Sed0013043 (gene) Chayote v1

Overview


Name	Sed0013043
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L18a-like protein
Location	LG08: 38937472 .. 38940915 (+)
RNA-Seq Expression	Sed0013043
Synteny	Sed0013043

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAATTCAATCCCTCCAAAATTTCCCGGCGAAACCTCGAAGAAGAAGAAGAAGAAGAACAGAAAAGCGACGACGGAACCCTAGCCGTCGCCTCCATAAATCAAAGATCATATTTGATTTTGATTTTCTTCTTCTTCTTCTTCTGCAATTAATATGAGTTGCGATGGGATGAACAACGCGTTAAACGGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGCGTTGCAAACTATTATCCTCCTGCCCCACAATCGCAGCCCCAATCTTTCGTCGGCGTCCATCATCAGCCAGTAATTTCTGGCCACCAACCTTGTTACCATGGACATCTAGGTTACCAATCTATTCCAGGTAAATAACTCTCCTCACTGATGTCTTTAATTTGGTGGATCTTGTTATGGTTTCAATTTTGTTAGATTAATTGTGAATTCAGTAATTGTGTGCCCTATGTATAATCTTGTTTGAAGGGCATTTACGAATTGTTTTCACTGTTAGTTTAATTATGAATTCAGAAACTACGTCTCGTATGATTTTTAGTTTTTACTAATGATCATGTATTTTTTTCTTTCTTTTTATTGGTATTTTTTGTTTGATGGTTGGTTTACAATTGGTTTGTTTTATGTGATGTTTGGGCTAGGTTATTGATCTAATGGTATGGATGTACGAATGCTATTCCGAAGCCCAGACCCCGGTTTTAATATTGCCCTCTAATAGTGTTTTAGGATGTGAGAAATATGGTTGAAATTGTGTTCAGAATTCATAGGGACTGTTTGCATAATTTACCTATAGAGGAATCATAGTCGAAGCTGAATTTGAATGCTTGAAGAACTAATTTATTGAAATAATGATGATCTAGCCAGCGAAAGGGTAGGATTTTAATCTTGAGTCTGGTAATAGGACAAAACAATTTATTTTGGATCAAGAAGCAATGTTTATAGCATTAACATGAAGATGTGCAAAGCAAGGAGGAGAGAGATTGAGAATAAATTTTCTGATTGACTTGAATTTTAAAAGGAGAATAATTGCAAAAGTCTCAACTTTGAGACTTCCAGTACCAGTGTACCACCTAACCTAGCTTCAAAAACCAGAGAACTCCCTTAAAAATTCAAAATCTCTTTGAACTTGATGGTTTTTGTGATAGGAATCAAAACTTTTCTCATCTTAATTCTTCCATATTATGGTACTTCTCTTTCCACATTTCAACTCTTTCCATATCAGAACTTAAGGGGTCTAATGGTCCCTTTCTTTCCACATCTCAATTCTTCCACATCAGGGAAATTCTCTCAAAGAATTTGTAGATTGCGTGCATAATCACTTATTTTATGTGTCTAAGTCGCCTAGGAAAGTTTTCTAGAGGATGGAGAATATTCTAAGGAACTTTCTGAAGCCCTGACCTTTGGTAGTGGCTTGAATCTAACTAATTTGAAGCAGGTTTCTTCAGCAGGAGAAGGATGTTGGATGTCACTAGGGCATTATATGGGATGGTGAGGGAGAAAGGAAGTCTTTTTTATAAATGAAAAATAAGAGTATGCAATTCAGATTCAGTTGCTTAATACTATTGACGTTAATTAATCGTAAAGTGATTAGAGGAGATGTGTTCCAACCCATGGTAGTCATGTGATGTACTAAGAATTAATTTACTACTAGTTAGTAGTTACCTTGACAATCAAATCTAGTATGATCATTCAATTGTCCTTGAAAAAGAAGAACCAAAAACATTTCTATTGATAAAATGGAAGTGTCCCGGGAAAATAGTAGAAGTGTGCACAAGCTGACCGGAAATTCACGGATATAAAAAGTTACTATTGAGGTTAATTAATAATAAAGATATCTTTGAAAGTTGAATGCCATGTTCTTAGATTATATTGCAACATTACCAATTGTTGTGCCTTATGGTTAATCCGTATACCATCATATAAAATTCCGTTTGTGGAGTTTTTGTATAGGCATGTGAATCTTTATATCTTTATTTTTGCTCAATGGTTGGGATGTCTTTATATATCCATCATTTGCCTTAATGCTTTTGTTTCTTGTAGTTCAAGGATATGCTATTATTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGTTGTGGCATTGGCATGGGCTGGTTCTTGTAAGTTAAATTTGTAACTTCACATTTCGCTACACCCATTTCCAACATGTCCATGATTATAATAAAAAAACATTTGCTTGCCAGGTTTATCGTAGGTTTCTTTCTTGGTGGAATTCCCTGGTATATTGGAGCTTTTATCGCACTCTTTGTACAGGTTGATTATCGAGAAAAGCCTGGATATGTTGCATGTGTAATTGCTGTAAGTAGCTTTTATTCTAATATGATTTCCCACCACACCTATCTTTAAAAATATACTATTTGTGATGAAAAAGATTAGAGATGTTTGAACCATTATGAGTGGCCTTAATTGTCAAACAAGGGCATGGTCAGTTTAGAGATTACTAGTTCAATTTCCATGGTGGCCACCTACCTATAAATTAATTTCTTATAAATTTTCTAGACAATCAAATGTACGGGTCAAACGATTGTTCAATAAGAATAGTCAAAGTGCACATAAGTTTGCATTGAGTTTCTTCGTGGATATTTAAAAAAATTTGAGCTGTTTGAAAATATCCTCTAAAAATTTATGTTTGAAAATAAATACGATTTTCAAAAACTAAAAACTAAGTTCAAATGATGGTTGAACTTGGTTGAATCAAACCTCCCGGGAATTGTTGAAGATGGGCAATGAGCTTGAGATGGGGCATCCAAGACTTTGGTTATAAGAAAATAATAGTAGTCCGATGGGGTAGCGGCGTAGCGTGCGCGGTCGAAGGCTTGAGTTTTGAAGGGATCTTTTTCTTAAGGTTTTAGGTTCGAGACTCACTTGTGACATTAATTTGTAGACACTTTTTGTGTCTCAATTCTTTCGATGTTTCCCGGTACTTGACCTAGTGAAGGACATTGTTTCCTCAGGTCTAGTGGAGCAAGCTTCGATTTTTCGGTTTCAAATAGTAGGACTGAAAATGAACCCAAAGTTTATCTACCTTAAAAAAACAAGATGTTACGATTTCCATGTACTTCAGGATCTTGATCTGTTTTTTCCTTGCTCGTGCAGTCGGTTCTTGTTGGCCTTGCTATAATATTTGGTATAACCAATGGATCTGATTTCTGGTGAAGGAGACAATTTGCACAACGGTGGGATTCTGCATCAACGAAAACAACTGGTGTGATTCTGTAATTAGCTTTTAGTTTGTATTATTTCACTCTCTCTATATATATCAACTTATTGGTTTCCTTTATTACTGCAACCTTTATGACTTGCCAAATATGAAATATTAATAGTTTGAAAAAAAATTAAATTATTTGTATTGAATATCTTGGTCGATTTTTATCGACAACTTTCATTGAATGTTTGGATTGATGAATGATTGGTTTAATCAA

mRNA sequence

CTAATTCAATCCCTCCAAAATTTCCCGGCGAAACCTCGAAGAAGAAGAAGAAGAAGAACAGAAAAGCGACGACGGAACCCTAGCCGTCGCCTCCATAAATCAAAGATCATATTTGATTTTGATTTTCTTCTTCTTCTTCTTCTGCAATTAATATGAGTTGCGATGGGATGAACAACGCGTTAAACGGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGCGTTGCAAACTATTATCCTCCTGCCCCACAATCGCAGCCCCAATCTTTCGTCGGCGTCCATCATCAGCCAGTAATTTCTGGCCACCAACCTTGTTACCATGGACATCTAGGTTACCAATCTATTCCAGTTCAAGGATATGCTATTATTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGTTGTGGCATTGGCATGGGCTGGTTCTTGTTTATCGTAGGTTTCTTTCTTGGTGGAATTCCCTGGTATATTGGAGCTTTTATCGCACTCTTTGTACAGGTTGATTATCGAGAAAAGCCTGGATATGTTGCATGTGTAATTGCTTCGGTTCTTGTTGGCCTTGCTATAATATTTGGTATAACCAATGGATCTGATTTCTGGTGAAGGAGACAATTTGCACAACGGTGGGATTCTGCATCAACGAAAACAACTGGTGTGATTCTGTAATTAGCTTTTAGTTTGTATTATTTCACTCTCTCTATATATATCAACTTATTGGTTTCCTTTATTACTGCAACCTTTATGACTTGCCAAATATGAAATATTAATAGTTTGAAAAAAAATTAAATTATTTGTATTGAATATCTTGGTCGATTTTTATCGACAACTTTCATTGAATGTTTGGATTGATGAATGATTGGTTTAATCAA

Coding sequence (CDS)

ATGAGTTGCGATGGGATGAACAACGCGTTAAACGGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGCGTTGCAAACTATTATCCTCCTGCCCCACAATCGCAGCCCCAATCTTTCGTCGGCGTCCATCATCAGCCAGTAATTTCTGGCCACCAACCTTGTTACCATGGACATCTAGGTTACCAATCTATTCCAGTTCAAGGATATGCTATTATTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGTTGTGGCATTGGCATGGGCTGGTTCTTGTTTATCGTAGGTTTCTTTCTTGGTGGAATTCCCTGGTATATTGGAGCTTTTATCGCACTCTTTGTACAGGTTGATTATCGAGAAAAGCCTGGATATGTTGCATGTGTAATTGCTTCGGTTCTTGTTGGCCTTGCTATAATATTTGGTATAACCAATGGATCTGATTTCTGGTGA

Protein sequence

MSCDGMNNALNGDPQSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGHQPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW

Homology

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BLAST of Sed0013043 vs. NCBI nr
Match: XP_004147407.1 (60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN65566.1 hypothetical protein Csa_019751 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 2.4e-64
Identity = 121/159 (76.10%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHH---QPVISGH 60
           MS DG +N + GDP SQYHYGTFQGVANYY     P PQ QPQS VG      QPV+SGH
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60

Query: 61  QPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFI 120
           QPCYHGHLGYQ++PVQGYAI+EGRPFQEARLPCCGIGMGWFLF++GFFLGGIPWY+GAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 ALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW 153
            LFV+VDYREKPGYVAC IASVL  +AI FGITNG + W
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

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BLAST of Sed0013043 vs. NCBI nr
Match: XP_038895475.1 (60S ribosomal protein L18a-like protein [Benincasa hispida])

HSP 1 Score: 254.6 bits (649), Expect = 5.4e-64
Identity = 121/156 (77.56%), Postives = 135/156 (86.54%), Query Frame = 0


Query: 1   MSCDGMNNALNGDPQSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPV----ISGHQPC 60
           MS DG ++A+ GDPQSQYHYGTFQGVANYY  APQ+QPQSFVG   QPV    +SGH PC
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPQAQPQSFVG-FPQPVTPSGVSGHHPC 60

Query: 61  YHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFIALF 120
           YHGHLGYQ++PVQGYAIIE RPF+EARLPCCGIGMGWFLF++GFFLGGIPWY+GAFI LF
Sbjct: 61  YHGHLGYQAVPVQGYAIIERRPFEEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFIVLF 120

Query: 121 VQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW 153
           V+VDYREKPGYVAC IASVL  +AI FGITNG + W
Sbjct: 121 VRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 155

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BLAST of Sed0013043 vs. NCBI nr
Match: XP_008444018.1 (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 4.6e-63
Identity = 119/159 (74.84%), Postives = 132/159 (83.02%), Query Frame = 0


Query: 1   MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHH---QPVISGH 60
           MS DG ++ + GDP SQYHYGTFQGVANYY     P PQ QPQS VG       PV+SGH
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAPPVVSGH 60

Query: 61  QPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFI 120
           QPCYHGHLGYQ++PVQGYAI+EGRPFQEARLPCCGIGMGWFLF++GFFLGGIPWY+GAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 ALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW 153
            LFV+VDYREKPGYVAC IASVL  +AI FGITNG + W
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

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BLAST of Sed0013043 vs. NCBI nr
Match: XP_022140257.1 (60S ribosomal protein L18a-like protein [Momordica charantia])

HSP 1 Score: 245.7 bits (626), Expect = 2.5e-61
Identity = 117/159 (73.58%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 1   MSCDGMNNALNGDPQSQYHYGTFQGVANYYP----PAPQSQPQSFVGVHH---QPVISGH 60
           MS DG N+A+ GDPQSQYHYGTFQGVANYYP    P PQ QP S VG       P +SG 
Sbjct: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60

Query: 61  QPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFI 120
            P YHGHLGYQ++PVQGYAIIEGRP+QEARLPCCGIGMGWFLF++GFFLGGIPWY+GAFI
Sbjct: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120

Query: 121 ALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW 153
            LFV+VDYREKPGYVACVIASVL  +AI FG+T G++ W
Sbjct: 121 VLFVRVDYREKPGYVACVIASVLALVAITFGVTKGAESW 159

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BLAST of Sed0013043 vs. NCBI nr
Match: XP_023001481.1 (60S ribosomal protein L18a-like protein [Cucurbita maxima])

HSP 1 Score: 239.6 bits (610), Expect = 1.8e-59
Identity = 112/156 (71.79%), Postives = 127/156 (81.41%), Query Frame = 0


Query: 1   MSCDGMNNALNGDPQSQYHYGTFQGVANYYPPAPQSQ----PQSFVGVHHQPVISGHQPC 60
           MSCDG ++A+ GDPQSQYHYGTFQGVANYY  APQ Q    PQS VG   Q V     PC
Sbjct: 1   MSCDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPQPQPQPHPQSVVGFPPQ-VAPPRHPC 60

Query: 61  YHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFIALF 120
           YHGHL YQ++PVQGYAIIEGRPF EARLPCCGIGMGWFLF++GFFLGGIPWY+GAF+ LF
Sbjct: 61  YHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFVVLF 120

Query: 121 VQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW 153
           V+VDYREKPGY+AC IASVL  +AI FG++ G + W
Sbjct: 121 VRVDYREKPGYIACAIASVLAVMAITFGVSKGVEIW 155

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BLAST of Sed0013043 vs. ExPASy Swiss-Prot
Match: Q8L9S1 (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 9.6e-32
Identity = 74/145 (51.03%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 15  QSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGH-QPCYHGHLG----YQSIP-- 74
           Q QY+YGTFQGVAN+  P P   PQ     H      GH      GH G     Q  P  
Sbjct: 16  QHQYYYGTFQGVANF--PTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVV 75

Query: 75  VQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGY 134
           V  Y ++E RP  E  LPCCG+GMGWFLFI+GF  GGIPWY+GAFI L   VD+REK GY
Sbjct: 76  VPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGY 135

Query: 135 VACVIASVLVGLAIIFGITNGSDFW 153
           VAC IASV+  +A++ G+T   + W
Sbjct: 136 VACSIASVVYLIAVMLGMTGDINIW 158

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BLAST of Sed0013043 vs. ExPASy TrEMBL
Match: A0A0A0M051 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448970 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.2e-64
Identity = 121/159 (76.10%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHH---QPVISGH 60
           MS DG +N + GDP SQYHYGTFQGVANYY     P PQ QPQS VG      QPV+SGH
Sbjct: 1   MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGH 60

