Sed0013251 (gene) Chayote v1

Overview


Name	Sed0013251
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase domain-containing protein
Location	LG09: 27492800 .. 27495399 (+)
RNA-Seq Expression	Sed0013251
Synteny	Sed0013251

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCCGTGGCGAAGTGTTTACGCGGTGTCGCTCTCAGAATAATAGGGTGGTTCTAAAGGAAAGATTGGATCGCGGTTTATGTAATGATGCTTTGTGGGACTTGTTTCCTCATTCTGTGGTTAATAATTTGGATTTTTGGGGGTCTGATCACTGCCCAGTGGAAGTTTAGTTGTTACAGTTGCCTCCCTTTTGCTTGAAGGGTAGAAAATTCTTTCGCTTTGAGTAAGTGTGGTCTTCTCAAGATGGTTGCGAGGATCTGATTCGTCATTGCTAGAATGCTTCCTCAGGAAAGGATTTGTCTGGTAGGCTGAAGCAGTGTTCGTCGACTTTGTCGAGGTGGGGAGCCGATAAAAAAGGCTCTTATGGTAGGAAAATTGCCCTGGCTCGAGAAGTTCTCCAAAGGGTCATTGCCTCTAATTCTAATTCGGACCCTTTGAGAAGGCATTTGGGAAATTTATTGTTAGAAGAGGAGACCTATTGGCGTCAGCGGTCTCGGGTTGATTGGTAAAAATGTGGAGACATGAATTCCAAATGGTTCCATGCATGTGCATCCAAATGTCGGAGGTCTAACCTTATTTCTAGTTTGCTTTTGGAGGATGGTCGTCGGCTTGATTCAGCTAGCGATATTGAGATCGAGATTGGTAACTACTTTGGCAAGCTCTTCTCCACTAATGGACCTGGGCCTATTGGTGCTATCTCAGATTTGTTTCACAAGGTTAGTCCAGTTGTTTCCCCTTCGCTAGCTTCTCGTATGTCTTCTCCATTTTCGGAAGAAAAGGTTTTACATTTCCTTAAGGGGATGGGGTCCTCGAAGGCCCTAGGAGTTGATGGCTTCACAATTTATTTTTATTAAAAATACTGGGATATAGTGGGCCACGAGGTGTTACGTTTTGTTCTCTTTATCCTGAATGATAGGGGAGATGTTACGAGTATTAATCTCACAGCTATTACCTTGATCCCTAAGTCTCAAAATGCTAGTTCTCTAAAAGATTTTAGGCCTATCAGCTTGTGTAACGTGGTTTATAAATTGGTGTCTAAAACGATTTCAAATCACTTGCGGAAGTACCTGAAAGCTATTATTTCCCTTTGTCAGAGTGCTTTCGTTCTTGGTAGGAGTATTTCTGATAACGCCCTTCTTGGTTTTGAATGTCTCCACTATCTTAAGAGTCGGAAGTCAGGTAGGAAGGGTGCGGCCTCCTTGAAGTTGGACATGAGTAAAGCTTATGATAGGGTTGAATGAGCCTTTCTAGAAAAGTTTATGTTGGCCTTGGGTTTTGAGGCTAGGTTTGTGGGGTTGATTATGAGGTGTATTTCTTCGGTACAATATACCTTCAATGTTAATGGGGTTAGATCGGGCAAGGTGATTCCGTCTAGAGGGCAAAGACAAGGGGACCCTTTGTCTCCTTATTTATTCATTCTTTGTATTGAAGGCCTCTCTCGAATTTTAAATTCTCTTGAGGATGATCACTCTATTACAGGTATTAAAGTTGCTCGTAGAGCGCCTGCTATCACTCATCTTTTTTTTACTGATGACTGTCTTCTTTTCTTTCGAGCTAAAGAGGTTGAAGCCCAATTAATTTTGGACGCTTTGCAATTCTACACCAAGTTGACAGGCCAAGAGGTTAATTTCGATAAGTCATCTATTTGCTTTAGTCCAAATTCAGAGAAAGCGGATATCGATTTGATTGCTAATAAGCTGCAGGTGGTCCAAGTTGACCAACACCTTAAGTATCTGGGGATTCCTGCTTCTCTTAATGGGTCAAAGAAGTTGTCATTCAAGTTCCTCAAGGATAGGTTATGGAAAAATCTCTTTAAGTGGAAACACAAATTCTTTTTTGTAGGGGGAAAGGAAGTTCTCATTAAATCAGTCTTGCAGGCTCTTCCCACTTAGTGCATGAATTTCTTTAAAGTTCCCATCACAATCATCCAAGAGTGTCATCATATTATTTCCTGCTTCTGGTGGGGCGATGATGAAGACAGAAAGCGGATCCATTGGGTTTCGTGGAAGCAAGCTTGCCTCTCTAAATGTAAGAGGGGTCGTGGGTTACGAGATCTTCATTTGTTTAACCAGGCTCTGTTGGCTAAGCAAGGTTGGCGTATCCTGACAGCCCCTGAGTCCTTATTGTTGCGGGTTCTGAAGGCAAAATATTTTCATTCCTGTTCCTTTTTGGAAGTGAAGAAATCAACTTCATCTTCATTTACATGGAAACGTATTTTATGGGGGAAGGGAACTCCTCCAAAAGGTTATTAAATGGAGAGTTTGGTGATGGTCGTTCTATTGATGTTTGTAATGATAACTGGATCCCTAGGTAACGTTCCTTGAAAGTGTTGTGCTCTACGGGTGTTGTTCAGGGAACTAAAGTAGCAGTGTTCATTTCCCCATCGGGTGCTTGGGATGGTGGGAAATTAGAGGAGCTTTTATGTCGAGATGATGTAGAGAAGGTTTTGAAGATGCCCCGTCTAAGTCCTCCATGGAACGATCGGGTGTTGTGGAACTATGATTCTTTGGGTTGTTTTAGTGTGAAATTAGCCTATCGCCCCGCCTGTAATTCTCAGGTCCTCCCTTCGAGTTGGAATGCGGATGTTTCGGTGTAG

mRNA sequence

ATGGGTTTCCGTGGCGAAGTGTTTACGCGGTGTCGCTCTCAGAATAATAGGGTGGTTCTAAAGGAAAGATTGGATCGCGGAAAGGATTTGTCTGGTAGGCTGAAGCAGTGTTCGTCGACTTTGTCGAGGTGGGGAGCCGATAAAAAAGGCTCTTATGGTAGGAAAATTGCCCTGGCTCGAGAAGTTCTCCAAAGGGATGGTCGTCGGCTTGATTCAGCTAGCGATATTGAGATCGAGATTGGTAACTACTTTGGCAAGCTCTTCTCCACTAATGGACCTGGGCCTATTGGTGCTATCTCAGATTTGTTTCACAAGGTTAGTCCAGTTGTTTCCCCTTCGCTAGCTTCTCGTATGTCTTCTCCATTTTCGGAAGAAAAGGGAACTAAAGTAGCAGTGTTCATTTCCCCATCGGGTGCTTGGGATGGTGGGAAATTAGAGGAGCTTTTATGTCGAGATGATGTAGAGAAGGTTTTGAAGATGCCCCGTCTAAGTCCTCCATGGAACGATCGGGTGTTGTGGAACTATGATTCTTTGGGTTGTTTTAGTGTGAAATTAGCCTATCGCCCCGCCTGTAATTCTCAGGTCCTCCCTTCGAGTTGGAATGCGGATGTTTCGGTGTAG

Coding sequence (CDS)

ATGGGTTTCCGTGGCGAAGTGTTTACGCGGTGTCGCTCTCAGAATAATAGGGTGGTTCTAAAGGAAAGATTGGATCGCGGAAAGGATTTGTCTGGTAGGCTGAAGCAGTGTTCGTCGACTTTGTCGAGGTGGGGAGCCGATAAAAAAGGCTCTTATGGTAGGAAAATTGCCCTGGCTCGAGAAGTTCTCCAAAGGGATGGTCGTCGGCTTGATTCAGCTAGCGATATTGAGATCGAGATTGGTAACTACTTTGGCAAGCTCTTCTCCACTAATGGACCTGGGCCTATTGGTGCTATCTCAGATTTGTTTCACAAGGTTAGTCCAGTTGTTTCCCCTTCGCTAGCTTCTCGTATGTCTTCTCCATTTTCGGAAGAAAAGGGAACTAAAGTAGCAGTGTTCATTTCCCCATCGGGTGCTTGGGATGGTGGGAAATTAGAGGAGCTTTTATGTCGAGATGATGTAGAGAAGGTTTTGAAGATGCCCCGTCTAAGTCCTCCATGGAACGATCGGGTGTTGTGGAACTATGATTCTTTGGGTTGTTTTAGTGTGAAATTAGCCTATCGCCCCGCCTGTAATTCTCAGGTCCTCCCTTCGAGTTGGAATGCGGATGTTTCGGTGTAG

Protein sequence

MGFRGEVFTRCRSQNNRVVLKERLDRGKDLSGRLKQCSSTLSRWGADKKGSYGRKIALAREVLQRDGRRLDSASDIEIEIGNYFGKLFSTNGPGPIGAISDLFHKVSPVVSPSLASRMSSPFSEEKGTKVAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRPACNSQVLPSSWNADVSV

Homology

[Close]

BLAST of Sed0013251 vs. NCBI nr
Match: XP_030502714.1 (uncharacterized protein LOC115717884 [Cannabis sativa])

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-06
Identity = 29/75 (38.67%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 128 TKVAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAY 187
           TK++ FIS SG WD  KL       D++ +L++P       D ++W+ +S G F+VK AY
Sbjct: 711 TKLSFFISDSGYWDSTKLRNHFYESDIQDILEVPITGFSGKDDIIWSRESSGLFTVKSAY 770

Query: 188 RPACNSQVLPSSWNA 203
             A ++Q +PSS +A
Sbjct: 771 HLALSTQDIPSSSSA 785

[Close]

BLAST of Sed0013251 vs. NCBI nr
Match: XP_030479179.1 (uncharacterized protein LOC115696417 [Cannabis sativa])

HSP 1 Score: 63.2 bits (152), Expect = 3.1e-06
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 130 VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRP 189
           ++ FISPSG+WD GKL        VE +L++P      ND ++W  ++ G F+VK AY  
Sbjct: 812 LSFFISPSGSWDRGKLSNFFANTLVEDILQVPLSGCNCNDTMIWGPEATGTFTVKSAYHL 871

Query: 190 ACNSQVLPSS 200
           A  S+ +P+S
Sbjct: 872 AIQSRDIPTS 881

[Close]

BLAST of Sed0013251 vs. NCBI nr
Match: XP_030502376.1 (uncharacterized protein LOC115717528 [Cannabis sativa])

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-06
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 130 VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRP 189
           ++ FI+ SG WD GKL+       V  +L +P      +D+++W  +S GCF+VK AY  
Sbjct: 585 LSFFITDSGTWDVGKLQSCFDESMVHDILAVPVFGSYGHDKLIWEKESSGCFTVKSAYHL 644

Query: 190 ACNSQVLPSS 200
           A ++Q LPSS
Sbjct: 645 AFSNQDLPSS 654

[Close]

BLAST of Sed0013251 vs. NCBI nr
Match: XP_030479177.1 (uncharacterized protein LOC115696415 [Cannabis sativa])

HSP 1 Score: 61.6 bits (148), Expect = 9.1e-06
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 130 VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRP 189
           ++ FIS SG WD GKL+       V+ +L +P      +D+ +W  +S GCF++K AY  
Sbjct: 873 LSFFISDSGTWDVGKLQSCFDESMVKDILAVPISGHYGHDKQIWEKESSGCFTIKSAYHL 932

Query: 190 ACNSQVLPSS 200
           A ++Q LPSS
Sbjct: 933 AFSNQDLPSS 942

[Close]

BLAST of Sed0013251 vs. NCBI nr
Match: KAG5556480.1 (hypothetical protein RHGRI_006924 [Rhododendron griersonianum])

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-05
Identity = 44/161 (27.33%), Postives = 70/161 (43.48%), Query Frame = 0


Query: 66  DGRRLDSASDIEIEIGNYFGKLFSTNGPGPIGAISDLFHKVSPVVSPSLASRMSSPFSEE 125
           DG   +S  DI +EIG+YF  LF  +GP      S     +SP V+  +   ++   ++E
Sbjct: 145 DGVWKESEDDINLEIGHYFTSLFEDDGPRD---FSTSIEHISPSVTREMNRILTKQVTDE 204

Query: 126 K-----------GTKVAVFISP-SGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLW 185
           +              VA FI+P S  W   KL ++L  ++V+ V  +P       D ++W
Sbjct: 205 EIRVAVFQMGALKAPVADFINPTSDEWRIAKLRQVLSEEEVQAVANIPISKLGGADSIIW 264

Query: 186 NYDSLGCFSVKLAY-------------RPACNSQVLPSSWN 202
                G ++VK  Y             RP+ ++   PS WN
Sbjct: 265 GLHPSGKYTVKRGYHKAWSDYIDSKPERPSTSTVPGPSFWN 302

[Close]

BLAST of Sed0013251 vs. ExPASy TrEMBL
Match: A0A803QGZ6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 130 VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRP 189
           ++ FISPSG+WD GKL        VE +L++P      ND ++W  ++ G F+VK AY  
Sbjct: 622 LSFFISPSGSWDRGKLSNFFANTLVEDILQVPLSGCNCNDTMIWGPEATGTFTVKSAYHL 681

Query: 190 ACNSQVLPSS 200
           A  S+ +P+S
Sbjct: 682 AIQSRDIPTS 691

[Close]

BLAST of Sed0013251 vs. ExPASy TrEMBL
Match: A0A803P2U6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 130  VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRP 189
            ++ FIS SG WD GKL+       V+ +L +P      +D+ +W  +S GCF+VK AY  
Sbjct: 1353 LSFFISDSGTWDVGKLQSCFDESMVKDILAVPISGHYGHDKQIWEKESSGCFTVKSAYHL 1412

Query: 190  ACNSQVLPSS 200
            A ++Q LPSS
Sbjct: 1413 AFSNQDLPSS 1422

[Close]

BLAST of Sed0013251 vs. ExPASy TrEMBL
Match: A0A803Q8N8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.5e-06
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 130 VAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLWNYDSLGCFSVKLAYRP 189
           ++ FISPSG+WD GKL        VE +L++P      ND ++W  +++G F+VK AY  
Sbjct: 352 LSFFISPSGSWDRGKLNNFFDNILVEDILQVPISGHNCNDTMIWGPEAIGMFTVKSAYHL 411

Query: 190 ACNSQVLPSS 200
           +  S  +P+S
Sbjct: 412 SLQSHDMPTS 421

[Close]

BLAST of Sed0013251 vs. ExPASy TrEMBL
Match: A0A803QBD3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 114 LASRMSSPFSEEKGTKVAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLW 173
           + S  S P SE   + ++ F+SPSGAWD  KL +      ++ +L +P      +D ++W
Sbjct: 570 IKSYSSLPPSE---STLSFFLSPSGAWDPIKLHQFFDEQTIDHILDVPISGNGCSDDLIW 629

Query: 174 NYDSLGCFSVKLAYRPACNSQVLPSSWNAD 204
           + +S G F+VK AY  A  S+ +PSS + D
Sbjct: 630 SRNSSGIFTVKSAYHLAVTSRDIPSSSSFD 656

[Close]

BLAST of Sed0013251 vs. ExPASy TrEMBL
Match: A0A803NK25 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-05
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 0


Query: 114 LASRMSSPFSEEKGTKVAVFISPSGAWDGGKLEELLCRDDVEKVLKMPRLSPPWNDRVLW 173
           + S  S P SE   + ++ F+SPSGAWD  KL +      ++ +L +P      +D ++W
Sbjct: 454 IKSYSSLPPSE---STLSFFLSPSGAWDPIKLHQFFDEQTIDHILDVPISGNGCSDDLIW 513

Query: 174 NYDSLGCFSVKLAYRPACNSQVLPSSWNAD 204
           + +S G F+VK AY  A  S+ +PSS + D
Sbjct: 514 SRNSSGIFTVKSAYHLAVTSRDIPSSSSFD 540

The following BLAST results are available for this feature:

BLAST of Sed0013251 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_030502714.1	1.8e-06	38.67	uncharacterized protein LOC115717884 [Cannabis sativa]	[more]
XP_030479179.1	3.1e-06	40.00	uncharacterized protein LOC115696417 [Cannabis sativa]	[more]
XP_030502376.1	4.1e-06	40.00	uncharacterized protein LOC115717528 [Cannabis sativa]	[more]
XP_030479177.1	9.1e-06	40.00	uncharacterized protein LOC115696415 [Cannabis sativa]	[more]
KAG5556480.1	2.0e-05	27.33	hypothetical protein RHGRI_006924 [Rhododendron griersonianum]	[more]

BLAST of Sed0013251 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A803QGZ6	1.5e-06	40.00	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803P2U6	3.4e-06	41.43	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803Q8N8	7.5e-06	38.57	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803QBD3	1.3e-05	35.56	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A803NK25	1.3e-05	35.56	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Sed0013251 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013251.1	Sed0013251.1	mRNA