Sed0013073 (gene) Chayote v1

Overview
NameSed0013073
Typegene
OrganismSechium edule (Chayote v1)
DescriptionKinase superfamily protein
LocationLG11: 24991326 .. 24991894 (+)
RNA-Seq ExpressionSed0013073
SyntenySed0013073
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGAGTGATCACCGCCCACACACAAAACCCAAAGCTGCCGTCGGTTTCCGCCGCACATTTCCCTATGCCACCGCCCCTCCCTCCTTTATAAACTCCCACTTTCCCAAACTTCACTTTCTCACTGATTCTTCTCTTTCCCTACAAACCGTGGCGGCTATGGCACCCAAGTCTTATCCCGTTGAGAACCACATCGCCGGAGACCAAGAGGAGGCGGCGGTGGGCCCAGATGTGAGCAGGCGTATTCAGCTGAAGTCTTCTCAAGTACTCGACAAGGCGGTGGTGCTGCGGCGGATCCGGCACCGGAAGCGTGTTAGCAAGTTCAAAGCGGCGGTCGGAGCTCTGTTCAGCTCACCCATCGCCGACCAAAGCGCCGACAGTGGTCACACCAAATGGGTGGACGAACCCTTCACTTCACTTTAGACCAATTCCTAATTATTTTTAAGATTTTTCTTCTGTGCTTCCTTGTAGTGTAATTGTACCATTCATATGGCTGAAGATTGATGTGTGTATATATATATATATTTCTTTTCATTTAGATTTATCAGATATGACTTTCAATATATTCTTTAG

mRNA sequence

CGAGTGATCACCGCCCACACACAAAACCCAAAGCTGCCGTCGGTTTCCGCCGCACATTTCCCTATGCCACCGCCCCTCCCTCCTTTATAAACTCCCACTTTCCCAAACTTCACTTTCTCACTGATTCTTCTCTTTCCCTACAAACCGTGGCGGCTATGGCACCCAAGTCTTATCCCGTTGAGAACCACATCGCCGGAGACCAAGAGGAGGCGGCGGTGGGCCCAGATGTGAGCAGGCGTATTCAGCTGAAGTCTTCTCAAGTACTCGACAAGGCGGTGGTGCTGCGGCGGATCCGGCACCGGAAGCGTGTTAGCAAGTTCAAAGCGGCGGTCGGAGCTCTGTTCAGCTCACCCATCGCCGACCAAAGCGCCGACAGTGGTCACACCAAATGGGTGGACGAACCCTTCACTTCACTTTAGACCAATTCCTAATTATTTTTAAGATTTTTCTTCTGTGCTTCCTTGTAGTGTAATTGTACCATTCATATGGCTGAAGATTGATGTGTGTATATATATATATATTTCTTTTCATTTAGATTTATCAGATATGACTTTCAATATATTCTTTAG

Coding sequence (CDS)

ATGGCACCCAAGTCTTATCCCGTTGAGAACCACATCGCCGGAGACCAAGAGGAGGCGGCGGTGGGCCCAGATGTGAGCAGGCGTATTCAGCTGAAGTCTTCTCAAGTACTCGACAAGGCGGTGGTGCTGCGGCGGATCCGGCACCGGAAGCGTGTTAGCAAGTTCAAAGCGGCGGTCGGAGCTCTGTTCAGCTCACCCATCGCCGACCAAAGCGCCGACAGTGGTCACACCAAATGGGTGGACGAACCCTTCACTTCACTTTAG

Protein sequence

MAPKSYPVENHIAGDQEEAAVGPDVSRRIQLKSSQVLDKAVVLRRIRHRKRVSKFKAAVGALFSSPIADQSADSGHTKWVDEPFTSL
Homology
BLAST of Sed0013073 vs. NCBI nr
Match: KAG6598407.1 (hypothetical protein SDJN03_08185, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 61/100 (61.00%), Postives = 72/100 (72.00%), Query Frame = 0

Query: 1   MAPKSYPVENHIAGDQEE---------AAVGPDVSRRIQLKSSQ----VLDKAVVLRRIR 60
           M+P    VEN IAG QEE         AAVGPDV+R I +KSS+     L+KAVVLRRIR
Sbjct: 4   MSPHPCSVENSIAGAQEEAEMEMETEAAAVGPDVTRHIMVKSSRSTQVSLEKAVVLRRIR 63

Query: 61  HRKRVSKFKAAVGALFSSPIADQSADSGHTKWVDEPFTSL 88
           HRKRV+KF+A VGALFSSP AD++ ++   KWVDEPFTSL
Sbjct: 64  HRKRVNKFQAVVGALFSSPFADKADETRQRKWVDEPFTSL 103

BLAST of Sed0013073 vs. NCBI nr
Match: KAG6585633.1 (hypothetical protein SDJN03_18366, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020540.1 hypothetical protein SDJN02_17225, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.3 bits (251), Expect = 4.4e-18
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 0

Query: 1  MAPKSYPVENHIAGDQE------EAAVGPDVSRRIQLKSS---QVLDKAVVLRRIRHRKR 60
          ++P SYPV     GDQE      +AA  PDV+R I+LKSS   QVL+KAVVLRRIR RKR
Sbjct: 4  VSPHSYPV-----GDQEKDKTVADAAASPDVTRHIRLKSSHSTQVLEKAVVLRRIRQRKR 63

Query: 61 VSKFKAAVGALFSSPIADQSADSGHTKWVDEPFTSL 88
          V+KF+A VGALFSSP  D++ ++   KWVDEPFTSL
Sbjct: 64 VNKFQAVVGALFSSPFGDKTGEARQRKWVDEPFTSL 94

BLAST of Sed0013073 vs. NCBI nr
Match: KAA0065270.1 (hypothetical protein E6C27_scaffold82G006120 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-17
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 0

Query: 1   MAPKSYPVENHIAGDQEE--------AAVGPDVSRRIQLKSS-----QVLDKAVVLRRIR 60
           M+P+ Y VE  I GDQ E        AA+GP V+R I +KSS     Q L+KAVVLRRIR
Sbjct: 4   MSPRPYSVEKKIDGDQVEAEIETEVSAALGPAVTRHIVVKSSPSHSNQALEKAVVLRRIR 63

Query: 61  HRKRVSKFKAAVGALFSSPIADQSADSGHTKWVDEPFTSL 88
            RKRV+K +AAVGALFSSP  D++ ++   KWVDEPFTSL
Sbjct: 64  QRKRVNKLRAAVGALFSSPFTDKTEETHQRKWVDEPFTSL 103

BLAST of Sed0013073 vs. NCBI nr
Match: KGN62559.1 (hypothetical protein Csa_022598 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-15
Identity = 58/110 (52.73%), Postives = 68/110 (61.82%), Query Frame = 0

Query: 1   MAPKSYPVENHIAGDQEEA--------------AVGPDVSRRIQLKSS---------QVL 60
           M+P+ Y VE  IAGDQ EA              A+GP V+R I +KSS         Q L
Sbjct: 4   MSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSNQAL 63

Query: 61  DKAVVLRRIRHRKRVSKFKAAVGALFSSPIADQSADSGHTKWVDEPFTSL 88
           +KAVVLRRIR RKRV+K +AAVGALFSSP  D++      KWVDEPFTSL
Sbjct: 64  EKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

BLAST of Sed0013073 vs. NCBI nr
Match: KAG7029360.1 (Wall-associated receptor kinase-like 14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-13
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 0

Query: 1  MAPKSYPVENHIAGDQEE---------AAVGPDVSRRIQLKSSQ----VLDKAVVLRRIR 60
          M+P    VEN IAG QEE         AAVGPDV+R I +KSS+     L+KAVVLRRIR
Sbjct: 4  MSPHPCSVENSIAGAQEEAEMEMETEAAAVGPDVTRHIMVKSSRSTQVSLEKAVVLRRIR 63

Query: 61 HRKRVSKFKAAVGALFSSPIADQSADS 75
          HRKRV+KF+A VGALFSSP AD++ ++
Sbjct: 64 HRKRVNKFQAVVGALFSSPFADKADET 90

BLAST of Sed0013073 vs. ExPASy TrEMBL
Match: A0A5A7VDJ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G006120 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 8.0e-18
Identity = 57/100 (57.00%), Postives = 69/100 (69.00%), Query Frame = 0

Query: 1   MAPKSYPVENHIAGDQEE--------AAVGPDVSRRIQLKSS-----QVLDKAVVLRRIR 60
           M+P+ Y VE  I GDQ E        AA+GP V+R I +KSS     Q L+KAVVLRRIR
Sbjct: 4   MSPRPYSVEKKIDGDQVEAEIETEVSAALGPAVTRHIVVKSSPSHSNQALEKAVVLRRIR 63

Query: 61  HRKRVSKFKAAVGALFSSPIADQSADSGHTKWVDEPFTSL 88
            RKRV+K +AAVGALFSSP  D++ ++   KWVDEPFTSL
Sbjct: 64  QRKRVNKLRAAVGALFSSPFTDKTEETHQRKWVDEPFTSL 103

BLAST of Sed0013073 vs. ExPASy TrEMBL
Match: A0A0A0LNJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.3e-15
Identity = 58/110 (52.73%), Postives = 68/110 (61.82%), Query Frame = 0

Query: 1   MAPKSYPVENHIAGDQEEA--------------AVGPDVSRRIQLKSS---------QVL 60
           M+P+ Y VE  IAGDQ EA              A+GP V+R I +KSS         Q L
Sbjct: 4   MSPQPYSVEKKIAGDQVEAEIETESAAAGAGADALGPAVTRHIVVKSSSSSSSYQSNQAL 63

Query: 61  DKAVVLRRIRHRKRVSKFKAAVGALFSSPIADQSADSGHTKWVDEPFTSL 88
           +KAVVLRRIR RKRV+K +AAVGALFSSP  D++      KWVDEPFTSL
Sbjct: 64  EKAVVLRRIRQRKRVNKLRAAVGALFSSPFTDKT----ERKWVDEPFTSL 109

BLAST of Sed0013073 vs. ExPASy TrEMBL
Match: A0A6P5MGE6 (uncharacterized protein LOC110274446 OS=Arachis duranensis OX=130453 GN=LOC110274446 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 9  ENHIAGDQEEAAVGPDVSRRIQLKSSQ-----VLDKAVVLRRIRHRKRVSKFKAAVGALF 68
          E+    ++EE+   P V+ ++ LK S+      +DK VVLRRIRHR+RV+K +AAVG+ F
Sbjct: 16 EDEAEFEKEESV--PTVTSKLFLKPSENQKPGNMDKEVVLRRIRHRRRVNKVRAAVGSFF 75

Query: 69 SSPIADQSADSGHTKWVDEPFTSL 88
          SSP +       H KWVD+PF +L
Sbjct: 76 SSPFSTDH----HRKWVDDPFAAL 93

BLAST of Sed0013073 vs. ExPASy TrEMBL
Match: A0A7J7D397 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW11G00807 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 15  DQEEAAVGPDVSRRIQLK---SSQVLDKAVVLRRIRHRKRVSKFKAAVGALFSSPIADQS 74
           DQE+  +   V+  + LK   ++Q LD+ VVLRRIR+RKRV+K KAA+ +LF SPI+ ++
Sbjct: 24  DQEDPEISNSVTTHLYLKPAHTTQTLDREVVLRRIRNRKRVNKIKAALLSLFGSPISSET 83

Query: 75  ADSGHTK--WVDEPFTSL 88
             +   K  WVD+ F +L
Sbjct: 84  EKTSVDKKRWVDDAFAAL 101

BLAST of Sed0013073 vs. ExPASy TrEMBL
Match: A0A7J7D384 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW11G00806 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.0e-06
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 15  DQEEAAVGPDVSRRIQLK---SSQVLDKAVVLRRIRHRKRVSKFKAAVGALFSSPIADQS 74
           DQE+  +   V+  + LK   ++Q LD+ V+LR+IR+RKRV+K KAA+ +LF SPI+ ++
Sbjct: 24  DQEDPEISNSVTTHLYLKPAHTTQTLDREVILRQIRNRKRVNKIKAALLSLFGSPISSET 83

Query: 75  ADSGHTK--WVDEPFTSL 88
             +   K  WVD+ F +L
Sbjct: 84  EKTSVDKKRWVDDAFAAL 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6598407.11.4e-1961.00hypothetical protein SDJN03_08185, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585633.14.4e-1860.42hypothetical protein SDJN03_18366, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0065270.11.7e-1757.00hypothetical protein E6C27_scaffold82G006120 [Cucumis melo var. makuwa][more]
KGN62559.12.6e-1552.73hypothetical protein Csa_022598 [Cucumis sativus][more]
KAG7029360.14.2e-1358.62Wall-associated receptor kinase-like 14, partial [Cucurbita argyrosperma subsp. ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VDJ58.0e-1857.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LNJ01.3e-1552.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360760 PE=4 SV=1[more]
A0A6P5MGE62.2e-0745.24uncharacterized protein LOC110274446 OS=Arachis duranensis OX=130453 GN=LOC11027... [more]
A0A7J7D3971.9e-0644.87Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW11G00807 ... [more]
A0A7J7D3847.0e-0642.31Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW11G00806 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35324BNAA08G03750D PROTEINcoord: 10..87
NoneNo IPR availablePANTHERPTHR35324:SF4BNAA08G03750D PROTEINcoord: 10..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0013073.1Sed0013073.1mRNA