Sed0013108 (gene) Chayote v1

Overview


Name	Sed0013108
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box protein SKIP8
Location	LG07: 12065424 .. 12069068 (-)
RNA-Seq Expression	Sed0013108
Synteny	Sed0013108

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCACGGGTCTACTCACTCACCCAAAACCTCCACCTCCTCCTTCAGCCTTTTCCGCACAAATTCCGATTCCATCACCGGAGATCACTTCACCGCCGCCAGTCTCCGGCGCCGGCCAAGCCATTCCGCCTTCAAATCTCCATATCCGACCGTCGATTCTTCCCTCTCGCTTCTCCTCACGGCGACGGCGTGTTTCTCTCACCTTCCGCTCAACAACGCCCCAGATTTCCTAGGGTTTCATGTTCTGCGAGGCTCAACGTCACACGCAGGCTTTCATGTCGTTTGAATGGAGATTTCCTCCGCTTCCACCGTTTCCCTGCCGCCCCAACCCTCTCCTATAGCCGCGATTGTCACTTTTCTTTGTTCTCTTCTCGCCGTTTTCGCCGCCGTTCGATTGGTTTATGTTCCTTTGATCAAGAGGACAAAACCGCCACAATCGGAGGGTTTCGGTGCCAGAAATTGTAACTGCGGCGGTTTTGGGGGTTTGGACCCCGGGACTGAGGTTTCTTCTTCGATCACTGCGAGTATGCCTTATTTGAACGGCCGTGTTACGGAAGTGTTGGAGAAGGCGCCGGTGGTTGTGAATGAGCGGCTGACCGGCGCCTCCATGATGGAGCAGTTGGTGCCGGAGATTACTACGCACGCTCTTAGTTACCTGGATTATCCCAGCCTGTGCCGTTTGTCCATGACTAATTCGTTGATGCGCAAGGCTGCAAATGATGATAATGCCTGGAAAGCGCTTTATCATAAGGTACAACTTAGGTTTCAAATCTTCTTTTGTTGAATTTTCGCATAAACTCCACATTTTCTGAATTACGCCATTGTTGAATTGACTGTATTTTTAAGCAATGAAATGGTTTCAGTTTTGTGGCCACATTTCTTGGATTGGCTGGAGCTATGAGCTATGTCTGTTCTTGGTTTTGAGTATTGATGTTTAAATCTATTTAGGATTCTTGGGGCTGAAATAAATTTTGTCTATGAAATCTTTTAGGACTTCACATTGGAGCAGGATACTGTAACTCCAGTAAACGGGTGGAAGGCTTACTATGCTGCAACAAGAACAATTATGAACATCAATTCCCAATTCTATAACATCATCCGAGAGAGGTCTCTTCAAGGGATGAGTGATTTTTGGTTGAATGCAGATTATGTGAAGTGTATTCACGCCTCGGGAGAATTCTTTTCCGGGTATTGCTTTATTGTCTTTTTCTGTTTGAGTTTAGCTTGAAATCTGACTGCTGCTTCATACAGCCGATGAAATTAGCAAACTGGTTTGGCATTTTTATTTTTAGTTCAAGTGTTCAACAACAACTGAGGGTGGGGGATAACTCGTTTGACATTGTTTATTTTAAGAGGATCCCTTTTGTTGTCTCACTCGTCAGATCTTTATCTATTATAAAGGAGAAGATTGTGATGTAACTTGTAAGGCGTTATTAAAAACGACACCGAGTCTTATGATTACTGTCATAGGGGTGTTGATAACTGCTTGTTTTTTTAGTTTTCGAAAGTTAAGCTTATAAACACTATTTTTTATGTATGACTTTTTTTGTTTTGTCACTTTCTAAAAGTTTTTTCAAAGTAACAAGAGTAATAGTTAAGTGACATAACCATTATGGGGTGGCCTAGTGGTTAAGAGGGCCTTGGAAAACTAAGAGGTGATAGGTTCAATCCATGGTGGCCATCCACCTAGGAATCAATATTTTAAAAAACGCAAGGCGCACTAAGGCGCAATGGCCCTCTGGAGCCTGAGGCGCAAGGCGCACCAAAAGGTGAAGGCTTTTTTACATAAGGCTCACTATATAAAAAAAAACACAAAAAATATGTGTGTGTATACACAATAAAAACATTTCCATAGATATAAATGAAGTTTTAACCAAGAATAATGTATAAAACATACGTTACATTTAACTATTAACCTTCATTCATGAATAGAAATGAAGTTTAACAAAGAATCTATATAAACATACATAAGATTCAACTATTAACCTTTCATTTTAAGCGAATGTTTGTCTTTGTGAGTTAAAAAATTAAGTTATTTAAGGCATTGAAATGTCTTGAATCAGTTATGTTGCGCTTCGAATGACTAGTACGAGGGTCTCTAAAAAATCCTAAGAAAACACAAAAGCCGACAAGGCGTGCGCCTTTTGGCGCCCGGGGCTTCATGTAAGGCGCCAAAAGGCGCACGCCTAATTAACCGCGCCTCGCTTTTCCCAAGCGAGGCGCTAAAGGTGCGGCTTGCGCCCAGACGCGCCTTTTAAAACACTGCTAGGAATTAATTTGAAATGATTTGCCTTGACATCCAAATGTTGTAGGGTTAGACGGGTTAGACGGTTGTCCCGTGACAATAGTCGAGGTGCGCGCTAGTTGGCCTAGACAATCACGGATATAAAAATAAAAGGATATAAAAATAAAAGAAGTAATAGTTCAGTCACTTAAGATTTATTTTTGTTTTTAGAATTTTGCTAAGAATCCAAACATTTGTGTATAGCATAGAAATTGAGGGAATGAGGACAATTTTCACAAAGCAGAAAGCTAAATCGAATCTATTATCAAGCGCAAGTTTTTCCCTATAGAACATTTGAGGAATGAGTACAATAATTTATTTGATGAATGAGTACAATAATCTATTTGAGAAATGAGTACAATAATTTATTAACCATGTCGAGACTGGATATAGACCTTGTGTTGTTTTCTTTTTGACAAAAAACAAAACTTTTGACCGAAGAAATGAAAATAAATGCTCAAACAATACAAACGTGGGTCAAAAGTATTAATTTCTAACATCAATTTAGGTTGGATGATATTTGATTTTGTTGACATGCCTGGAGGTGGTGGGGTGGACTTGTCAGGTTGCTATATCTATATGTAGGTGGTTTGATATAAATACTTTATTGAGATAGACAATTTATATATGTTATTTTATACAATGACTTTATGAATTTGAGTTAGACCTTTCGATGAAATTCACATAATTTGGCACTTACTATGCTCGTGTTTTCCTTCTACAGGTATAATGCAGTAATTCAAAATTGGCAGGTTGCCTTTAATTGGGAACCAGCGATTAATTTTCAGATCCGCGACGTACGGGCTCGTGTACTTACCGACATGGCTTGGGTTAGCATGAAAACCTATGTCGACATGGACATAGGGCCATTCAACGTGACTAACGTCTATGAGTTCCATGACGGTCGATGGTACATGGTGCATCATCATAGCTCTGTGATGATGGAACAACAAATGGTTCATGGGTAGAGAAAGAGAAGTAAACCATGAAACTATACATAACACTAGGTGGTACAAACATAGGTGGTGTGTGGTAGCAGAAGCAAGATTTCAATTTTTTTTCTTCTTTCTAGTCCATTACTTTTAATCAACATCAGTTAACTGTTCCAACCTAGTTTTGCCTAGGTTGTGATTGCTGCTCCCTTTTTCTTTCAATGTTTTGCTTGATCTAATCCATGGCGCTACTTGTCAAGATGTAGTAAGGTTAGACCGCTGTTTCGGTAGTCGAGGTGTGCAAAAGTTGATCTAAGCACTCCATTCTAATCCTCGAAATTAAGTAAATGATAGTTTTGCAAGTATTTTTTCTTAGTTTGGTTTATGCTCAAAATCAAATGGCTGCTGCTGCGTTTTTTTTTCCAAATAAA

mRNA sequence

TTCACGGGTCTACTCACTCACCCAAAACCTCCACCTCCTCCTTCAGCCTTTTCCGCACAAATTCCGATTCCATCACCGGAGATCACTTCACCGCCGCCAGTCTCCGGCGCCGGCCAAGCCATTCCGCCTTCAAATCTCCATATCCGACCGTCGATTCTTCCCTCTCGCTTCTCCTCACGGCGACGGCGTGTTTCTCTCACCTTCCGCTCAACAACGCCCCAGATTTCCTAGGGTTTCATGTTCTGCGAGGCTCAACGTCACACGCAGGCTTTCATGTCGTTTGAATGGAGATTTCCTCCGCTTCCACCGTTTCCCTGCCGCCCCAACCCTCTCCTATAGCCGCGATTGTCACTTTTCTTTGTTCTCTTCTCGCCGTTTTCGCCGCCGTTCGATTGGTTTATGTTCCTTTGATCAAGAGGACAAAACCGCCACAATCGGAGGGTTTCGGTGCCAGAAATTGTAACTGCGGCGGTTTTGGGGGTTTGGACCCCGGGACTGAGGTTTCTTCTTCGATCACTGCGAGTATGCCTTATTTGAACGGCCGTGTTACGGAAGTGTTGGAGAAGGCGCCGGTGGTTGTGAATGAGCGGCTGACCGGCGCCTCCATGATGGAGCAGTTGGTGCCGGAGATTACTACGCACGCTCTTAGTTACCTGGATTATCCCAGCCTGTGCCGTTTGTCCATGACTAATTCGTTGATGCGCAAGGCTGCAAATGATGATAATGCCTGGAAAGCGCTTTATCATAAGGACTTCACATTGGAGCAGGATACTGTAACTCCAGTAAACGGGTGGAAGGCTTACTATGCTGCAACAAGAACAATTATGAACATCAATTCCCAATTCTATAACATCATCCGAGAGAGGTCTCTTCAAGGGATGAGTGATTTTTGGTTGAATGCAGATTATGTGAAGTGTATTCACGCCTCGGGAGAATTCTTTTCCGGGTATAATGCAGTAATTCAAAATTGGCAGGTTGCCTTTAATTGGGAACCAGCGATTAATTTTCAGATCCGCGACGTACGGGCTCGTGTACTTACCGACATGGCTTGGGTTAGCATGAAAACCTATGTCGACATGGACATAGGGCCATTCAACGTGACTAACGTCTATGAGTTCCATGACGGTCGATGGTACATGGTGCATCATCATAGCTCTGTGATGATGGAACAACAAATGGTTCATGGGTAGAGAAAGAGAAGTAAACCATGAAACTATACATAACACTAGGTGGTACAAACATAGGTGGTGTGTGGTAGCAGAAGCAAGATTTCAATTTTTTTTCTTCTTTCTAGTCCATTACTTTTAATCAACATCAGTTAACTGTTCCAACCTAGTTTTGCCTAGGTTGTGATTGCTGCTCCCTTTTTCTTTCAATGTTTTGCTTGATCTAATCCATGGCGCTACTTGTCAAGATGTAGTAAGGTTAGACCGCTGTTTCGGTAGTCGAGGTGTGCAAAAGTTGATCTAAGCACTCCATTCTAATCCTCGAAATTAAGTAAATGATAGTTTTGCAAGTATTTTTTCTTAGTTTGGTTTATGCTCAAAATCAAATGGCTGCTGCTGCGTTTTTTTTTCCAAATAAA

Coding sequence (CDS)

ATGGAGATTTCCTCCGCTTCCACCGTTTCCCTGCCGCCCCAACCCTCTCCTATAGCCGCGATTGTCACTTTTCTTTGTTCTCTTCTCGCCGTTTTCGCCGCCGTTCGATTGGTTTATGTTCCTTTGATCAAGAGGACAAAACCGCCACAATCGGAGGGTTTCGGTGCCAGAAATTGTAACTGCGGCGGTTTTGGGGGTTTGGACCCCGGGACTGAGGTTTCTTCTTCGATCACTGCGAGTATGCCTTATTTGAACGGCCGTGTTACGGAAGTGTTGGAGAAGGCGCCGGTGGTTGTGAATGAGCGGCTGACCGGCGCCTCCATGATGGAGCAGTTGGTGCCGGAGATTACTACGCACGCTCTTAGTTACCTGGATTATCCCAGCCTGTGCCGTTTGTCCATGACTAATTCGTTGATGCGCAAGGCTGCAAATGATGATAATGCCTGGAAAGCGCTTTATCATAAGGACTTCACATTGGAGCAGGATACTGTAACTCCAGTAAACGGGTGGAAGGCTTACTATGCTGCAACAAGAACAATTATGAACATCAATTCCCAATTCTATAACATCATCCGAGAGAGGTCTCTTCAAGGGATGAGTGATTTTTGGTTGAATGCAGATTATGTGAAGTGTATTCACGCCTCGGGAGAATTCTTTTCCGGGTATAATGCAGTAATTCAAAATTGGCAGGTTGCCTTTAATTGGGAACCAGCGATTAATTTTCAGATCCGCGACGTACGGGCTCGTGTACTTACCGACATGGCTTGGGTTAGCATGAAAACCTATGTCGACATGGACATAGGGCCATTCAACGTGACTAACGTCTATGAGTTCCATGACGGTCGATGGTACATGGTGCATCATCATAGCTCTGTGATGATGGAACAACAAATGGTTCATGGGTAG

Protein sequence

MEISSASTVSLPPQPSPIAAIVTFLCSLLAVFAAVRLVYVPLIKRTKPPQSEGFGARNCNCGGFGGLDPGTEVSSSITASMPYLNGRVTEVLEKAPVVVNERLTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAYYAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNAVIQNWQVAFNWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWYMVHHHSSVMMEQQMVHG

Homology

[Close]

BLAST of Sed0013108 vs. NCBI nr
Match: KAA0044925.1 (F-box protein SKIP8 [Cucumis melo var. makuwa] >TYK16545.1 F-box protein SKIP8 [Cucumis melo var. makuwa])

HSP 1 Score: 514.6 bits (1324), Expect = 5.7e-142
Identity = 257/313 (82.11%), Postives = 273/313 (87.22%), Query Frame = 0


Query: 1   MEISSASTVSLPPQPSPIAAIVTFLCSLLAVFAAVRLVYVPLIKRTKPPQSEGFGARNCN 60
           MEI S++T++L  QP PIAAIVTFLC LLA+F AVRLV VP I+RTK  QSE  G RNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKSLQSESVGTRNCN 60

Query: 61  C-----GG--FGGLDPGTEVSSSITASMPYLNGRVTEVLEKAPVVVNERLTGASMMEQLV 120
           C     GG    GLDP  E++SS + SMPYLNGR  EVLEKAPVVV ER TGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTP+NGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNAVIQNWQVAF 240
           YAATRTIMNIN+QFYNIIR+RSLQ MS FWLNADYVKCIHASGEFFSGYNAVIQ+WQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWYMVHHHSSVM 300
           NWE  INFQ+RDVRARVLTDMAWVSMKTYVDMD GPFNVTN+YEFHDGRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHDGRWYMVHHHSSVM 300

Query: 301 -----MEQQMVHG 302
                MEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of Sed0013108 vs. NCBI nr
Match: XP_038880969.1 (F-box protein SKIP8-like [Benincasa hispida])

HSP 1 Score: 514.2 bits (1323), Expect = 7.5e-142
Identity = 257/313 (82.11%), Postives = 274/313 (87.54%), Query Frame = 0


Query: 1   MEISSASTVSLPPQPSPIAAIVTFLCSLLAVFAAVRLVYVPLIKRTKPPQSEGFGARNCN 60
           MEI S++T++L  QP PIAAIVTFLC LLA+FAAVRLV VP I+RTK  QS   G RNCN
Sbjct: 1   MEIISSATIALSSQPFPIAAIVTFLCFLLALFAAVRLVSVPYIRRTKALQSVALGTRNCN 60

Query: 61  C-----GG--FGGLDPGTEVSSSITASMPYLNGRVTEVLEKAPVVVNERLTGASMMEQLV 120
           C     GG   GGLDP  E++SS + SMPYLNGR  EVLEKAPVVV ER TGASMMEQLV
Sbjct: 61  CTCSLNGGVVIGGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTP+NGWKAY
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKAY 180

Query: 181 YAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNAVIQNWQVAF 240
           YAATRTIMNIN+QFYNIIR+RSLQ MS FWLNADYVKCIHASGEFFSGYNAVIQ+WQ+AF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVIQSWQLAF 240

Query: 241 NWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWYMVHHHSSVM 300
           NWE  INFQ+RDVRARVLTDMAWVSMKTYVDMD GPFNVTN+YEFH+GRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300

Query: 301 -----MEQQMVHG 302
                MEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of Sed0013108 vs. NCBI nr
Match: XP_008451931.1 (PREDICTED: F-box protein SKIP8 [Cucumis melo])

HSP 1 Score: 514.2 bits (1323), Expect = 7.5e-142
Identity = 256/313 (81.79%), Postives = 273/313 (87.22%), Query Frame = 0


Query: 1   MEISSASTVSLPPQPSPIAAIVTFLCSLLAVFAAVRLVYVPLIKRTKPPQSEGFGARNCN 60
           MEI S++T++L  QP PIAAI+TFLC LLA+F AVRLV VP I+RTK  QSE  G RNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIITFLCFLLAIFVAVRLVSVPYIRRTKSLQSESVGTRNCN 60

Query: 61  C-----GG--FGGLDPGTEVSSSITASMPYLNGRVTEVLEKAPVVVNERLTGASMMEQLV 120
           C     GG    GLDP  E++SS + SMPYLNGR  EVLEKAPVVV ER TGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTP+NGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNAVIQNWQVAF 240
           YAATRTIMNIN+QFYNIIR+RSLQ MS FWLNADYVKCIHASGEFFSGYNAVIQ+WQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWYMVHHHSSVM 300
           NWE  INFQ+RDVRARVLTDMAWVSMKTYVDMD GPFNVTN+YEFHDGRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHDGRWYMVHHHSSVM 300

Query: 301 -----MEQQMVHG 302
                MEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of Sed0013108 vs. NCBI nr
Match: XP_004149013.1 (F-box protein SKIP8 [Cucumis sativus] >KGN53419.1 hypothetical protein Csa_015225 [Cucumis sativus])

HSP 1 Score: 512.3 bits (1318), Expect = 2.8e-141
Identity = 255/313 (81.47%), Postives = 273/313 (87.22%), Query Frame = 0


Query: 1   MEISSASTVSLPPQPSPIAAIVTFLCSLLAVFAAVRLVYVPLIKRTKPPQSEGFGARNCN 60
           MEI S++T++L  QP PIAAIVTFLC LLA+F AVRLV VP I+RTK  QSE  G RNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60

Query: 61  C-----GG--FGGLDPGTEVSSSITASMPYLNGRVTEVLEKAPVVVNERLTGASMMEQLV 120
           C     GG    GLDP  E++SS + SMPYLNGR  EVLEKAPVVV ER TGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTP+NGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNAVIQNWQVAF 240
           YAATRTIMNIN+QFYNIIR+RSLQ MS FWLNADYVKCIHASGEFFSGYNAV+Q+WQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240

Query: 241 NWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWYMVHHHSSVM 300
           NWE  INFQ+RDVRARVLTDMAWVSMKTYVDMD GPFNVTN+YEFH+GRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300

Query: 301 -----MEQQMVHG 302
                MEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of Sed0013108 vs. NCBI nr
Match: XP_022931549.1 (F-box protein SKIP8-like [Cucurbita moschata] >XP_023553511.1 F-box protein SKIP8 [Cucurbita pepo subsp. pepo] >KAG6577135.1 F-box protein SKIP8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015131.1 F-box protein SKIP8 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 511.9 bits (1317), Expect = 3.7e-141
Identity = 257/313 (82.11%), Postives = 275/313 (87.86%), Query Frame = 0


Query: 1   MEISSASTVSLPPQPSPIAAIVTFLCSLLAVFAAVRLVYVPLIKRTKPPQSEGFGARNCN 60
           MEI+SA+T++L  QP PIAAIVTFLC LLA+FAAVRLV VP I+RTK  Q EG G RN N
Sbjct: 1   MEIASAATIALLSQPFPIAAIVTFLCFLLALFAAVRLVSVPYIRRTKTVQLEGVGTRNFN 60

Query: 61  C-----GG--FGGLDPGTEVSSSITASMPYLNGRVTEVLEKAPVVVNERLTGASMMEQLV 120
           C     GG   GGL+P  E++SS + SMPYLNGR  EVLEKAPVVV ER TGASMMEQLV
Sbjct: 61  CTCSLNGGVAIGGLNPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDD+AWKALYHKDFTLEQDTVTP+NGWKAY
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDSAWKALYHKDFTLEQDTVTPINGWKAY 180

Query: 181 YAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNAVIQNWQVAF 240
           YAATRTIMNIN+QFYNIIR+RSLQ MS FWLNADYVKCIHASGEFFSGYNAVIQ+WQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWYMVHHHSSVM 300
           NWE  INFQ+RDVRARVLTDMAWVSMKTYVDMD GPFNVTN+YEFH+GRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300

Query: 301 -----MEQQMVHG 302
                MEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of Sed0013108 vs. ExPASy Swiss-Prot
Match: Q93YV9 (F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.9e-88
Identity = 147/197 (74.62%), Postives = 174/197 (88.32%), Query Frame = 0


Query: 105 GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTV 164
           G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD +
Sbjct: 33  GVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDGI 92

Query: 165 TPVNGWKAYYAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNA 224
           TPVNGWK YYA TR I+++N++F+ IIR+R+LQ M+  WLN+DYVKCIHASGE FSGYN 
Sbjct: 93  TPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNE 152

Query: 225 VIQNWQVAFNWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWY 284
           VIQ+WQ+ FNWE   +FQ+  VR R+LTDMAWV+MK Y+++D GPF +TNV+EFH+GRW+
Sbjct: 153 VIQSWQLCFNWEQGFDFQVHTVRTRILTDMAWVTMKAYLNVDGGPFLITNVFEFHNGRWH 212

Query: 285 MVHHHSSVMM--EQQMV 300
           MVHHHSSVM+  +QQ+V
Sbjct: 213 MVHHHSSVMLIDDQQVV 229

[Close]

BLAST of Sed0013108 vs. ExPASy Swiss-Prot
Match: Q9T0B0 (Probable F-box protein At4g23960 OS=Arabidopsis thaliana OX=3702 GN=At4g23960 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.3e-35
Identity = 67/115 (58.26%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 108 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPV 167
           M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++FT E +  TPV
Sbjct: 1   MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query: 168 NGWKAYYAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGY 223
           NGWKA++A T+ +M +N +F++I+  RSL  M+  WLN+DYVKC + SGE F+GY
Sbjct: 61  NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115

[Close]

BLAST of Sed0013108 vs. ExPASy TrEMBL
Match: A0A5A7TU63 (F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003610 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 2.8e-142
Identity = 257/313 (82.11%), Postives = 273/313 (87.22%), Query Frame = 0


Query: 1   MEISSASTVSLPPQPSPIAAIVTFLCSLLAVFAAVRLVYVPLIKRTKPPQSEGFGARNCN 60
           MEI S++T++L  QP PIAAIVTFLC LLA+F AVRLV VP I+RTK  QSE  G RNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKSLQSESVGTRNCN 60

Query: 61  C-----GG--FGGLDPGTEVSSSITASMPYLNGRVTEVLEKAPVVVNERLTGASMMEQLV 120
           C     GG    GLDP  E++SS + SMPYLNGR  EVLEKAPVVV ER TGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTP+NGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNAVIQNWQVAF 240
           YAATRTIMNIN+QFYNIIR+RSLQ MS FWLNADYVKCIHASGEFFSGYNAVIQ+WQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWYMVHHHSSVM 300
           NWE  INFQ+RDVRARVLTDMAWVSMKTYVDMD GPFNVTN+YEFHDGRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHDGRWYMVHHHSSVM 300

Query: 301 -----MEQQMVHG 302
                MEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of Sed0013108 vs. ExPASy TrEMBL
Match: A0A1S3BTF9 (F-box protein SKIP8 OS=Cucumis melo OX=3656 GN=LOC103493084 PE=4 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 3.6e-142
Identity = 256/313 (81.79%), Postives = 273/313 (87.22%), Query Frame = 0


Query: 1   MEISSASTVSLPPQPSPIAAIVTFLCSLLAVFAAVRLVYVPLIKRTKPPQSEGFGARNCN 60
           MEI S++T++L  QP PIAAI+TFLC LLA+F AVRLV VP I+RTK  QSE  G RNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIITFLCFLLAIFVAVRLVSVPYIRRTKSLQSESVGTRNCN 60

Query: 61  C-----GG--FGGLDPGTEVSSSITASMPYLNGRVTEVLEKAPVVVNERLTGASMMEQLV 120
           C     GG    GLDP  E++SS + SMPYLNGR  EVLEKAPVVV ER TGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTP+NGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNAVIQNWQVAF 240
           YAATRTIMNIN+QFYNIIR+RSLQ MS FWLNADYVKCIHASGEFFSGYNAVIQ+WQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWYMVHHHSSVM 300
           NWE  INFQ+RDVRARVLTDMAWVSMKTYVDMD GPFNVTN+YEFHDGRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHDGRWYMVHHHSSVM 300

Query: 301 -----MEQQMVHG 302
                MEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of Sed0013108 vs. ExPASy TrEMBL
Match: A0A0A0KX34 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G052690 PE=4 SV=1)

HSP 1 Score: 512.3 bits (1318), Expect = 1.4e-141
Identity = 255/313 (81.47%), Postives = 273/313 (87.22%), Query Frame = 0


Query: 1   MEISSASTVSLPPQPSPIAAIVTFLCSLLAVFAAVRLVYVPLIKRTKPPQSEGFGARNCN 60
           MEI S++T++L  QP PIAAIVTFLC LLA+F AVRLV VP I+RTK  QSE  G RNCN
Sbjct: 1   MEIVSSATIALSSQPFPIAAIVTFLCFLLAIFVAVRLVSVPYIRRTKTLQSESVGTRNCN 60

Query: 61  C-----GG--FGGLDPGTEVSSSITASMPYLNGRVTEVLEKAPVVVNERLTGASMMEQLV 120
           C     GG    GLDP  E++SS + SMPYLNGR  EVLEKAPVVV ER TGASMMEQLV
Sbjct: 61  CTCSLNGGVVIRGLDPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTP+NGWK+Y
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPINGWKSY 180

Query: 181 YAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNAVIQNWQVAF 240
           YAATRTIMNIN+QFYNIIR+RSLQ MS FWLNADYVKCIHASGEFFSGYNAV+Q+WQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSRFWLNADYVKCIHASGEFFSGYNAVVQSWQVAF 240

Query: 241 NWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWYMVHHHSSVM 300
           NWE  INFQ+RDVRARVLTDMAWVSMKTYVDMD GPFNVTN+YEFH+GRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300

Query: 301 -----MEQQMVHG 302
                MEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of Sed0013108 vs. ExPASy TrEMBL
Match: A0A6J1EUJ3 (F-box protein SKIP8-like OS=Cucurbita moschata OX=3662 GN=LOC111437693 PE=4 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 1.8e-141
Identity = 257/313 (82.11%), Postives = 275/313 (87.86%), Query Frame = 0


Query: 1   MEISSASTVSLPPQPSPIAAIVTFLCSLLAVFAAVRLVYVPLIKRTKPPQSEGFGARNCN 60
           MEI+SA+T++L  QP PIAAIVTFLC LLA+FAAVRLV VP I+RTK  Q EG G RN N
Sbjct: 1   MEIASAATIALLSQPFPIAAIVTFLCFLLALFAAVRLVSVPYIRRTKTVQLEGVGTRNFN 60

Query: 61  C-----GG--FGGLDPGTEVSSSITASMPYLNGRVTEVLEKAPVVVNERLTGASMMEQLV 120
           C     GG   GGL+P  E++SS + SMPYLNGR  EVLEKAPVVV ER TGASMMEQLV
Sbjct: 61  CTCSLNGGVAIGGLNPRAEITSSTSTSMPYLNGRAVEVLEKAPVVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDD+AWKALYHKDFTLEQDTVTP+NGWKAY
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDSAWKALYHKDFTLEQDTVTPINGWKAY 180

Query: 181 YAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNAVIQNWQVAF 240
           YAATRTIMNIN+QFYNIIR+RSLQ MS FWLNADYVKCIHASGEFFSGYNAVIQ+WQVAF
Sbjct: 181 YAATRTIMNINAQFYNIIRDRSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWYMVHHHSSVM 300
           NWE  INFQ+RDVRARVLTDMAWVSMKTYVDMD GPFNVTN+YEFH+GRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVM 300

Query: 301 -----MEQQMVHG 302
                MEQQMVHG
Sbjct: 301 LIVGEMEQQMVHG 313

[Close]

BLAST of Sed0013108 vs. ExPASy TrEMBL
Match: A0A6J1FVP4 (F-box protein SKIP8-like OS=Cucurbita moschata OX=3662 GN=LOC111447294 PE=4 SV=1)

HSP 1 Score: 510.0 bits (1312), Expect = 6.8e-141
Identity = 257/313 (82.11%), Postives = 273/313 (87.22%), Query Frame = 0


Query: 1   MEISSASTVSLPPQPSPIAAIVTFLCSLLAVFAAVRLVYVPLIKRTKPPQSEGFGARNCN 60
           MEI+SA TV+L  QP PIAAIVTFLC LLA+FAAVRLV VP I+RTK  QSEG G RNCN
Sbjct: 1   MEIASAVTVALWSQPFPIAAIVTFLCFLLALFAAVRLVSVPFIRRTKALQSEGVGTRNCN 60

Query: 61  C-----GG--FGGLDPGTEVSSSITASMPYLNGRVTEVLEKAPVVVNERLTGASMMEQLV 120
           C     GG   GGLDP  EV+SS   +MPYLNGRV EVLEK P+VV ER TGASMMEQLV
Sbjct: 61  CTCSLNGGVVIGGLDPRAEVTSSTRTTMPYLNGRVVEVLEKTPMVVTERQTGASMMEQLV 120

Query: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPVNGWKAY 180
           PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDF+LEQDTVTP+NGWKAY
Sbjct: 121 PEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFSLEQDTVTPINGWKAY 180

Query: 181 YAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNAVIQNWQVAF 240
           YAATRTIMNIN+QF NIIRERSLQ MS FWLNADYVKCIHASGEFFSGYNAVIQ+WQVAF
Sbjct: 181 YAATRTIMNINAQFCNIIRERSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAF 240

Query: 241 NWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWYMVHHHSSVM 300
           NWE  INFQ+RDVRARVLTDMAWVSMKTYVDMD GPFNVTNVYE+H+GRWYMVHHHSSVM
Sbjct: 241 NWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNVYEYHNGRWYMVHHHSSVM 300

Query: 301 M-----EQQMVHG 302
           +     E+QM HG
Sbjct: 301 LIVGEVEEQMAHG 313

[Close]

BLAST of Sed0013108 vs. TAIR 10
Match: AT4G10925.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 326.6 bits (836), Expect = 2.1e-89
Identity = 147/197 (74.62%), Postives = 174/197 (88.32%), Query Frame = 0


Query: 105 GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTV 164
           G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD +
Sbjct: 33  GVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDGI 92

Query: 165 TPVNGWKAYYAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNA 224
           TPVNGWK YYA TR I+++N++F+ IIR+R+LQ M+  WLN+DYVKCIHASGE FSGYN 
Sbjct: 93  TPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNE 152

Query: 225 VIQNWQVAFNWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWY 284
           VIQ+WQ+ FNWE   +FQ+  VR R+LTDMAWV+MK Y+++D GPF +TNV+EFH+GRW+
Sbjct: 153 VIQSWQLCFNWEQGFDFQVHTVRTRILTDMAWVTMKAYLNVDGGPFLITNVFEFHNGRWH 212

Query: 285 MVHHHSSVMM--EQQMV 300
           MVHHHSSVM+  +QQ+V
Sbjct: 213 MVHHHSSVMLIDDQQVV 229

[Close]

BLAST of Sed0013108 vs. TAIR 10
Match: AT4G10925.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 326.6 bits (836), Expect = 2.1e-89
Identity = 147/197 (74.62%), Postives = 174/197 (88.32%), Query Frame = 0


Query: 105 GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTV 164
           G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD +
Sbjct: 33  GVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDGI 92

Query: 165 TPVNGWKAYYAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNA 224
           TPVNGWK YYA TR I+++N++F+ IIR+R+LQ M+  WLN+DYVKCIHASGE FSGYN 
Sbjct: 93  TPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNE 152

Query: 225 VIQNWQVAFNWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWY 284
           VIQ+WQ+ FNWE   +FQ+  VR R+LTDMAWV+MK Y+++D GPF +TNV+EFH+GRW+
Sbjct: 153 VIQSWQLCFNWEQGFDFQVHTVRTRILTDMAWVTMKAYLNVDGGPFLITNVFEFHNGRWH 212

Query: 285 MVHHHSSVMM--EQQMV 300
           MVHHHSSVM+  +QQ+V
Sbjct: 213 MVHHHSSVMLIDDQQVV 229

[Close]

BLAST of Sed0013108 vs. TAIR 10
Match: AT4G10925.3 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 326.6 bits (836), Expect = 2.1e-89
Identity = 147/197 (74.62%), Postives = 174/197 (88.32%), Query Frame = 0


Query: 105 GASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTV 164
           G SMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQD +
Sbjct: 33  GVSMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDGI 92

Query: 165 TPVNGWKAYYAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGYNA 224
           TPVNGWK YYA TR I+++N++F+ IIR+R+LQ M+  WLN+DYVKCIHASGE FSGYN 
Sbjct: 93  TPVNGWKEYYATTRAIISVNTEFFTIIRDRALQAMARLWLNSDYVKCIHASGELFSGYNE 152

Query: 225 VIQNWQVAFNWEPAINFQIRDVRARVLTDMAWVSMKTYVDMDIGPFNVTNVYEFHDGRWY 284
           VIQ+WQ+ FNWE   +FQ+  VR R+LTDMAWV+MK Y+++D GPF +TNV+EFH+GRW+
Sbjct: 153 VIQSWQLCFNWEQGFDFQVHTVRTRILTDMAWVTMKAYLNVDGGPFLITNVFEFHNGRWH 212

Query: 285 MVHHHSSVMM--EQQMV 300
           MVHHHSSVM+  +QQ+V
Sbjct: 213 MVHHHSSVMLIDDQQVV 229

[Close]

BLAST of Sed0013108 vs. TAIR 10
Match: AT4G23960.1 (F-box family protein )

HSP 1 Score: 151.8 bits (382), Expect = 9.1e-37
Identity = 67/115 (58.26%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 108 MMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDNAWKALYHKDFTLEQDTVTPV 167
           M+EQL PE+T +AL YLDY SLC+LSMT+S MRK ANDD  W+ALY ++FT E +  TPV
Sbjct: 1   MIEQLFPEVTCYALRYLDYSSLCQLSMTSSSMRKTANDDVLWRALYFQEFTEETNGGTPV 60

Query: 168 NGWKAYYAATRTIMNINSQFYNIIRERSLQGMSDFWLNADYVKCIHASGEFFSGY 223
           NGWKA++A T+ +M +N +F++I+  RSL  M+  WLN+DYVKC + SGE F+GY
Sbjct: 61  NGWKAFFAVTKQVMTVNDKFFSILDSRSLPRMTSLWLNSDYVKCFNGSGELFTGY 115

The following BLAST results are available for this feature:

BLAST of Sed0013108 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044925.1	5.7e-142	82.11	F-box protein SKIP8 [Cucumis melo var. makuwa] >TYK16545.1 F-box protein SKIP8 [...	[more]
XP_038880969.1	7.5e-142	82.11	F-box protein SKIP8-like [Benincasa hispida]	[more]
XP_008451931.1	7.5e-142	81.79	PREDICTED: F-box protein SKIP8 [Cucumis melo]	[more]
XP_004149013.1	2.8e-141	81.47	F-box protein SKIP8 [Cucumis sativus] >KGN53419.1 hypothetical protein Csa_01522...	[more]
XP_022931549.1	3.7e-141	82.11	F-box protein SKIP8-like [Cucurbita moschata] >XP_023553511.1 F-box protein SKIP...	[more]

BLAST of Sed0013108 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YV9	2.9e-88	74.62	F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1	[more]
Q9T0B0	1.3e-35	58.26	Probable F-box protein At4g23960 OS=Arabidopsis thaliana OX=3702 GN=At4g23960 PE...	[more]

BLAST of Sed0013108 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TU63	2.8e-142	82.11	F-box protein SKIP8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G0...	[more]
A0A1S3BTF9	3.6e-142	81.79	F-box protein SKIP8 OS=Cucumis melo OX=3656 GN=LOC103493084 PE=4 SV=1	[more]
A0A0A0KX34	1.4e-141	81.47	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G052690 PE=4 ...	[more]
A0A6J1EUJ3	1.8e-141	82.11	F-box protein SKIP8-like OS=Cucurbita moschata OX=3662 GN=LOC111437693 PE=4 SV=1	[more]
A0A6J1FVP4	6.8e-141	82.11	F-box protein SKIP8-like OS=Cucurbita moschata OX=3662 GN=LOC111447294 PE=4 SV=1	[more]

BLAST of Sed0013108 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10925.1	2.1e-89	74.62	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.2	2.1e-89	74.62	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G10925.3	2.1e-89	74.62	Nuclear transport factor 2 (NTF2) family protein	[more]
AT4G23960.1	9.1e-37	58.26	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1280.50		coord: 98..150 e-value: 2.8E-6 score: 28.9
None	No IPR available	GENE3D	3.10.450.50		coord: 172..299 e-value: 2.9E-32 score: 113.5
IPR037401	SnoaL-like domain	PFAM	PF13474	SnoaL_3	coord: 180..295 e-value: 4.9E-26 score: 91.5
IPR044260	F-box protein SKIP8-like	PANTHER	PTHR47124	F-BOX PROTEIN SKIP8	coord: 14..297
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 106..152 score: 8.59666
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 105..288
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 175..294

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013108.1	Sed0013108.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding