Sed0013198 (gene) Chayote v1

Overview


Name	Sed0013198
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ribosomal RNA-processing protein 40
Location	LG08: 724700 .. 729127 (-)
RNA-Seq Expression	Sed0013198
Synteny	Sed0013198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCTTCCACTCCCAATTATTCCAATCGCCGACTTCATCAAGTGTACAAATTCTCATTTACTTTGCAGAAAGTTTTTGTATCTGTAACCATGGTTGAAAAATCTTCCAGTTCATCGTCTACTCTCGTCGATCAACCAGTTGTAAGTTCGAAATCAATCTCGTTTGTCCGTTTCCCTTTCTTTTTCCCTGATTTATGTTTTGAAACCTGTAAATGAAATGGAGTTTTCGTATATCTTTACTGGAATTTTGATTGATTAGGTTCCTGGCGATGTGGTTCTTGACCTCTCAAACATGGCCAACGAGACCATCAGGCTTGTCGGCGGTCTTCGACAGGTATCTATTAGGGTTTTCTTTTTTCAATGTTTATGCATTTCCATATATGTTACTGACCCCTTTTTAACAATCGCCAGTTTCTTCAGCGATTATAGATTTAGTTTTCATCAACTTTTTGACAATTGAATGTACTTCGATTGCCGTCTACGTTAACTGACTTACTGATCAAGATGGTCTTAAGTAAGTGATGAGTTCAATATATGATGGCCACTTAAGAATTAATTTCCTACCGATTTTCTTGACATCCAAACATTATAGGATAAGTCGGTATGTTCCGTTACAATAGTTGAGGTTTGTAAGTTGCCCTCTTTTAAGTTAGCGATGAGTTCAATCTATGACGACCATTAGAAATTAATTTCCTACTAATTTCATTCACATTCAAATATTATGAAATGAGTCCGTATATTCCGTGATAACAGTCGATTGTGTGTCAGCTGGTCTCAAAATGTCATTTATATTTAAAAAAAAAAAAAGAACGTTGTCTTGGTTTCAGCAATCAAATTTCGCATTGTTGCACTGCACTTGTGTTTATTAGGGCATTATTTAACTTCGTTTATCTTAATCTTTCAGGACCATGATGCTATTTCTGTTGCCAAAGTTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGGTCAGTAAATGACTTTGTTCAATTGGCAATGGGGATCCGTTTACTGTTTGTTATTTTTGCTAACTTTTGAATTCTGCACTTCAATTGCTAGTTTCGGTTGTTTTCCTCGGTTGAAGTTTACTAGGATTTATTTCTTAATATCATTCGGATACAACCCCGGTGGTTAAATGTGTATTCTAGGCGTAAGAAATAGAGTGTGGGGGTGTGGGCATGTGCATGTTGTTGCTTGTGGGAAGTGTCATTGTAAGTTGTTAGTATAAGTAGTCTGGGCGGGATTAGGAGAGGCCATTCTAATTCATTGCATTAGGTCATCTCTTTGAGATTGGAGAGTTAGGAGATCTCGAACTCCTTGTTTCTTGGTGTTTTGATAATAAAATGTGTAGATTCTACCAATTTTGATATTAGAGCGCTTGTTCGATTGAAAATTGACTGCAAAATTGGATCAACATCTGAAATCCGTTGTTAACTAGGATTTATTTCTTAATATCATTCTCGTGTTAATTCTGATAAAATGTGCTATTTTCCAGTATGTACCATGTGCAGAAGATTGTGTACTTGGAATCGTGGTCGACTCTAGAGCCGATGTAAGTGCTCCTTTATTACTGTTTGGAGTTCAAATTACATATGTTTATGCTTAATTACAAAATAATTGGCTACTGCTGTCTTTGATTGTTTTTCTTGGATGGTTTGACCGTTTGACCGGTGTCCATGTCCAATGAATTTTTTTTTCCAATTACCTTGTTAAGTTCATCTTATGACTCTTTTTTGACATTGTATGTAGAATTTTCTTGTTGACATAAAAGGTCCTTCATTAGCCTCTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGAGAAACATACCCAAATTTGAGGTGTGTATAGTTTTTTGTGCACGTGTTTTTGTTTTTGATATTATAACCTTTTGGTGTAGTTGCTCATCTATTTTCCTCTTTAGAAGTTTTATACTTTGTTAGTTCATTTATTATTCTGAGAGAAGGTTATTTATATGTTTTTTTTCTTCTTCCATTCGTTTTTGTGTGCTGGTGGGGGTGCAGGGGTGGTTAAATGTATTTTGTATAGTAGTAAAAGTGTTATCTTCTTGTCAACAAGAGCATAGATTAAGTGACTTGATGTATGACGTGTGATTAAAAAGTCATGAATTCAAATTCCCACTTTAGATGTTGTTGAATTTATTGGTTGATATAATTAAATTTGCCTTCATTTATAAGCTTAAGCTCTAACATGATTCAAGATGGTATCAAAGCAGGAAACCTTGTGTTTGAATTCCTGCCAAGTCGTCGTTTCATCTCCATTTAATATTGATTTCTACTCAATGGACATTCTAATATTTTCAACATATTGGTTGATATAATTAAATTTATCATAACCCATTAGCTTGGGCTTTTGGTTTATGGGTGATTGTATGATTCGACATAATTCATGAAAAGAGTTGTATTCTCTTACCCTTTTTTAATTTGGCCCTTTTTTTGCAATTTACATATTCAGTTGAAGTTGGCACGTTTCACTTTCACATTCTTAATTTTTCCCTGTTGATTCCCTTCTTTGTAGATGGGTGCACTGCTTTATGTGCGGGTAGTAAAGGTAAACCCCGGTATGAATCCCGAGTTGGCCTGCACTGATGGTTAGTTAACTCATTCCTACCTCAGCATCCAATAAATTGATCAAAGGTTAAAATACTTAATCAAAGTAATATATTGATGTTGCTGTGTACTCATCCTCTGAAGAGTGCTGGCAAGGCCAGAACACTTTATGCAAGTTAATGTTTCTTTTCATTTTTTGGTTGTTGTGATTGATATGAAGTATGTCTCATATGAAAATCATTTTTTGGTTGTTATAGCCAATGGGAAAGCAGCTGGATTTGGCCTCCTCAAGGATGGTTACATGTTTGAATGTTCTACTGGGTTATCAAGAGTGTAAGCTAAATTGCTTTTCTCAATTACTCTCCTTTTCCTTTTTTTTTTTTGAAAATCAGGAAATCGGAGCTTCACTCCCCTATACCCGGAGTACCACTGGTCCGTCCCTAGACTATGGCATCAGGATACTTCGAAGAGTATTCTAGTTTAATCGCTTTGAGCGGCTTCGAACTAGAGATCTCTTAAGAAAACATGTCTTGAGTTCTTAGTCTCAACTGTTGGACTGCTGTGGGGGACAATTACTCTCCTTTTCCCTTTAAGTTGCTCTCGTGATTATTCATTCACATTGTTCATTTTATCCTTTCTTCTAGGCTTGTAAGCTCGCCAACATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTTGAGACAGCAGTTGGTATAAATGGTCGTGTTTGGGTATATTTCTTCAATCCTTGTGTTTTTTTTTTTGTTAGACATAGTTAATTATTATTGTTTTTTTTAAAACTGGGAAATTGGAGCTTCGCTCCCTTATACCTGGGACACCACTGACCTGTCCCTAGACCGTGGCATCGGGATACCTTGAAGGGTATTCTAGAGCGTCTTCGAACGAAAGATCTCTAAAAAAAGCATGTCTTGAAATTCTTAGACATAATTAGTTATTATGTGTAATTGTCTTCCCATAATTCCTTCTAGCCCATATTAACTTTCACACATACAAGTATGACATCTTACAAGACTTGGAGACCGGGTGGTTTCCAAGGGGTGGCACAGTGGTTGAAGACTTGAGCTTTGAGGCTATACTTCCCTCAAAGTTCTAGGTTCGAGACTCAGCTGTGACATTACTCGATGTCTTCCGGTACCTGGCCTAGAGACGGGTGTGATTACCCTTGTTAGTCAAAAAAGACTTGGAGAGCGGGAGGGTGGGAGGGTTATGAGTTCGATCTATGGTAGTCATGTATGTAGTAGTTAATTTGATGAGAGTTATCTCGACATCAAATGTAGTCGGGGCAAACAATTGTCTCACATAAATAGTCAAAATGCGTGTAAGTTAGCATAGACATTTATTCATGACCATAAAAAAAATGCAGCATGGAAATATTTGGCATTTGGATCGATTATATGTCAATTAATTAGTTGAGCTATAATTTTTTAATTTTTTCCACAACTTTAACCGTTCTTTGAAATTTGAAGTTGCTGACGAATAGTGTTTCTAAACGTTGGCATCTCTATTTTCAGGTGAATGCTGATTCTCCGTCCTCGACCATTGTTGTTTCTAATGCGATAATGAGCTCTGAAACTCTGACTGGGGTCCAACAGAGAATCATGGTGGATAAACTCCTTCATAATTTAAAGCTGTCAAGTTAGTCCTGTAAACTTCAGGGTCATAATAGTTTGTTGTTAAATTACATTTTTAGTAATGTATCATTTAGTTTATGGGTTTTATGAAACAGTTAGTCAATTATTTTTTTCTCTCTAACCAAAAATGAATCTTTTTTCTTACGGATTCAATTATATTATCAACTCTCAAGTTGAA

mRNA sequence

GTTTCTTCCACTCCCAATTATTCCAATCGCCGACTTCATCAAGTGTACAAATTCTCATTTACTTTGCAGAAAGTTTTTGTATCTGTAACCATGGTTGAAAAATCTTCCAGTTCATCGTCTACTCTCGTCGATCAACCAGTTGTTCCTGGCGATGTGGTTCTTGACCTCTCAAACATGGCCAACGAGACCATCAGGCTTGTCGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTTGCCAAAGTTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTATGTACCATGTGCAGAAGATTGTGTACTTGGAATCGTGGTCGACTCTAGAGCCGATAATTTTCTTGTTGACATAAAAGGTCCTTCATTAGCCTCTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGAGAAACATACCCAAATTTGAGATGGGTGCACTGCTTTATGTGCGGGTAGTAAAGGTAAACCCCGGTATGAATCCCGAGTTGGCCTGCACTGATGCCAATGGGAAAGCAGCTGGATTTGGCCTCCTCAAGGATGGTTACATGTTTGAATGTTCTACTGGGTTATCAAGAGTGCTTGTAAGCTCGCCAACATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTTGAGACAGCAGTTGGTATAAATGGTCGTGTTTGGGTGAATGCTGATTCTCCGTCCTCGACCATTGTTGTTTCTAATGCGATAATGAGCTCTGAAACTCTGACTGGGGTCCAACAGAGAATCATGGTGGATAAACTCCTTCATAATTTAAAGCTGTCAAGTTAGTCCTGTAAACTTCAGGGTCATAATAGTTTGTTGTTAAATTACATTTTTAGTAATGTATCATTTAGTTTATGGGTTTTATGAAACAGTTAGTCAATTATTTTTTTCTCTCTAACCAAAAATGAATCTTTTTTCTTACGGATTCAATTATATTATCAACTCTCAAGTTGAA

Coding sequence (CDS)

ATGGTTGAAAAATCTTCCAGTTCATCGTCTACTCTCGTCGATCAACCAGTTGTTCCTGGCGATGTGGTTCTTGACCTCTCAAACATGGCCAACGAGACCATCAGGCTTGTCGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTTGCCAAAGTTGGAAAACTGAGGTTCTCGAAACCAAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTATGTACCATGTGCAGAAGATTGTGTACTTGGAATCGTGGTCGACTCTAGAGCCGATAATTTTCTTGTTGACATAAAAGGTCCTTCATTAGCCTCTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGGAGAAACATACCCAAATTTGAGATGGGTGCACTGCTTTATGTGCGGGTAGTAAAGGTAAACCCCGGTATGAATCCCGAGTTGGCCTGCACTGATGCCAATGGGAAAGCAGCTGGATTTGGCCTCCTCAAGGATGGTTACATGTTTGAATGTTCTACTGGGTTATCAAGAGTGCTTGTAAGCTCGCCAACATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTTGAGACAGCAGTTGGTATAAATGGTCGTGTTTGGGTGAATGCTGATTCTCCGTCCTCGACCATTGTTGTTTCTAATGCGATAATGAGCTCTGAAACTCTGACTGGGGTCCAACAGAGAATCATGGTGGATAAACTCCTTCATAATTTAAAGCTGTCAAGTTAG

Protein sequence

MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLKLSS

Homology

[Close]

BLAST of Sed0013198 vs. NCBI nr
Match: KAG6587472.1 (Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 456.8 bits (1174), Expect = 1.1e-124
Identity = 229/243 (94.24%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKP 60
           MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETI+L GGLRQDHDAISVAKVGKLRFSKP
Sbjct: 715 MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 774

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGPSLASLPVLAFEGGTRRNIPKF
Sbjct: 775 NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 834

Query: 121 EMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPV 180
           EMGALLYVRVVKVNPGMNPELACTDA+GKAAGFGLLKDGY+F+CSTGLSR+L+SSPTCPV
Sbjct: 835 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPV 894

Query: 181 LESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLK 240
           LESLGKKLSFETAVGINGRVWVNADSPS+TIVVSNAIM+SETL+GVQQRIMVDKLL+NLK
Sbjct: 895 LESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLK 954

Query: 241 LSS 244
           LSS
Sbjct: 955 LSS 957

[Close]

BLAST of Sed0013198 vs. NCBI nr
Match: XP_022925902.1 (putative exosome complex component rrp40 [Cucurbita moschata] >XP_023531464.1 putative exosome complex component rrp40 [Cucurbita pepo subsp. pepo] >KAG7021460.1 putative exosome complex component rrp40 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 456.8 bits (1174), Expect = 1.1e-124
Identity = 229/243 (94.24%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKP 60
           MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETI+L GGLRQDHDAISVAKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGPSLASLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPV 180
           EMGALLYVRVVKVNPGMNPELACTDA+GKAAGFGLLKDGY+F+CSTGLSR+L+SSPTCPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLK 240
           LESLGKKLSFETAVGINGRVWVNADSPS+TIVVSNAIM+SETL+GVQQRIMVDKLL+NLK
Sbjct: 181 LESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Sed0013198 vs. NCBI nr
Match: KAG6589448.1 (Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 453.4 bits (1165), Expect = 1.3e-123
Identity = 226/243 (93.00%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1    MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKP 60
            MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETI+L GGLRQDHDAISV+KVGKLRFSKP
Sbjct: 786  MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 845

Query: 61   NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120
            NKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGP+LA LPVLAFEGGTRRNIPKF
Sbjct: 846  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 905

Query: 121  EMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPV 180
            EMGALLYVRVVK NPGMNPELACTDA+GKAAGFGLLKDGYMFECSTGLSR+L+SSPTCPV
Sbjct: 906  EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 965

Query: 181  LESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLK 240
            LES GKKLSFETAVG+NGRVWVNADSPS+TIVVSNAI++SETL+GVQQRIMVDKLL+NLK
Sbjct: 966  LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 1025

Query: 241  LSS 244
            LSS
Sbjct: 1026 LSS 1028

[Close]

BLAST of Sed0013198 vs. NCBI nr
Match: KAG7023129.1 (putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 453.4 bits (1165), Expect = 1.3e-123
Identity = 226/243 (93.00%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKP 60
           MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETI+L GGLRQDHDAISV+KVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGP+LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDA+GKAAGFGLLKDGYMFECSTGLSR+L+SSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLK 240
           LES GKKLSFETAVG+NGRVWVNADSPS+TIVVSNAI++SETL+GVQQRIMVDKLL+NLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Sed0013198 vs. NCBI nr
Match: XP_022921727.1 (putative exosome complex component rrp40 [Cucurbita moschata])

HSP 1 Score: 452.6 bits (1163), Expect = 2.2e-123
Identity = 225/243 (92.59%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKP 60
           MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANET++L GGLRQDHDAISV+KVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGP+LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDA+GKAAGFGLLKDGYMFECSTGLSR+L+SSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLK 240
           LES GKKLSFETAVG+NGRVWVNADSPS+TIVVSNAI++SETL+GVQQRIMVDKLL+NLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Sed0013198 vs. ExPASy Swiss-Prot
Match: Q7KWX9 (Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN=exosc3 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.4e-45
Identity = 97/212 (45.75%), Postives = 131/212 (61.79%), Query Frame = 0


Query: 11  TLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNK-YWVESSQ 70
           TL DQ VVPGDV+  + ++    +R+  GL Q  D +   K G LR+SK ++ YW+E+ Q
Sbjct: 3   TLKDQFVVPGDVIGKIGDL---KVRIGPGLLQTKDTVLATKAGVLRYSKFHRFYWIENEQ 62

Query: 71  KRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVR 130
           KRYVP  ED V+G +++  A++F VDI     A L   +FEG T+ N P   +G L+Y R
Sbjct: 63  KRYVPQVEDMVIGTIIEKHAESFKVDIGSSCSALLSAYSFEGATKSNKPLLNVGNLIYCR 122

Query: 131 VVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLS 190
           V   N  M PE+ C     KA GFG L  GYM  CS GLS  L+S   C +L+ LGK + 
Sbjct: 123 VTVANRDMEPEVVCLSQKQKAEGFGQLIGGYMLNCSLGLSHYLLSE-DCFLLQILGKHIP 182

Query: 191 FETAVGINGRVWVNADSPSSTIVVSNAIMSSE 222
           +E AVG+NGRVW+N+ S  +TIVVSN I +S+
Sbjct: 183 YEIAVGVNGRVWINSGSNHNTIVVSNTIYNSQ 210

[Close]

BLAST of Sed0013198 vs. ExPASy Swiss-Prot
Match: Q8IPX7 (Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.5e-39
Identity = 87/234 (37.18%), Postives = 139/234 (59.40%), Query Frame = 0


Query: 7   SSSSTLVDQPVVPGDVVLDLSNMANETIRLVG-GLRQDHDAISVAKVGKLRFSKPNKYWV 66
           S++ST+    V+PG+ +  +  +A     ++G GLR+  D +  +K G LR  +P  +WV
Sbjct: 2   SATSTI----VMPGERIAAIEELAKSKRVILGPGLRRLDDTVVASKAGPLRHKEPGTFWV 61

Query: 67  ESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGAL 126
           ++ Q+RY+P   D +LGIV     D + VDI     AS+  LAFE  +++N P    G L
Sbjct: 62  DNYQRRYIPARGDLILGIVRAKAGDLYRVDIGATDTASISYLAFEAASKKNRPDLIPGDL 121

Query: 127 LYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLG 186
           +Y RV+  +  + PEL C ++ GK+   G+L DG+ F+CS  L R+L+    CPVL +L 
Sbjct: 122 IYARVLNASADIEPELVCVNSVGKSGKLGVLTDGFFFKCSLNLGRMLLRE-NCPVLAALT 181

Query: 187 KKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNL 240
           ++L +E AVG+NGR+W+ A S   T+ ++NAI + E  +G  +   +DK+  NL
Sbjct: 182 RELPYEIAVGVNGRIWLKAHSLKETVALANAISALEQ-SGCAE---IDKICGNL 226

[Close]

BLAST of Sed0013198 vs. ExPASy Swiss-Prot
Match: Q7TQK4 (Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3)

HSP 1 Score: 159.5 bits (402), Expect = 4.9e-38
Identity = 88/224 (39.29%), Postives = 134/224 (59.82%), Query Frame = 0


Query: 20  GDVVLDLSNMANETIRLV--GGLRQDHDAISVAKVGKLRFSKPN-----KYWVESSQKRY 79
           G+  L L+  A   +R+V   GLR+  D + V K G+LR  +P+      YWV+S QKRY
Sbjct: 49  GEQPLRLNAGARPRLRVVCGPGLRRCGDRLLVTKCGRLRHKEPSGGGGGVYWVDSQQKRY 108

Query: 80  VPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRVVK 139
           VP   D V+GIV+    D F VD+ G   ASL  LAFEG T+RN P  ++G L+Y + V 
Sbjct: 109 VPVKGDHVIGIVIAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDLIYGQCVV 168

Query: 140 VNPGMNPELACTDANGKAAGFGLL-KDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFE 199
            N  M PE+ C D+ G+A G G++ +DG +F+ + GL R L+ +P C +++ LGK    E
Sbjct: 169 ANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIVQELGKLYPLE 228

Query: 200 TAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKL 236
              G+NGR+WV A +   T++++N + + E +T  Q++ +  +L
Sbjct: 229 IVFGMNGRIWVKAKTIQQTLILANVLEACEHMTTEQRKQIFARL 271

[Close]

BLAST of Sed0013198 vs. ExPASy Swiss-Prot
Match: Q3T0E1 (Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.4e-38
Identity = 90/231 (38.96%), Postives = 133/231 (57.58%), Query Frame = 0


Query: 14  DQPVVPGDVVLDLSNMANETIRLV--GGLRQDHDAISVAKVGKLRFSKPNK------YWV 73
           D P   G+  L L+  A    R+V   GLR+  D + V K G+LR  +P        YWV
Sbjct: 43  DGPGGAGERPLRLNAAARSRGRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWV 102

Query: 74  ESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGAL 133
           +S QKRYVP   D V+GIV     D F VD+ G   ASL  LAFEG T+RN P  ++G L
Sbjct: 103 DSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLAFEGATKRNRPNVQVGDL 162

Query: 134 LYVRVVKVNPGMNPELACTDANGKAAGFGLL-KDGYMFECSTGLSRVLVSSPTCPVLESL 193
           +Y + V  N  M PE+ C D+ G+A G G++ +DG +F+ + GL R L+ +P C +L+ +
Sbjct: 163 IYGQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEILQEV 222

Query: 194 GKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKL 236
           GK    E   G+NGR+WV A +   T++++N + + E +T  Q++ +  +L
Sbjct: 223 GKLYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTADQRKQIFSRL 272

[Close]

BLAST of Sed0013198 vs. ExPASy Swiss-Prot
Match: Q9NQT5 (Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3)

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-37
Identity = 88/229 (38.43%), Postives = 133/229 (58.08%), Query Frame = 0


Query: 19  PGDVV---LDLSNMANETIRLV--GGLRQDHDAISVAKVGKLRFSKPNK------YWVES 78
           PG  V   L L+  A   +R+V   GLR+  D + V K G+LR  +P        YWV+S
Sbjct: 45  PGGAVERPLSLNARACSRVRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGGGVYWVDS 104

Query: 79  SQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLY 138
            QKRYVP   D V+GIV     D F VD+ G   ASL  L+FEG T+RN P  ++G L+Y
Sbjct: 105 QQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIY 164

Query: 139 VRVVKVNPGMNPELACTDANGKAAGFGLL-KDGYMFECSTGLSRVLVSSPTCPVLESLGK 198
            + V  N  M PE+ C D+ G+A G G++ +DG +F+ + GL R L+ +P C +++ +GK
Sbjct: 165 GQFVVANKDMEPEMVCIDSCGRANGMGVIGQDGLLFKVTLGLIRKLL-APDCEIIQEVGK 224

Query: 199 KLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKL 236
               E   G+NGR+WV A +   T++++N + + E +T  Q++ +  +L
Sbjct: 225 LYPLEIVFGMNGRIWVKAKTIQQTLILANILEACEHMTSDQRKQIFSRL 272

[Close]

BLAST of Sed0013198 vs. ExPASy TrEMBL
Match: A0A6J1ECW1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111433176 PE=3 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 5.5e-125
Identity = 229/243 (94.24%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKP 60
           MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETI+L GGLRQDHDAISVAKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGPSLASLPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPV 180
           EMGALLYVRVVKVNPGMNPELACTDA+GKAAGFGLLKDGY+F+CSTGLSR+L+SSPTCPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLK 240
           LESLGKKLSFETAVGINGRVWVNADSPS+TIVVSNAIM+SETL+GVQQRIMVDKLL+NLK
Sbjct: 181 LESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Sed0013198 vs. ExPASy TrEMBL
Match: A0A6J1E1A1 (Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC111429887 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.0e-123
Identity = 225/243 (92.59%), Postives = 238/243 (97.94%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKP 60
           MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANET++L GGLRQDHDAISV+KVGKLRFSKP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETLKLGGGLRQDHDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIVVDSRADNFLVDIKGP+LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDA+GKAAGFGLLKDGYMFECSTGLSR+L+SSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLK 240
           LES GKKLSFETAVG+NGRVWVNADSPS+TIVVSNAI++SETL+GVQQRIMVDKLL+NLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNAILNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Sed0013198 vs. ExPASy TrEMBL
Match: A0A6J1I8H3 (Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111471933 PE=3 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 5.2e-123
Identity = 226/243 (93.00%), Postives = 237/243 (97.53%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKP 60
           MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETI+L GGLRQDHDAISVAKVGKLRFSKP
Sbjct: 1   MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIVVDSR+DNFLVDIKGPSLA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDA+GKAAGFG LKDGY+F+CSTGLSR+L+SSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGHLKDGYIFDCSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLK 240
           LESLGKKLSFETAVGINGRVWVNADSPS+TIVVSNAIM+SETL+GVQQRIMVDKLL+NLK
Sbjct: 181 LESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Sed0013198 vs. ExPASy TrEMBL
Match: A0A6J1JLH7 (Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111485670 PE=3 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.6e-122
Identity = 222/243 (91.36%), Postives = 237/243 (97.53%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKP 60
           MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETI+L GGLRQDHDAISV+KVGKLRF+KP
Sbjct: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDHDAISVSKVGKLRFTKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGP+LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPV 180
           EMGALLYVRVVK NPGMNPELACTDA+GKAAGFGLLKDGYMFECSTGLSR+L+SSPTCPV
Sbjct: 121 EMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPV 180

Query: 181 LESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLK 240
           LES GKKLSFETAVG+NGRVWVNADSPS+TIVVSNA+++SETL+GVQQRIMVD LL+NLK
Sbjct: 181 LESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNALLNSETLSGVQQRIMVDMLLNNLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Sed0013198 vs. ExPASy TrEMBL
Match: A0A0A0LP58 (Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 PE=3 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 2.6e-122
Identity = 225/243 (92.59%), Postives = 237/243 (97.53%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKP 60
           MVEK SSSSSTLVDQPVVPGDVVLDLSNMANETI+L GGLRQD DAISV+KVGKLRFSKP
Sbjct: 1   MVEKPSSSSSTLVDQPVVPGDVVLDLSNMANETIKLGGGLRQDQDAISVSKVGKLRFSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120
           NKYWVESSQKRYVPCAEDCVLGIV+DSRADNFLVDIKGPSLA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWVESSQKRYVPCAEDCVLGIVLDSRADNFLVDIKGPSLAFLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPV 180
           EMGALLYVRVVKVNPGMNPELACTDA+GKAAGFGLLKDGYMFECSTGLSR+L+SSP+CPV
Sbjct: 121 EMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPSCPV 180

Query: 181 LESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNLK 240
           LESLGKKLSFETAVG+NGRVWVNADSPS+ IVVSNAI++SETL+GVQQRIMVDKLL NLK
Sbjct: 181 LESLGKKLSFETAVGLNGRVWVNADSPSTIIVVSNAILNSETLSGVQQRIMVDKLLANLK 240

Query: 241 LSS 244
           LSS
Sbjct: 241 LSS 243

[Close]

BLAST of Sed0013198 vs. TAIR 10
Match: AT2G25355.1 (PNAS-3 related )

HSP 1 Score: 339.7 bits (870), Expect = 1.9e-93
Identity = 165/234 (70.51%), Postives = 196/234 (83.76%), Query Frame = 0


Query: 6   SSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWV 65
           S+S ++L+DQ VVPGDVVLDLSNM N+TI+L  GLRQD++ ISV + GKLR+SKPNKYWV
Sbjct: 6   STSPTSLIDQTVVPGDVVLDLSNMTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWV 65

Query: 66  ESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGAL 125
           ESS KRYVP  ED VLGIVVD + +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  L
Sbjct: 66  ESSHKRYVPRPEDHVLGIVVDCKGENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTL 125

Query: 126 LYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLG 185
           LY RVVK N GMNPEL+C D +GKAAGFG LKDG+MFE STGLSR+L+SSPTCPVLE+LG
Sbjct: 126 LYTRVVKTNTGMNPELSCVDESGKAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALG 185

Query: 186 KKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLLHNL 240
           KKLSFETA G+NGR WV+A +P   I+V+NA+M+SETL+G QQRIMV+KLL  +
Sbjct: 186 KKLSFETAFGLNGRCWVHAAAPRIVIIVANALMNSETLSGTQQRIMVEKLLEKI 239

[Close]

BLAST of Sed0013198 vs. TAIR 10
Match: AT4G32175.1 (PNAS-3 related )

HSP 1 Score: 339.7 bits (870), Expect = 1.9e-93
Identity = 170/236 (72.03%), Postives = 202/236 (85.59%), Query Frame = 0


Query: 1   MVEKSSSSSSTLVDQPVVPGDVVLDLSNMANETIRLVGGLRQDHDAISVAKVGKLRFSKP 60
           M  K S S ++L++Q VVPGDVVLDLSNM N+TI+L  GL QD+DAIS  + GKL +SKP
Sbjct: 1   MAAKVSVSPTSLLNQIVVPGDVVLDLSNMNNQTIKLGSGLLQDNDAISAMRAGKLSYSKP 60

Query: 61  NKYWVESSQKRYVPCAEDCVLGIVVDSRADNFLVDIKGPSLASLPVLAFEGGTRRNIPKF 120
           NKYW+ESS KRY+P  +D VLGIVVDSRADNF VDIKGP LA LPVLAFEGGTRRNIPKF
Sbjct: 61  NKYWLESSHKRYIPRPDDHVLGIVVDSRADNFWVDIKGPQLALLPVLAFEGGTRRNIPKF 120

Query: 121 EMGALLYVRVVKVNPGMNPELACTDANGKAAGFGLLKDGYMFECSTGLSRVLVSSPTCPV 180
           E+G LLY+RVVK N GMNPEL+CT+A+GKAA FG L+DG+MFE STGLSR+L++SPT PV
Sbjct: 121 EVGTLLYLRVVKTNIGMNPELSCTEASGKAALFGPLRDGFMFETSTGLSRMLLNSPTRPV 180

Query: 181 LESLGKKLSFETAVGINGRVWVNADSPSSTIVVSNAIMSSETLTGVQQRIMVDKLL 237
           +E+LGKKLSFE AVG+NGRVWVNA +P   I+V+NAIM+SE+L+G QQRIMV+KLL
Sbjct: 181 IEALGKKLSFEIAVGLNGRVWVNATAPRIVIIVANAIMNSESLSGTQQRIMVEKLL 236

[Close]

BLAST of Sed0013198 vs. TAIR 10
Match: AT2G25355.2 (PNAS-3 related )

HSP 1 Score: 308.1 bits (788), Expect = 6.1e-84
Identity = 148/211 (70.14%), Postives = 175/211 (82.94%), Query Frame = 0


Query: 29  MANETIRLVGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSR 88
           M N+TI+L  GLRQD++ ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIVVD +
Sbjct: 1   MTNQTIKLGSGLRQDNEVISVMRAGKLRYSKPNKYWVESSHKRYVPRPEDHVLGIVVDCK 60

Query: 89  ADNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDANG 148
            +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  LLY RVVK N GMNPEL+C D +G
Sbjct: 61  GENYWIDIKGPQLALLPVLAFEGANRRNYPKFEVSTLLYTRVVKTNTGMNPELSCVDESG 120

Query: 149 KAAGFGLLKDGYMFECSTGLSRVLVSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPS 208
           KAAGFG LKDG+MFE STGLSR+L+SSPTCPVLE+LGKKLSFETA G+NGR WV+A +P 
Sbjct: 121 KAAGFGPLKDGFMFETSTGLSRMLLSSPTCPVLEALGKKLSFETAFGLNGRCWVHAAAPR 180

Query: 209 STIVVSNAIMSSETLTGVQQRIMVDKLLHNL 240
             I+V+NA+M+SETL+G QQRIMV+KLL  +
Sbjct: 181 IVIIVANALMNSETLSGTQQRIMVEKLLEKI 211

The following BLAST results are available for this feature:

BLAST of Sed0013198 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587472.1	1.1e-124	94.24	Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022925902.1	1.1e-124	94.24	putative exosome complex component rrp40 [Cucurbita moschata] >XP_023531464.1 pu...	[more]
KAG6589448.1	1.3e-123	93.00	Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. so...	[more]
KAG7023129.1	1.3e-123	93.00	putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp....	[more]
XP_022921727.1	2.2e-123	92.59	putative exosome complex component rrp40 [Cucurbita moschata]	[more]

BLAST of Sed0013198 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7KWX9	2.4e-45	45.75	Putative exosome complex component rrp40 OS=Dictyostelium discoideum OX=44689 GN...	[more]
Q8IPX7	4.5e-39	37.18	Exosome complex component RRP40 OS=Drosophila melanogaster OX=7227 GN=Rrp40 PE=1...	[more]
Q7TQK4	4.9e-38	39.29	Exosome complex component RRP40 OS=Mus musculus OX=10090 GN=Exosc3 PE=1 SV=3	[more]
Q3T0E1	8.4e-38	38.96	Exosome complex component RRP40 OS=Bos taurus OX=9913 GN=EXOSC3 PE=2 SV=1	[more]
Q9NQT5	1.9e-37	38.43	Exosome complex component RRP40 OS=Homo sapiens OX=9606 GN=EXOSC3 PE=1 SV=3	[more]

BLAST of Sed0013198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ECW1	5.5e-125	94.24	Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC11143317...	[more]
A0A6J1E1A1	1.0e-123	92.59	Ribosomal RNA-processing protein 40 OS=Cucurbita moschata OX=3662 GN=LOC11142988...	[more]
A0A6J1I8H3	5.2e-123	93.00	Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111471933 ...	[more]
A0A6J1JLH7	2.6e-122	91.36	Ribosomal RNA-processing protein 40 OS=Cucurbita maxima OX=3661 GN=LOC111485670 ...	[more]
A0A0A0LP58	2.6e-122	92.59	Ribosomal RNA-processing protein 40 OS=Cucumis sativus OX=3659 GN=Csa_1G004950 P...	[more]

BLAST of Sed0013198 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25355.1	1.9e-93	70.51	PNAS-3 related	[more]
AT4G32175.1	1.9e-93	72.03	PNAS-3 related	[more]
AT2G25355.2	6.1e-84	70.14	PNAS-3 related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 78..154 e-value: 6.1E-25 score: 88.7
None	No IPR available	GENE3D	2.40.50.100		coord: 7..73 e-value: 2.8E-12 score: 48.6
None	No IPR available	PANTHER	PTHR21321:SF1	EXOSOME COMPLEX COMPONENT RRP40	coord: 11..237
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 9..70
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 159..207 e-value: 1.1E-15 score: 57.7
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 155..238 e-value: 9.8E-27 score: 94.4
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 158..239
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 11..237
IPR037319	Rrp40, S1 domain	CDD	cd05790	S1_Rrp40	coord: 71..156 e-value: 1.80286E-38 score: 127.376
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 70..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013198.1	Sed0013198.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071034	CUT catabolic process
biological_process	GO:0043928	exonucleolytic catabolism of deadenylated mRNA
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding