Sed0013214 (gene) Chayote v1

Overview


Name	Sed0013214
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein RALF-like 10
Location	LG06: 7203883 .. 7204104 (-)
RNA-Seq Expression	Sed0013214
Synteny	Sed0013214

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAATCATGGTTGGTATGTTTGGTTTTAATTAGTATATTGGTGATGGGCCAAGAAGTAGCAGCACAGAAAAAGTATCTTAACATTTTGGATAGCTTCAAACAACCTAATCTGCCTCCACGTCGTTCTTTATTATCTACAAGTGATGTTTCTAATCCTATTCCTGCCAATCCCTATAATCGAGGTTGCTCGGCTCATCATCGTTGTCGTGGAAAATAA

mRNA sequence

ATGAAGCAATCATGGTTGGTATGTTTGGTTTTAATTAGTATATTGGTGATGGGCCAAGAAGTAGCAGCACAGAAAAAGTATCTTAACATTTTGGATAGCTTCAAACAACCTAATCTGCCTCCACGTCGTTCTTTATTATCTACAAGTGATGTTTCTAATCCTATTCCTGCCAATCCCTATAATCGAGGTTGCTCGGCTCATCATCGTTGTCGTGGAAAATAA

Coding sequence (CDS)

ATGAAGCAATCATGGTTGGTATGTTTGGTTTTAATTAGTATATTGGTGATGGGCCAAGAAGTAGCAGCACAGAAAAAGTATCTTAACATTTTGGATAGCTTCAAACAACCTAATCTGCCTCCACGTCGTTCTTTATTATCTACAAGTGATGTTTCTAATCCTATTCCTGCCAATCCCTATAATCGAGGTTGCTCGGCTCATCATCGTTGTCGTGGAAAATAA

Protein sequence

MKQSWLVCLVLISILVMGQEVAAQKKYLNILDSFKQPNLPPRRSLLSTSDVSNPIPANPYNRGCSAHHRCRGK

Homology

[Close]

BLAST of Sed0013214 vs. NCBI nr
Match: XP_038877580.1 (protein RALF-like 11 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-12
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYLNILDSFKQPNLPPRRSLLSTSDVSNPIPANPYNR 62
          +SWL+C+V IS+LV+G  VAA+KKYL  LD   QPN PP     + S+V   + ANPYNR
Sbjct: 2  KSWLICVVFISMLVVGPGVAAEKKYLQFLDPCNQPNPPP-----TCSEVKEQVEANPYNR 61

Query: 63 GCSAHHRCRG 73
          GCSA HRCRG
Sbjct: 62 GCSAIHRCRG 66

[Close]

BLAST of Sed0013214 vs. NCBI nr
Match: XP_022947821.1 (protein RALF-like 10 [Cucurbita moschata])

HSP 1 Score: 71.2 bits (173), Expect = 4.0e-09
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYLNILDSFKQPNLPPRRSLLSTSDVSNPIPANPYNR 62
          +SWL+CLVLI +LV+ Q+VA++ K+L   D  +QPN PP  S      + N +PANPY R
Sbjct: 2  RSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCS------IGNAVPANPYRR 61

Query: 63 GCSAHHRCRG 73
          GCS   RCRG
Sbjct: 62 GCSKITRCRG 65

[Close]

BLAST of Sed0013214 vs. NCBI nr
Match: XP_023533089.1 (protein RALF-like 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYLNILDSFKQPNLPPRRSLLSTSDVSNPIPANPYNR 62
          +SWL+C+VLIS+LV+ QEVA++ K+L   D  +QPN P     L  S + N +PANPY R
Sbjct: 2  RSWLICIVLISMLVVSQEVASETKFLKFPDPCQQPNPP-----LGCS-IGNAVPANPYRR 61

Query: 63 GCSAHHRCRG 73
          GCS   RCRG
Sbjct: 62 GCSKITRCRG 65

[Close]

BLAST of Sed0013214 vs. NCBI nr
Match: KAE8637268.1 (hypothetical protein CSA_017684 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-08
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYLNILDSFKQPNLPPRRSLLSTSDVSNPIPANPYNR 62
          +SWL+C+V IS+LVM QEV AQ  +L   +    P+ PP  S    S V +  P NPY+R
Sbjct: 2  KSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCS----SKVKDHAPTNPYDR 61

Query: 63 GCSAHHRCRG 73
          GCSA HRCRG
Sbjct: 62 GCSAIHRCRG 67

[Close]

BLAST of Sed0013214 vs. NCBI nr
Match: XP_016900883.1 (PREDICTED: protein RALF-like 30 [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-06
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYLNILDSFKQPNLPPRRSLLSTSDVSNPIPANPYNR 62
          +SWL+C  L+S+LVMG EVAA+ K+L  LD   QP+  P RS      V +PI    Y+R
Sbjct: 2  KSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPS--PPRSCYKHERVDSPI---AYDR 61

Query: 63 GCSAHHRCRG 73
          GCS   RCRG
Sbjct: 62 GCSPILRCRG 66

[Close]

BLAST of Sed0013214 vs. ExPASy TrEMBL
Match: A0A6J1G7J2 (protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYLNILDSFKQPNLPPRRSLLSTSDVSNPIPANPYNR 62
          +SWL+CLVLI +LV+ Q+VA++ K+L   D  +QPN PP  S      + N +PANPY R
Sbjct: 2  RSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCS------IGNAVPANPYRR 61

Query: 63 GCSAHHRCRG 73
          GCS   RCRG
Sbjct: 62 GCSKITRCRG 65

[Close]

BLAST of Sed0013214 vs. ExPASy TrEMBL
Match: A0A0A0M0X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-08
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYLNILDSFKQPNLPPRRSLLSTSDVSNPIPANPYNR 62
          +SWL+C+V IS+LVM QEV AQ  +L   +    P+ PP  S    S V +  P NPY+R
Sbjct: 2  KSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCS----SKVKDHAPTNPYDR 61

Query: 63 GCSAHHRCRG 73
          GCSA HRCRG
Sbjct: 62 GCSAIHRCRG 67

[Close]

BLAST of Sed0013214 vs. ExPASy TrEMBL
Match: A0A0A0LI94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.8e-08
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYLNILDSFKQPNLPPRRSLLSTSDVSNPIPANPYNR 62
          +SWL+CL LI +LV+GQEVAA+ K+L  +D   QP+ PP     +  +      ANPYNR
Sbjct: 2  KSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPP-----TCPNRDKVEEANPYNR 61

Query: 63 GCSAHHRCRG 73
           CSA +RCRG
Sbjct: 62 DCSAINRCRG 66

[Close]

BLAST of Sed0013214 vs. ExPASy TrEMBL
Match: A0A1S4DY33 (protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-06
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYLNILDSFKQPNLPPRRSLLSTSDVSNPIPANPYNR 62
          +SWL+C  L+S+LVMG EVAA+ K+L  LD   QP+  P RS      V +PI    Y+R
Sbjct: 2  KSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPS--PPRSCYKHERVDSPI---AYDR 61

Query: 63 GCSAHHRCRG 73
          GCS   RCRG
Sbjct: 62 GCSPILRCRG 66

[Close]

BLAST of Sed0013214 vs. ExPASy TrEMBL
Match: A0A0A0LZK3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-05
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYLNILDSFKQPNLPPRRSLLSTSDVSNPIPANPYNR 62
          +SWL+C  L+S+LVM  EVAA+ K+LN  D   QP+  P +S        +PI   PY+R
Sbjct: 35 KSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPS--PPKSCYKDERADSPI---PYDR 94

Query: 63 GCSAHHRCRG 73
          GCS   RCRG
Sbjct: 95 GCSPILRCRG 99

[Close]

BLAST of Sed0013214 vs. TAIR 10
Match: AT2G19030.1 (ralf-like 11 )

HSP 1 Score: 43.1 bits (100), Expect = 1.1e-04
Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYL--NILDSFKQPNLPPRRSLLSTSDVSNPIPANPY 62
          ++WL+CL++I   V+ + V + + Y+    ++    PN PP  +    ++  NP P N Y
Sbjct: 2  KAWLICLLVICAAVIAEPVES-RNYIEYGAINKCAGPNPPPGCN-PPGAEQKNPTPVNEY 61

Query: 63 NRGCSAHHRCR 72
          +RGCS  HRCR
Sbjct: 62 SRGCSKIHRCR 70

[Close]

BLAST of Sed0013214 vs. TAIR 10
Match: AT2G19045.1 (RALF-like 13 )

HSP 1 Score: 41.2 bits (95), Expect = 4.2e-04
Identity = 24/71 (33.80%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYL--NILDSFKQPNLPPRRSLLSTSDVSNPIPANPY 62
          ++W++CL++I   V+ + V + + Y+    ++    PN PP  +    ++  NP P N Y
Sbjct: 2  KAWVICLLVICAAVIAEPVES-RNYIEYGAINKCAGPNPPPGCN-PPGAEQKNPNPVNEY 61

Query: 63 NRGCSAHHRCR 72
          +RGCS  HRCR
Sbjct: 62 SRGCSKIHRCR 70

[Close]

BLAST of Sed0013214 vs. TAIR 10
Match: AT2G19040.1 (RALF-like 12 )

HSP 1 Score: 40.0 bits (92), Expect = 9.3e-04
Identity = 24/71 (33.80%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 3  QSWLVCLVLISILVMGQEVAAQKKYL--NILDSFKQPNLPPRRSLLSTSDVSNPIPANPY 62
          ++W++ L++I  +V+ + V + + Y+    ++    PN PP  +   T +  NP P N Y
Sbjct: 2  KAWVIGLLVICAVVIAEPVES-RNYIEYGAINKCAGPNPPPGCNPPGT-EQKNPTPVNEY 61

Query: 63 NRGCSAHHRCR 72
          +RGCS  HRCR
Sbjct: 62 SRGCSKIHRCR 70

The following BLAST results are available for this feature:

BLAST of Sed0013214 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877580.1	2.3e-12	58.57	protein RALF-like 11 [Benincasa hispida]	[more]
XP_022947821.1	4.0e-09	51.43	protein RALF-like 10 [Cucurbita moschata]	[more]
XP_023533089.1	1.2e-08	52.86	protein RALF-like 10 [Cucurbita pepo subsp. pepo]	[more]
KAE8637268.1	5.8e-08	51.43	hypothetical protein CSA_017684 [Cucumis sativus]	[more]
XP_016900883.1	5.5e-06	50.00	PREDICTED: protein RALF-like 30 [Cucumis melo]	[more]

BLAST of Sed0013214 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0013214 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G7J2	2.0e-09	51.43	protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1	[more]
A0A0A0M0X3	2.8e-08	51.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1	[more]
A0A0A0LI94	4.8e-08	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1	[more]
A0A1S4DY33	2.6e-06	50.00	protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=3 SV=1	[more]
A0A0A0LZK3	1.0e-05	47.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=3 SV=1	[more]

BLAST of Sed0013214 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19030.1	1.1e-04	35.21	ralf-like 11	[more]
AT2G19045.1	4.2e-04	33.80	RALF-like 13	[more]
AT2G19040.1	9.3e-04	33.80	RALF-like 12	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 20..72 e-value: 3.7E-8 score: 34.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..73
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 3..72
None	No IPR available	PANTHER	PTHR34270:SF5	PROTEIN RALF-LIKE 10-RELATED	coord: 3..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013214.1	Sed0013214.1	mRNA