Sed0013254 (gene) Chayote v1

Overview


Name	Sed0013254
Type	gene
Organism	Sechium edule (Chayote v1)
Description	LysM domain-containing protein
Location	LG13: 1147460 .. 1148085 (+)
RNA-Seq Expression	Sed0013254
Synteny	Sed0013254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAACTAAAATATTTCCCTTCCAATTTCCACCATGGCCGTTTCTATTTCCAAAACTTGGCTACCGCCGTCTCGAACCGACGTCGTTTCATGGTACTGCGCTTTGGGCCTATTGGGCCTGATCCTCGTCGGCTACGTCAGAGATTCCTCCTCCGCCGCGGAAGACGGCGGCCGGAATCTCAAAGGCAACTTGCTGACGTGGCGACCGTGCGACGAGATTTACGTGGTGGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTGTTCCCCGGTTTGGTCATCAAAATTATCTCCTCTTCCAACCCGCCCAAATCCGGGTTGGAAATCCAAACTGCTTAATTTTTTTTCCCATAAATAATACACCACAAAAATTAAAAGGTTTAGATTTTTTTTTTTAATAATTTCCCAGACAGAAATTGTGTGTGTTTTTTTTTCGTTAAGGATATATAGAGGTGGAAGATATATAGTTTAAATATTTTGAGGGAAAGAATTAAGGAATGTTTATTTGTAATTTATCTTTTCTTTTTTCCTTTAATTTCTCTTCTTTTTTTTTCTTTTTTTCTGTTC

mRNA sequence

AAAAAAACTAAAATATTTCCCTTCCAATTTCCACCATGGCCGTTTCTATTTCCAAAACTTGGCTACCGCCGTCTCGAACCGACGTCGTTTCATGGTACTGCGCTTTGGGCCTATTGGGCCTGATCCTCGTCGGCTACGTCAGAGATTCCTCCTCCGCCGCGGAAGACGGCGGCCGGAATCTCAAAGGCAACTTGCTGACGTGGCGACCGTGCGACGAGATTTACGTGGTGGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTGTTCCCCGGTTTGGTCATCAAAATTATCTCCTCTTCCAACCCGCCCAAATCCGGGTTGGAAATCCAAACTGCTTAATTTTTTTTCCCATAAATAATACACCACAAAAATTAAAAGGTTTAGATTTTTTTTTTTAATAATTTCCCAGACAGAAATTGTGTGTGTTTTTTTTTCGTTAAGGATATATAGAGGTGGAAGATATATAGTTTAAATATTTTGAGGGAAAGAATTAAGGAATGTTTATTTGTAATTTATCTTTTCTTTTTTCCTTTAATTTCTCTTCTTTTTTTTTCTTTTTTTCTGTTC

Coding sequence (CDS)

ATGGCCGTTTCTATTTCCAAAACTTGGCTACCGCCGTCTCGAACCGACGTCGTTTCATGGTACTGCGCTTTGGGCCTATTGGGCCTGATCCTCGTCGGCTACGTCAGAGATTCCTCCTCCGCCGCGGAAGACGGCGGCCGGAATCTCAAAGGCAACTTGCTGACGTGGCGACCGTGCGACGAGATTTACGTGGTGGGAGAAGGAGAAACGCTTCACACGATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTGTTCCCCGGTTTGGTCATCAAAATTATCTCCTCTTCCAACCCGCCCAAATCCGGGTTGGAAATCCAAACTGCTTAA

Protein sequence

MAVSISKTWLPPSRTDVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPPKSGLEIQTA

Homology

[Close]

BLAST of Sed0013254 vs. NCBI nr
Match: KAG6576752.1 (hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014795.1 hypothetical protein SDJN02_22424, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-42
Identity = 88/116 (75.86%), Postives = 99/116 (85.34%), Query Frame = 0


Query: 6   SKTWLPPSR--TDVVSWYCALGLLGLILVGYVRD---SSSAAEDGGRNLKGNLLTWRPCD 65
           S+T  P SR   DVVSWYCAL LLGLIL+G +R+   SS++A+DGG+ L+GNLLT R CD
Sbjct: 7   SRTGPPSSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACD 66

Query: 66  EIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPPKSGLE 117
           EIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS NPPK G +
Sbjct: 67  EIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLGFQ 122

[Close]

BLAST of Sed0013254 vs. NCBI nr
Match: XP_008439155.1 (PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Peptidoglycan-binding LysM domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 3.0e-41
Identity = 79/93 (84.95%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 16  DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTIS 75
           DVVSWYCA+GLLGLIL+G +R++SS++ D GR+L+GNL+TWRPCDEIYVVGEGETLHTIS
Sbjct: 23  DVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSLRGNLVTWRPCDEIYVVGEGETLHTIS 82

Query: 76  DKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS 109
           DKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS
Sbjct: 83  DKCGDPFIVERNPHIHDPDDVFPGLVIKIIASS 115

[Close]

BLAST of Sed0013254 vs. NCBI nr
Match: XP_022157015.1 (uncharacterized protein LOC111023841 [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 3.9e-41
Identity = 86/110 (78.18%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 11  PPSR--TDVVSWYCALGLLGLILVGYVRDS--SSAAEDGGRNLKGNLLTWRPCDEIYVVG 70
           P SR  TDVVSWYCA+G+L LIL+G +R+S  S+ A D GR  +GNL+  RPCDEIYVVG
Sbjct: 14  PSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVG 73

Query: 71  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPPKSGLE 117
           EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNP  SGLE
Sbjct: 74  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPSNSGLE 123

[Close]

BLAST of Sed0013254 vs. NCBI nr
Match: XP_022985106.1 (uncharacterized protein LOC111483184 [Cucurbita maxima])

HSP 1 Score: 177.9 bits (450), Expect = 5.0e-41
Identity = 85/115 (73.91%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 6   SKTWLPPSR--TDVVSWYCALGLLGLILVGYVRD--SSSAAEDGGRNLKGNLLTWRPCDE 65
           S+T  P SR   DVVSWYCA+ +LGLIL+G +R+  SS++A+DG + L+GNLLT R CDE
Sbjct: 7   SRTEPPSSRLLIDVVSWYCAVAILGLILIGSIRETSSSASADDGSQMLRGNLLTGRACDE 66

Query: 66  IYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPPKSGLE 117
           IYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS NPPK G +
Sbjct: 67  IYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLGFQ 121

[Close]

BLAST of Sed0013254 vs. NCBI nr
Match: KGN57357.2 (hypothetical protein Csa_009741 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 2.1e-39
Identity = 81/110 (73.64%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 3   VSISKTWLPPSRT----DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRP 62
           VS+ ++  P S +    DVVSWYCA+GLLGLIL+G +R++SS+ +  GR L+GNL+TWRP
Sbjct: 10  VSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSGD--GRLLRGNLVTWRP 69

Query: 63  CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS 109
           CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+SS
Sbjct: 70  CDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIASS 117

[Close]

BLAST of Sed0013254 vs. ExPASy TrEMBL
Match: A0A5A7VAP9 (Peptidoglycan-binding LysM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7478G00010 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-41
Identity = 79/93 (84.95%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 16  DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTIS 75
           DVVSWYCA+GLLGLIL+G +R++SS++ D GR+L+GNL+TWRPCDEIYVVGEGETLHTIS
Sbjct: 23  DVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSLRGNLVTWRPCDEIYVVGEGETLHTIS 82

Query: 76  DKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS 109
           DKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS
Sbjct: 83  DKCGDPFIVERNPHIHDPDDVFPGLVIKIIASS 115

[Close]

BLAST of Sed0013254 vs. ExPASy TrEMBL
Match: A0A1S3AXP2 (uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-41
Identity = 79/93 (84.95%), Postives = 90/93 (96.77%), Query Frame = 0


Query: 16  DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTIS 75
           DVVSWYCA+GLLGLIL+G +R++SS++ D GR+L+GNL+TWRPCDEIYVVGEGETLHTIS
Sbjct: 23  DVVSWYCAVGLLGLILIGSIRETSSSSGDQGRSLRGNLVTWRPCDEIYVVGEGETLHTIS 82

Query: 76  DKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS 109
           DKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS
Sbjct: 83  DKCGDPFIVERNPHIHDPDDVFPGLVIKIIASS 115

[Close]

BLAST of Sed0013254 vs. ExPASy TrEMBL
Match: A0A6J1DRZ3 (uncharacterized protein LOC111023841 OS=Momordica charantia OX=3673 GN=LOC111023841 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.9e-41
Identity = 86/110 (78.18%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 11  PPSR--TDVVSWYCALGLLGLILVGYVRDS--SSAAEDGGRNLKGNLLTWRPCDEIYVVG 70
           P SR  TDVVSWYCA+G+L LIL+G +R+S  S+ A D GR  +GNL+  RPCDEIYVVG
Sbjct: 14  PSSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVG 73

Query: 71  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPPKSGLE 117
           EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNP  SGLE
Sbjct: 74  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPSNSGLE 123

[Close]

BLAST of Sed0013254 vs. ExPASy TrEMBL
Match: A0A6J1J769 (uncharacterized protein LOC111483184 OS=Cucurbita maxima OX=3661 GN=LOC111483184 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.4e-41
Identity = 85/115 (73.91%), Postives = 98/115 (85.22%), Query Frame = 0


Query: 6   SKTWLPPSR--TDVVSWYCALGLLGLILVGYVRD--SSSAAEDGGRNLKGNLLTWRPCDE 65
           S+T  P SR   DVVSWYCA+ +LGLIL+G +R+  SS++A+DG + L+GNLLT R CDE
Sbjct: 7   SRTEPPSSRLLIDVVSWYCAVAILGLILIGSIRETSSSASADDGSQMLRGNLLTGRACDE 66

Query: 66  IYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPPKSGLE 117
           IYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS NPPK G +
Sbjct: 67  IYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPPKLGFQ 121

[Close]

BLAST of Sed0013254 vs. ExPASy TrEMBL
Match: A0A0A0L5R9 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.0e-39
Identity = 81/110 (73.64%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 3   VSISKTWLPPSRT----DVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRP 62
           VS+ ++  P S +    DVVSWYCA+GLLGLIL+G +R++SS+ +  GR L+GNL+TWRP
Sbjct: 4   VSVPRSRRPQSSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSGD--GRLLRGNLVTWRP 63

Query: 63  CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS 109
           CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+SS
Sbjct: 64  CDEIYVVGEGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIASS 111

[Close]

BLAST of Sed0013254 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 120.6 bits (301), Expect = 8.9e-28
Identity = 54/90 (60.00%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 15  TDVVSWYCALGLLGLILVGYVRDSSSAAEDGGRNLKGNLLTWRPCDEIYVVGEGETLHTI 74
           +D+ +W  A+ LL LIL+  VR+++++      +++G+  + +PC+EIY+VGEGETLHTI
Sbjct: 9   SDMSAWCSAVVLLSLILLLSVRENNAS-----NSIRGSQFSTKPCEEIYIVGEGETLHTI 68

Query: 75  SDKCGDPFIVERNPHIHDPDDVFPGLVIKI 105
            DKCGDPFIVERNPHIHDPDDVFPGLV+KI
Sbjct: 69  GDKCGDPFIVERNPHIHDPDDVFPGLVLKI 93

[Close]

BLAST of Sed0013254 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-27
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 13  SRTDVVSWYCALGLLGLILVGYVRDSSSAAED---GGRNL---KGNLLTWRPCDEIYVVG 72
           SR++ V+ YC + LL L L G V++S+         GRN    +G  +  RPC+E+YVVG
Sbjct: 7   SRSNTVASYCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVWRGKQMMERPCEELYVVG 66

Query: 73  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 105
           EG+TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Sbjct: 67  EGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]

BLAST of Sed0013254 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-19
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 0


Query: 18  VSWYCALGLLGLILVGYVRDSSSAAEDGGRNL-----KGNLLTW----RP-CDEIYVVGE 77
           +SWYCA+    ++L+    +S   A++G   +        ++T     RP CDEIY V E
Sbjct: 13  ISWYCAVFAAMMLLM----NSFQVAQEGSTEIVEKQQPSMMITGYSHRRPACDEIYEVKE 72

Query: 78  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 108
           GETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I  S
Sbjct: 73  GETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPS 108

The following BLAST results are available for this feature:

BLAST of Sed0013254 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576752.1	2.7e-42	75.86	hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008439155.1	3.0e-41	84.95	PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Pep...	[more]
XP_022157015.1	3.9e-41	78.18	uncharacterized protein LOC111023841 [Momordica charantia]	[more]
XP_022985106.1	5.0e-41	73.91	uncharacterized protein LOC111483184 [Cucurbita maxima]	[more]
KGN57357.2	2.1e-39	73.64	hypothetical protein Csa_009741 [Cucumis sativus]	[more]

BLAST of Sed0013254 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAP9	1.4e-41	84.95	Peptidoglycan-binding LysM domain-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3AXP2	1.4e-41	84.95	uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=...	[more]
A0A6J1DRZ3	1.9e-41	78.18	uncharacterized protein LOC111023841 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1J769	2.4e-41	73.91	uncharacterized protein LOC111483184 OS=Cucurbita maxima OX=3661 GN=LOC111483184...	[more]
A0A0A0L5R9	1.0e-39	73.64	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 S...	[more]

BLAST of Sed0013254 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62150.1	8.9e-28	60.00	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	1.2e-27	58.16	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	3.4e-19	49.00	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 63..104 e-value: 2.1E-4 score: 21.3
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 62..104 e-value: 3.80582E-5 score: 36.6945
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 54..113 e-value: 4.1E-7 score: 31.4
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 15..108
None	No IPR available	PANTHER	PTHR33648:SF23	LYSM DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 15..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013254.1	Sed0013254.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity