Sed0013241 (gene) Chayote v1

Overview


Name	Sed0013241
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein RADIALIS-like 3
Location	LG04: 47343813 .. 47345311 (+)
RNA-Seq Expression	Sed0013241
Synteny	Sed0013241

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGATTCTTAACTTTATATCTTCACACTCCACACTTGTGGCTGAAAGTGCAACCAGTGACATATAGATTCTTCCAGCTTGCAACTTCAATTAATTGCTTCAAATATACATACAGTACATATATATAATCACTTTCTTCATTGTTCTTCATATATAATAAAAAAAAAAAAAACAAAGATCCATCTCCAATGGCTTCGAGCTCTTTGAAGCAGCACCGACAGGAGGCGACGTGGACCGCAAAGCAGAACAAGCTGTTCGAGAAGGCACTGGCTTTGTATGACAAAGATACGCCGGAAAGATGGCAGAACATAGCAAAAGCGGTCGGTGGGAAGTCGGCCGACGACGTCGAAAGACACTATGAGGTACTCTTGGAAGATCTCCGGCGAATTGAGTCCGGCCGAGTGCCTATTCCCCATTACAGAGGCGCCGGCAATGGAGATGAAGAGTTGAGGTTAGTGAAGATGATAGAAAGAATGAAATATTTTTAACTCAAGCTCTGGTTGTATTTTTATTCTTTTAATTGTGGGGAACAATTTAGATTTTTTTAAAAAAAATTCTATTTTTTTGTGATAAAAATACTATTTTGATTACCGTAATTTGATTTTATATTGGTCATTTTGAATTTTAAATTAAAATTCAAATATTAAATTAAACTCAAATTACGGTAAAAAAAATTGATCTCGGTTATAGATTTAAAAAACATTTAATCTCTATCAGCTTCAAAAAATAAAAAAAAAATTGAAAACTAAATTTAAATTATTTTAGAAAGTAAACTTCTATATTAAAAATGATCACAAAATTTGTTGTTTTTTTTTTGAGTTCATAAATTACAAGACTTTATGGACCAACAATATCTCGTATTAAAATATATATGGGATTCACTTTTACATTAAAAGAAAAAAAAATATAGTCCCCAAAGTATGGCGTAGTGGTTGCTCGAGCTTTCTCTTTTAAAAATATGTTTATATTATATGATTTTGGAATAATTTTTATTAAATTAAATTCAAATTTATTATAAGTGTCACTTTTAAATGTATATTGAAAGTAGAATGAAATCTAAATGTGGTCTATAATTATCTGTTTTCTTGGGACGTGGTGGTGGTTTGATTAAATAATTATCTATCTTTGTTTTTGTTTTTTTTTTGTTTCCATTTCAAAAGACACTCTCTACGCAATTTTTTTAGTTTATTGTTCTTTCCCAGCCAAATCTATTTATATATTTGAAGTAATTTTAGTGTCCATTTGATTAATTTCAACAACCATTTAAGTGATAGATAAAATATTTTAGTGCCTTTGGTATGAGCATAAATAAGCTAAATGGGAATATTGAATTAATGCCTTTTTATTTTGATGTTTGCTATTGCTAGGCTGCTCAAGTTTCTAAAGCTGCAATGAAGTTGCCTACCACTGCCATATTCAATCAGCTCTCATCAAAATTACAAACTAATTAAATTATGTTGTACACAATTATGGCTCACTTGGCTAGATGAATTCATACAT

mRNA sequence

CAGATTCTTAACTTTATATCTTCACACTCCACACTTGTGGCTGAAAGTGCAACCAGTGACATATAGATTCTTCCAGCTTGCAACTTCAATTAATTGCTTCAAATATACATACAGTACATATATATAATCACTTTCTTCATTGTTCTTCATATATAATAAAAAAAAAAAAAACAAAGATCCATCTCCAATGGCTTCGAGCTCTTTGAAGCAGCACCGACAGGAGGCGACGTGGACCGCAAAGCAGAACAAGCTGTTCGAGAAGGCACTGGCTTTGTATGACAAAGATACGCCGGAAAGATGGCAGAACATAGCAAAAGCGGTCGGTGGGAAGTCGGCCGACGACGTCGAAAGACACTATGAGGTACTCTTGGAAGATCTCCGGCGAATTGAGTCCGGCCGAGTGCCTATTCCCCATTACAGAGGCGCCGGCAATGGAGATGAAGAGTTGAGGCTGCTCAAGTTTCTAAAGCTGCAATGAAGTTGCCTACCACTGCCATATTCAATCAGCTCTCATCAAAATTACAAACTAATTAAATTATGTTGTACACAATTATGGCTCACTTGGCTAGATGAATTCATACAT

Coding sequence (CDS)

ATGGCTTCGAGCTCTTTGAAGCAGCACCGACAGGAGGCGACGTGGACCGCAAAGCAGAACAAGCTGTTCGAGAAGGCACTGGCTTTGTATGACAAAGATACGCCGGAAAGATGGCAGAACATAGCAAAAGCGGTCGGTGGGAAGTCGGCCGACGACGTCGAAAGACACTATGAGGTACTCTTGGAAGATCTCCGGCGAATTGAGTCCGGCCGAGTGCCTATTCCCCATTACAGAGGCGCCGGCAATGGAGATGAAGAGTTGAGGCTGCTCAAGTTTCTAAAGCTGCAATGA

Protein sequence

MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ

Homology

[Close]

BLAST of Sed0013241 vs. NCBI nr
Match: XP_023554816.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.9 bits (442), Expect = 3.4e-40
Identity = 85/96 (88.54%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
          MASSSLKQ R EATWTAKQNKLFEKALALYDK+TPERW NIA AVGGKSAD+V+RHYE+L
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ 97
          LEDLRRIESGRVPIP+YRGA NGDEELRLLK+LKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Sed0013241 vs. NCBI nr
Match: XP_022975322.1 (protein RADIALIS-like 3 [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 4.9e-39
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
          MASSSLKQ R EATWTAKQNKLFEKALALYDK+ PERW NIA AVGGKSAD+V+RHYE+L
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ 97
          LEDL+RIESGRVPIP+YRGA NGDEELRLLK+LKLQ
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Sed0013241 vs. NCBI nr
Match: XP_022952671.1 (protein RADIALIS-like 3 [Cucurbita moschata])

HSP 1 Score: 170.6 bits (431), Expect = 6.4e-39
Identity = 83/96 (86.46%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
          MASSSLKQ R EATWTAKQNKLFEKALALYDK+TPERW NIA AVGGKSAD+V+RHYE+L
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ 97
          LEDL RIESGRVPIP+YRG  NGDEELRLLK+LKLQ
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Sed0013241 vs. NCBI nr
Match: XP_038888995.1 (protein RADIALIS-like 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 170.6 bits (431), Expect = 6.4e-39
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
          MASSSLKQ R E TWTAKQNKLFEKALALYDK+TPERW NIA AVGGKS D+V+RHYEVL
Sbjct: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSTDEVKRHYEVL 60

Query: 61 LEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ 97
          LEDLRRIESGRVPIP+YRG GN DEELRLLK+LKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 96

[Close]

BLAST of Sed0013241 vs. NCBI nr
Match: KAG6572047.1 (Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 170.2 bits (430), Expect = 8.4e-39
Identity = 82/96 (85.42%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
          MA+SSLKQ R EATWTAKQNKLFEKALALYDK+TPERW NIA AVGGKSAD+V+RHYE+L
Sbjct: 1  MATSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ 97
          LEDLRRIESG VPIP+YRG  NGDEELRLLK+LKLQ
Sbjct: 61 LEDLRRIESGHVPIPNYRGVHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Sed0013241 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.5e-25
Identity = 55/103 (53.40%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
           MASSS+      ++WT+KQNK+FE+ALA+YDKDTP+RWQN+AKAVG KSA++V+RHY++L
Sbjct: 1   MASSSMS---SSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRRIESGRVPIPHY-------RGAGNGDEELRLLKFLKLQ 97
           +EDL  IE   VP+P Y       +  G  D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Sed0013241 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23
Identity = 53/101 (52.48%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
           MASSS+   +   +WTAKQNK FE+ALA YD+DTP RWQN+AK VGGK+ ++V+RHYE+L
Sbjct: 1   MASSSMSS-QSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRRIESGRVPIPHYRGAG---NG--DEELRLLKFLKLQ 97
           ++D+  IE+G VP P+YR +G   NG   +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of Sed0013241 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.3e-23
Identity = 50/82 (60.98%), Postives = 65/82 (79.27%), Query Frame = 0


Query: 1  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
          MAS+S+      A+WT K+NKLFE+ALA YD+DTP+RW N+A+AVGGKSA++V RHYE+L
Sbjct: 1  MASNSMS---SSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLRRIESGRVPIPHYRGAGN 83
          + D+  IESGR P P+YR  GN
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]

BLAST of Sed0013241 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-22
Identity = 47/86 (54.65%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 15 WTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPI 74
          WT  QNK+FE+ALA+YDKDTP+RW N+AKAVGGK+ ++V+RHY++L+EDL  IE+GRVP+
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 75 PHYR-----GAGNGDEELRLLKFLKL 96
          P+Y+          D + R +K LK+
Sbjct: 72 PNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Sed0013241 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.3e-21
Identity = 40/67 (59.70%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 15 WTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPI 74
          W+AK+NK FE+ALA+YDKDTP+RW N+A+AV G++ ++V++HYE+L+ED++ IESG+VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PHYRGAG 82
          P+YR  G
Sbjct: 71 PNYRTTG 77

[Close]

BLAST of Sed0013241 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.4e-39
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
          MASSSLKQ R EATWTAKQNKLFEKALALYDK+ PERW NIA AVGGKSAD+V+RHYE+L
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ 97
          LEDL+RIESGRVPIP+YRGA NGDEELRLLK+LKLQ
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Sed0013241 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.1e-39
Identity = 83/96 (86.46%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
          MASSSLKQ R EATWTAKQNKLFEKALALYDK+TPERW NIA AVGGKSAD+V+RHYE+L
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ 97
          LEDL RIESGRVPIP+YRG  NGDEELRLLK+LKLQ
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRLLKYLKLQ 96

[Close]

BLAST of Sed0013241 vs. ExPASy TrEMBL
Match: A0A1S3BHB0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.3e-39
Identity = 82/96 (85.42%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
          MASSSLKQ R E TWT KQNKLFEKALALYDKDTPERWQNIA AVGGKSAD+V+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ 97
          LEDLR+IESGRVPIP+YRG  N DEELRLLK+LKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of Sed0013241 vs. ExPASy TrEMBL
Match: A0A0A0K2A2 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.5e-38
Identity = 82/96 (85.42%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
          MASSSLKQ R E TWT KQNKLFEKALALYDKDTPERWQNIA AVGGKSAD+V+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRRIESGRVPIPHYRGAGNGDEELRLLKFLKLQ 97
          LEDLRRIESGRVPIP+YR   N DEELRLLK+LKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]

BLAST of Sed0013241 vs. ExPASy TrEMBL
Match: A0A6J1C2H2 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.5e-38
Identity = 83/100 (83.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
           MASSSLKQ R EATWTAKQNKLFEKALALYDK+TPERWQNIA AVGGKSAD+V+RHY++L
Sbjct: 1   MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIANAVGGKSADEVKRHYQIL 60

Query: 61  LEDLRRIESGRVPIPHYR----GAGNGDEELRLLKFLKLQ 97
           LEDLRRIESGRVPIP+YR     AGN DEELRLLK+LKL+
Sbjct: 61  LEDLRRIESGRVPIPNYRASAXAAGNADEELRLLKYLKLR 100

[Close]

BLAST of Sed0013241 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 114.8 bits (286), Expect = 3.9e-26
Identity = 55/103 (53.40%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
           MASSS+      ++WT+KQNK+FE+ALA+YDKDTP+RWQN+AKAVG KSA++V+RHY++L
Sbjct: 1   MASSSMS---SSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRRIESGRVPIPHY-------RGAGNGDEELRLLKFLKLQ 97
           +EDL  IE   VP+P Y       +  G  D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Sed0013241 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 110.2 bits (274), Expect = 9.6e-25
Identity = 53/101 (52.48%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 1   MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
           MASSS+   +   +WTAKQNK FE+ALA YD+DTP RWQN+AK VGGK+ ++V+RHYE+L
Sbjct: 1   MASSSMSS-QSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRRIESGRVPIPHYRGAG---NG--DEELRLLKFLKLQ 97
           ++D+  IE+G VP P+YR +G   NG   +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]

BLAST of Sed0013241 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-23
Identity = 47/86 (54.65%), Postives = 66/86 (76.74%), Query Frame = 0


Query: 15 WTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPI 74
          WT  QNK+FE+ALA+YDKDTP+RW N+AKAVGGK+ ++V+RHY++L+EDL  IE+GRVP+
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 75 PHYR-----GAGNGDEELRLLKFLKL 96
          P+Y+          D + R +K LK+
Sbjct: 72 PNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Sed0013241 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 104.4 bits (259), Expect = 5.3e-23
Identity = 42/64 (65.62%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 15 WTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVLLEDLRRIESGRVPI 74
          WT  QNK+FE+ALA+YDKDTP+RW N+AKAVGGK+ ++V+RHY++L+EDL  IE+GRVP+
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 75 PHYR 79
          P+Y+
Sbjct: 72 PNYK 75

[Close]

BLAST of Sed0013241 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 99.0 bits (245), Expect = 2.2e-21
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 1  MASSSLKQHRQEATWTAKQNKLFEKALALYDKDTPERWQNIAKAVGGKSADDVERHYEVL 60
          MASSS+      ++WTA+++K FE ALA +DKDTP+RWQ IA+AVGGKS ++V+RHYE+L
Sbjct: 1  MASSSM----STSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELL 60

Query: 61 LEDLRRIESGRVPIPHYR 79
          L D+  IESGR P P YR
Sbjct: 61 LRDVNDIESGRYPQPRYR 74

The following BLAST results are available for this feature:

BLAST of Sed0013241 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554816.1	3.4e-40	88.54	protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]	[more]
XP_022975322.1	4.9e-39	86.46	protein RADIALIS-like 3 [Cucurbita maxima]	[more]
XP_022952671.1	6.4e-39	86.46	protein RADIALIS-like 3 [Cucurbita moschata]	[more]
XP_038888995.1	6.4e-39	86.46	protein RADIALIS-like 3 isoform X1 [Benincasa hispida]	[more]
KAG6572047.1	8.4e-39	85.42	Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0013241 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW75	5.5e-25	53.40	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
F4JVB8	1.4e-23	52.48	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q6NNN0	2.3e-23	60.98	Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1	[more]
Q1A173	2.0e-22	54.65	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q58FS3	6.3e-21	59.70	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Sed0013241 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ICR6	2.4e-39	86.46	protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1	[more]
A0A6J1GKW1	3.1e-39	86.46	protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1	[more]
A0A1S3BHB0	5.3e-39	85.42	protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1	[more]
A0A0A0K2A2	1.5e-38	85.42	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 S...	[more]
A0A6J1C2H2	3.5e-38	83.00	protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111007854 PE=4 SV=1	[more]

BLAST of Sed0013241 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G19510.1	3.9e-26	53.40	RAD-like 5	[more]
AT4G39250.1	9.6e-25	52.48	RAD-like 1	[more]
AT1G75250.2	1.4e-23	54.65	RAD-like 6	[more]
AT1G75250.1	5.3e-23	65.63	RAD-like 6	[more]
AT2G18328.1	2.2e-21	60.26	RAD-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 11..63 e-value: 1.5E-7 score: 41.1
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 7..61 score: 6.550801
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 14..61 e-value: 2.30652E-6 score: 39.0958
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..60 e-value: 5.3E-6 score: 26.5
None	No IPR available	GENE3D	1.10.10.60		coord: 6..74 e-value: 2.4E-23 score: 83.7
None	No IPR available	PANTHER	PTHR43952:SF29	PROTEIN RADIALIS-LIKE 3	coord: 1..79
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..79
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 10..65 score: 9.500059
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 15..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013241.1	Sed0013241.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003723	RNA binding