Query: 61  QPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFI 120
           QPCYHGHLGYQ++PVQGYAI+EGRPFQEARLPCCGIGMGWFLF++GFFLGGIPWY+GAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 ALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW 153
            LFV+VDYREKPGYVAC IASVL  +AI FGITNG + W
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of Sed0013043 vs. ExPASy TrEMBL
Match: A0A1S3B9D9 (60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103487462 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.2e-63
Identity = 119/159 (74.84%), Postives = 132/159 (83.02%), Query Frame = 0


Query: 1   MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHH---QPVISGH 60
           MS DG ++ + GDP SQYHYGTFQGVANYY     P PQ QPQS VG       PV+SGH
Sbjct: 1   MSGDGKSSVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAPPVVSGH 60

Query: 61  QPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFI 120
           QPCYHGHLGYQ++PVQGYAI+EGRPFQEARLPCCGIGMGWFLF++GFFLGGIPWY+GAFI
Sbjct: 61  QPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFI 120

Query: 121 ALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW 153
            LFV+VDYREKPGYVAC IASVL  +AI FGITNG + W
Sbjct: 121 VLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW 159

[Close]

BLAST of Sed0013043 vs. ExPASy TrEMBL
Match: A0A6J1CGC1 (60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111010965 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 117/159 (73.58%), Postives = 131/159 (82.39%), Query Frame = 0


Query: 1   MSCDGMNNALNGDPQSQYHYGTFQGVANYYP----PAPQSQPQSFVGVHH---QPVISGH 60
           MS DG N+A+ GDPQSQYHYGTFQGVANYYP    P PQ QP S VG       P +SG 
Sbjct: 1   MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGP 60

Query: 61  QPCYHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFI 120
            P YHGHLGYQ++PVQGYAIIEGRP+QEARLPCCGIGMGWFLF++GFFLGGIPWY+GAFI
Sbjct: 61  HPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGAFI 120

Query: 121 ALFVQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW 153
            LFV+VDYREKPGYVACVIASVL  +AI FG+T G++ W
Sbjct: 121 VLFVRVDYREKPGYVACVIASVLALVAITFGVTKGAESW 159

[Close]

BLAST of Sed0013043 vs. ExPASy TrEMBL
Match: A0A6J1KIR0 (60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495603 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 8.7e-60
Identity = 112/156 (71.79%), Postives = 127/156 (81.41%), Query Frame = 0


Query: 1   MSCDGMNNALNGDPQSQYHYGTFQGVANYYPPAPQSQ----PQSFVGVHHQPVISGHQPC 60
           MSCDG ++A+ GDPQSQYHYGTFQGVANYY  APQ Q    PQS VG   Q V     PC
Sbjct: 1   MSCDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPQPQPQPHPQSVVGFPPQ-VAPPRHPC 60

Query: 61  YHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFIALF 120
           YHGHL YQ++PVQGYAIIEGRPF EARLPCCGIGMGWFLF++GFFLGGIPWY+GAF+ LF
Sbjct: 61  YHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFVVLF 120

Query: 121 VQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW 153
           V+VDYREKPGY+AC IASVL  +AI FG++ G + W
Sbjct: 121 VRVDYREKPGYIACAIASVLAVMAITFGVSKGVEIW 155

[Close]

BLAST of Sed0013043 vs. ExPASy TrEMBL
Match: A0A6J1EHH7 (60S ribosomal protein L18a-like protein OS=Cucurbita moschata OX=3662 GN=LOC111434348 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.6e-58
Identity = 110/156 (70.51%), Postives = 125/156 (80.13%), Query Frame = 0


Query: 1   MSCDGMNNALNGDPQSQYHYGTFQGVANYY----PPAPQSQPQSFVGVHHQPVISGHQPC 60
           MS DG ++A+ GDPQSQYHYGTFQGVANYY     P PQ  PQS VG   Q V     PC
Sbjct: 1   MSGDGKSSAVFGDPQSQYHYGTFQGVANYYSSAPEPQPQPHPQSVVGFPPQ-VAPPRHPC 60

Query: 61  YHGHLGYQSIPVQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFIALF 120
           YHGHL YQ++PVQGYAIIEGRPF EARLPCCGIGMGWFLF++GFFLGGIPWY+GAF+ LF
Sbjct: 61  YHGHLDYQAVPVQGYAIIEGRPFHEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAFVVLF 120

Query: 121 VQVDYREKPGYVACVIASVLVGLAIIFGITNGSDFW 153
           V+VDYREKPGY+AC IASVL  +AI FG++ G + W
Sbjct: 121 VRVDYREKPGYIACAIASVLAVMAITFGVSKGVEIW 155

[Close]

BLAST of Sed0013043 vs. TAIR 10
Match: AT1G17080.1 (Ribosomal protein L18ae family )

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-37
Identity = 74/139 (53.24%), Postives = 98/139 (70.50%), Query Frame = 0


Query: 16  SQYH-YGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGHQPCYHGHLGYQSIPVQGYAII 75
           +Q+H YGTFQGV+NY PP   +    F      P +      Y+ H GYQ++PV G  + 
Sbjct: 18  NQHHQYGTFQGVSNYPPPQNSAPVTGFPQPSAPPGVYDSGAPYYAH-GYQTVPVHG-GVA 77

Query: 76  EGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFIALF-VQVDYREKPGYVACVIA 135
           EGRP ++ RLPCCGIG+GWFLFIVGFFLG IPWY+G FI +F  ++DYREKPGY+AC IA
Sbjct: 78  EGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMMFGRRIDYREKPGYIACTIA 137

Query: 136 SVLVGLAIIFGITNGSDFW 153
           ++L  +A+I G++ G+D W
Sbjct: 138 AILATIAVILGVSKGADDW 154

[Close]

BLAST of Sed0013043 vs. TAIR 10
Match: AT1G29970.1 (60S ribosomal protein L18A-1 )

HSP 1 Score: 137.9 bits (346), Expect = 6.8e-33
Identity = 74/145 (51.03%), Postives = 88/145 (60.69%), Query Frame = 0


Query: 15  QSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGH-QPCYHGHLG----YQSIP-- 74
           Q QY+YGTFQGVAN+  P P   PQ     H      GH      GH G     Q  P  
Sbjct: 16  QHQYYYGTFQGVANF--PTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVV 75

Query: 75  VQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGY 134
           V  Y ++E RP  E  LPCCG+GMGWFLFI+GF  GGIPWY+GAFI L   VD+REK GY
Sbjct: 76  VPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGY 135

Query: 135 VACVIASVLVGLAIIFGITNGSDFW 153
           VAC IASV+  +A++ G+T   + W
Sbjct: 136 VACSIASVVYLIAVMLGMTGDINIW 158

[Close]

BLAST of Sed0013043 vs. TAIR 10
Match: AT1G53560.1 (Ribosomal protein L18ae family )

HSP 1 Score: 134.0 bits (336), Expect = 9.9e-32
Identity = 68/143 (47.55%), Postives = 87/143 (60.84%), Query Frame = 0


Query: 20  YGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGHQPC------YHGHLGYQSI----PVQ 79
           YGTFQGV  Y PP+    P       H PVI   QP       +H    +Q I     V 
Sbjct: 16  YGTFQGVPTYPPPSYPHPPS------HHPVIGIPQPSPPPGSPHHDISVHQYIQEHQTVA 75

Query: 80  GYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVA 139
           GY + +GRP ++ RLPCCG+G+GWFLFI+GF LG IPWY+G FI +  ++D REKPGYVA
Sbjct: 76  GYPVSQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVA 135

Query: 140 CVIASVLVGLAIIFGITNGSDFW 153
           C IA+V+  + I+FG+  G   W
Sbjct: 136 CTIAAVVATITIVFGVMGGRGVW 152

[Close]

BLAST of Sed0013043 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 124.8 bits (312), Expect = 6.0e-29
Identity = 68/126 (53.97%), Postives = 76/126 (60.32%), Query Frame = 0


Query: 15  QSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGH-QPCYHGHLG----YQSIP-- 74
           Q QY+YGTFQGVAN+  P P   PQ     H      GH      GH G     Q  P  
Sbjct: 16  QHQYYYGTFQGVANF--PTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVV 75

Query: 75  VQGYAIIEGRPFQEARLPCCGIGMGWFLFIVGFFLGGIPWYIGAFIALFVQVDYREKPGY 134
           V  Y ++E RP  E  LPCCG+GMGWFLFI+GF  GGIPWY+GAFI L   VD+REK GY
Sbjct: 76  VPDYTVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGY 135

[Close]

BLAST of Sed0013043 vs. TAIR 10
Match: AT1G29970.3 (60S ribosomal protein L18A-1 )

HSP 1 Score: 117.5 bits (293), Expect = 9.6e-27
Identity = 74/187 (39.57%), Postives = 88/187 (47.06%), Query Frame = 0


Query: 15  QSQYHYGTFQGVANYYPPAPQSQPQSFVGVHHQPVISGH-QPCYHGHLG----YQSIP-- 74
           Q QY+YGTFQGVAN+  P P   PQ     H      GH      GH G     Q  P  
Sbjct: 16  QHQYYYGTFQGVANF--PTPTPPPQFMQPQHPITTFPGHAYQNLQGHGGGVNYAQGFPVV 75

Query: 75  VQGYAIIEGRPFQEARLPCCGIGMGWFL-------------------------------- 134
           V  Y ++E RP  E  LPCCG+GMGWFL                                
Sbjct: 76  VPDYTVVEVRPMIEHELPCCGLGMGWFLSKLQKLRFMVVGNSSLLSWNLFVSSEILDELI 135

Query: 135 ----------FIVGFFLGGIPWYIGAFIALFVQVDYREKPGYVACVIASVLVGLAIIFGI 153
                     FI+GF  GGIPWY+GAFI L   VD+REK GYVAC IASV+  +A++ G+
Sbjct: 136 ASWNQYKKSVFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVMLGM 195

The following BLAST results are available for this feature:

BLAST of Sed0013043 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147407.1	2.4e-64	76.10	60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN65566.1 hypothetic...	[more]
XP_038895475.1	5.4e-64	77.56	60S ribosomal protein L18a-like protein [Benincasa hispida]	[more]
XP_008444018.1	4.6e-63	74.84	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]	[more]
XP_022140257.1	2.5e-61	73.58	60S ribosomal protein L18a-like protein [Momordica charantia]	[more]
XP_023001481.1	1.8e-59	71.79	60S ribosomal protein L18a-like protein [Cucurbita maxima]	[more]

BLAST of Sed0013043 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9S1	9.6e-32	51.03	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g2...	[more]

BLAST of Sed0013043 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M051	1.2e-64	76.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G448970 PE=4 SV=1	[more]
A0A1S3B9D9	2.2e-63	74.84	60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103487462 ...	[more]
A0A6J1CGC1	1.2e-61	73.58	60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1KIR0	8.7e-60	71.79	60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495...	[more]
A0A6J1EHH7	3.6e-58	70.51	60S ribosomal protein L18a-like protein OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of Sed0013043 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17080.1	1.2e-37	53.24	Ribosomal protein L18ae family	[more]
AT1G29970.1	6.8e-33	51.03	60S ribosomal protein L18A-1	[more]
AT1G53560.1	9.9e-32	47.55	Ribosomal protein L18ae family	[more]
AT1G29970.2	6.0e-29	53.97	60S ribosomal protein L18A-1	[more]
AT1G29970.3	9.6e-27	39.57	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46631:SF20	60S RIBOSOMAL PROTEIN L18A-LIKE PROTEIN	coord: 1..152
IPR044804	AT1G29970-like	PANTHER	PTHR46631	60S RIBOSOMAL PROTEIN L18A-LIKE	coord: 1..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013043.1	Sed0013043.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome