 bits (865), Expect = 9.0e-93
Identity = 173/294 (58.84%), Postives = 214/294 (72.79%), Query Frame = 0


Query: 10  KKRRFQKPEPLADSHSNGARSKSIKTVNGFNCSTTEPYPAHCSPTSDQCLSVRDDLFNLH 69
           K++R  K     D  S    +KS  TV+G N     PYP    PT+++C  VRD L +LH
Sbjct: 6   KRKRLNK----YDGESKTPANKS--TVDGGN-----PYPTLLRPTAEECRDVRDALLSLH 65

Query: 70  GFPREFVKYRKEREKCCSAVDGGELVENAKSETVD--EKESVLDGLVRTVLSQNTTEVNS 129
           GFP EF  YR++R +  SAVD  +   N KSET++  E+ESVLDGLV+ +LSQNTTE NS
Sbjct: 66  GFPPEFANYRRQRLRSFSAVDDHDTQCNLKSETLNETEEESVLDGLVKILLSQNTTESNS 125

Query: 130 ERAFASLKSAFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSSLSKRRSKLCLEY 189
           +RAFASLK+ F  W+ VL+AESK +E+AIRCGGLAP KA CIKNIL+ L   R +LCLEY
Sbjct: 126 QRAFASLKATFPKWDDVLNAESKSIENAIRCGGLAPKKAVCIKNILNRLQNERGRLCLEY 185

Query: 190 LHNLSIDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKFIGWVPNEADRN 249
           L  LS++E+K ELS FKG+GPKTV+CVLMFNLQ +DFPVDTHVFEIAK +GWVP  ADRN
Sbjct: 186 LRGLSVEEVKTELSHFKGVGPKTVSCVLMFNLQHNDFPVDTHVFEIAKALGWVPKTADRN 245

Query: 250 KTYLHLNQRIPNHLKFDLNCLLYTHGKLCSKCTKKTGARQRKGSEDQSCPLLKY 302
           KTY+HLN++IP+ LKFDLNCLLYTHGK+CS C K     + K +    CPL+ +
Sbjct: 246 KTYVHLNRKIPDELKFDLNCLLYTHGKICSNCKKNVAKPKAKVASPDDCPLVGF 288

[Close]

BLAST of Sed0013262 vs. TAIR 10
Match: AT2G36490.1 (demeter-like 1 )

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-11
Identity = 52/182 (28.57%), Postives = 82/182 (45.05%), Query Frame = 0


Query: 85   CCSAVDGG-------ELVENAKSETVDEKESV-LDGLVRTVLSQNTTEVNSERAFASLKS 144
            CCS  DG         L E  K    +EK++   D L R   ++      +     ++  
Sbjct: 826  CCSQQDGDVLSCQKPTLKEKGKKVLKEEKKAFDWDCLRREAQARAGIREKTRSTMDTV-- 885

Query: 145  AFATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSSLSKRRSKLCLEYLHNLSIDEI 204
                W+ + +A+ K + + I+  G+    A  I+  L  L      + LE+L ++  D+ 
Sbjct: 886  ---DWKAIRAADVKEVAETIKSRGMNHKLAERIQGFLDRLVNDHGSIDLEWLRDVPPDKA 945

Query: 205  KAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKFIGWVPNEADRNKTYLHLNQR 259
            K  L +F G+G K+V CV +  L    FPVDT+V  IA  +GWVP +       LHL + 
Sbjct: 946  KEYLLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEM 1002

[Close]

BLAST of Sed0013262 vs. TAIR 10
Match: AT3G10010.1 (demeter-like 2 )

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-11
Identity = 52/181 (28.73%), Postives = 90/181 (49.72%), Query Frame = 0


Query: 79  RKEREKCCSAVDGGELVENAKSETVDEKESV-LDGLVRTVLSQNTTEVNSERAFASLKSA 138
           +K R+K  ++    +  E+AKS    +K+SV  D L +   S       +ER   ++   
Sbjct: 762 KKNRKKPTTSKPKKKSKESAKS---TQKKSVDWDSLRKEAESGGRKRERTERTMDTV--- 821

Query: 139 FATWEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSSLSKRRSKLCLEYLHNLSIDEIK 198
              W+ +   +   + + I   G+    A  IK  L+ L K+   + LE+L ++  D+ K
Sbjct: 822 --DWDALRCTDVHKIANIIIKRGMNNMLAERIKAFLNRLVKKHGSIDLEWLRDVPPDKAK 881

Query: 199 AELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKFIGWVPNEADRNKTYLHLNQRI 258
             L +  G+G K+V CV + +L +  FPVDT+V  IA  +GWVP +   ++  +HL +  
Sbjct: 882 EYLLSINGLGLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLELY 934

[Close]

BLAST of Sed0013262 vs. TAIR 10
Match: AT5G04560.1 (HhH-GPD base excision DNA repair family protein )

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-10
Identity = 39/118 (33.05%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 141  WEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSSLSKRRSKLCLEYLHNLSIDEIKAEL 200
            +E +  A    + +AI+  G+    A  IK+ L  + K    + LE+L     D+ K  L
Sbjct: 1218 YEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYL 1277

Query: 201  STFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKFIGWVPNEADRNKTYLHLNQRIP 259
             + +G+G K+V CV +  L    FPVDT+V  IA  +GWVP +       LHL +  P
Sbjct: 1278 LSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYP 1335

[Close]

BLAST of Sed0013262 vs. TAIR 10
Match: AT5G04560.2 (HhH-GPD base excision DNA repair family protein )

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-10
Identity = 39/118 (33.05%), Postives = 59/118 (50.00%), Query Frame = 0


Query: 141  WEHVLSAESKCLEDAIRCGGLAPTKASCIKNILSSLSKRRSKLCLEYLHNLSIDEIKAEL 200
            +E +  A    + +AI+  G+    A  IK+ L  + K    + LE+L     D+ K  L
Sbjct: 1476 YEAIRRASISEISEAIKERGMNNMLAVRIKDFLERIVKDHGGIDLEWLRESPPDKAKDYL 1535

Query: 201  STFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKFIGWVPNEADRNKTYLHLNQRIP 259
             + +G+G K+V CV +  L    FPVDT+V  IA  +GWVP +       LHL +  P
Sbjct: 1536 LSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLHLLELYP 1593

The following BLAST results are available for this feature:

BLAST of Sed0013262 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022994647.1	1.1e-143	85.76	putative DNA glycosylase At3g47830 [Cucurbita maxima]	[more]
XP_008438070.1	5.2e-143	83.55	PREDICTED: putative DNA glycosylase At3g47830 [Cucumis melo] >TYJ99137.1 putativ...	[more]
XP_023541273.1	1.2e-142	84.74	putative DNA glycosylase At3g47830 [Cucurbita pepo subsp. pepo]	[more]
XP_038894941.1	1.5e-142	84.42	putative DNA glycosylase At3g47830 [Benincasa hispida]	[more]
XP_011651429.1	2.6e-142	83.23	putative DNA glycosylase At3g47830 [Cucumis sativus] >KGN64289.1 hypothetical pr...	[more]

BLAST of Sed0013262 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JCQ3	1.3e-91	58.84	Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana OX=3702 GN=At3g47830 ...	[more]
C7IW64	1.8e-13	28.64	Protein ROS1A OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1A PE=1 SV=2	[more]
Q9SJQ6	1.9e-10	28.57	DNA glycosylase/AP lyase ROS1 OS=Arabidopsis thaliana OX=3702 GN=ROS1 PE=1 SV=2	[more]
Q9SR66	5.5e-10	28.73	DEMETER-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=DML2 PE=3 SV=2	[more]
B8YIE8	5.5e-10	33.90	Protein ROS1C OS=Oryza sativa subsp. japonica OX=39947 GN=ROS1C PE=2 SV=2	[more]

BLAST of Sed0013262 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JWG0	5.1e-144	85.76	putative DNA glycosylase At3g47830 OS=Cucurbita maxima OX=3661 GN=LOC111490296 P...	[more]
A0A5D3BJ43	2.5e-143	83.55	Putative DNA glycosylase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3AW45	2.5e-143	83.55	putative DNA glycosylase At3g47830 OS=Cucumis melo OX=3656 GN=LOC103483287 PE=4 ...	[more]
A0A0A0LTF1	1.3e-142	83.23	ENDO3c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045870 PE=4...	[more]
A0A5A7UKV1	2.8e-142	82.90	Putative DNA glycosylase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of Sed0013262 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47830.1	9.0e-93	58.84	DNA glycosylase superfamily protein	[more]
AT2G36490.1	1.3e-11	28.57	demeter-like 1	[more]
AT3G10010.1	3.9e-11	28.73	demeter-like 2	[more]
AT5G04560.1	5.6e-10	33.05	HhH-GPD base excision DNA repair family protein	[more]
AT5G04560.2	5.6e-10	33.05	HhH-GPD base excision DNA repair family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.30	Hypothetical protein; domain 2	coord: 104..215 e-value: 1.9E-29 score: 104.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR47203	FAMILY NOT NAMED	coord: 11..211
IPR011257	DNA glycosylase	SUPERFAMILY	48150	DNA-glycosylase	coord: 97..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013262.1	Sed0013262.1	mRNA
Sed0013262.2	Sed0013262.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006281	DNA repair
molecular_function	GO:0140078	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
molecular_function	GO:0019104	DNA N-glycosylase activity
molecular_function	GO:0003824	catalytic activity