Sed0013248 (gene) Chayote v1

Overview


Name	Sed0013248
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG10: 2820800 .. 2821024 (+)
RNA-Seq Expression	Sed0013248
Synteny	Sed0013248

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAAATATTATAGAGTGGTGAGTAACAACAATGTTAGTAAGAGATCAGAAAGGAGCAACAATAGTTGCCATTCGACGTGGTCACCAGTTTCAGATCTCAAATTACCTTCAATAATCGGAGATCGAGATGTTCACTCGCATATCGACGATGTCCTCCATGGTCGTAAATCGACAAGTCGTTTACTGGTATTCAAACAAATATGCCCTGATGAAAATTGA

mRNA sequence

ATGGAGAAGAAATATTATAGAGTGGTGAGTAACAACAATGTTAGTAAGAGATCAGAAAGGAGCAACAATAGTTGCCATTCGACGTGGTCACCAGTTTCAGATCTCAAATTACCTTCAATAATCGGAGATCGAGATGTTCACTCGCATATCGACGATGTCCTCCATGGTCGTAAATCGACAAGTCGTTTACTGGTATTCAAACAAATATGCCCTGATGAAAATTGA

Coding sequence (CDS)

ATGGAGAAGAAATATTATAGAGTGGTGAGTAACAACAATGTTAGTAAGAGATCAGAAAGGAGCAACAATAGTTGCCATTCGACGTGGTCACCAGTTTCAGATCTCAAATTACCTTCAATAATCGGAGATCGAGATGTTCACTCGCATATCGACGATGTCCTCCATGGTCGTAAATCGACAAGTCGTTTACTGGTATTCAAACAAATATGCCCTGATGAAAATTGA

Protein sequence

MEKKYYRVVSNNNVSKRSERSNNSCHSTWSPVSDLKLPSIIGDRDVHSHIDDVLHGRKSTSRLLVFKQICPDEN

Homology

[Close]

BLAST of Sed0013248 vs. NCBI nr
Match: KGN48424.1 (hypothetical protein Csa_003981 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 4.5e-16
Identity = 46/79 (58.23%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 2  EKKYYRVVS--NNNVSKRSER--SNNSCHSTWSPVSDLKLPSII--GDRDVHSHIDDVLH 61
          +K+YYRVV+  NN ++K+ E+  +NN+ +S+WSP+SDLKLP  +  GD+DV + ID+VLH
Sbjct: 3  QKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNVLH 62

Query: 62 GRKSTSRLLVFKQICPDEN 75
          G K+T+RLLVFKQICPD+N
Sbjct: 63 GPKTTARLLVFKQICPDQN 81

[Close]

BLAST of Sed0013248 vs. ExPASy TrEMBL
Match: A0A0A0KHZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.2e-16
Identity = 46/79 (58.23%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 2  EKKYYRVVS--NNNVSKRSER--SNNSCHSTWSPVSDLKLPSII--GDRDVHSHIDDVLH 61
          +K+YYRVV+  NN ++K+ E+  +NN+ +S+WSP+SDLKLP  +  GD+DV + ID+VLH
Sbjct: 3  QKRYYRVVNNKNNGINKKQEKNNNNNNSNSSWSPISDLKLPQQLANGDQDVQTQIDNVLH 62

Query: 62 GRKSTSRLLVFKQICPDEN 75
          G K+T+RLLVFKQICPD+N
Sbjct: 63 GPKTTARLLVFKQICPDQN 81

The following BLAST results are available for this feature:

BLAST of Sed0013248 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48424.1	4.5e-16	58.23	hypothetical protein Csa_003981 [Cucumis sativus]	[more]

BLAST of Sed0013248 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013248 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHZ5	2.2e-16	58.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486965 PE=4 SV=1	[more]

BLAST of Sed0013248 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013248.1	Sed0013248.1	mRNA