Sed0013028 (gene) Chayote v1

Overview


Name	Sed0013028
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RING-type E3 ubiquitin transferase
Location	LG02: 45931685 .. 45934919 (+)
RNA-Seq Expression	Sed0013028
Synteny	Sed0013028

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATTCCACCCTCATCTTCCTGTTCAGCGAATAAATTCCATTATTTTCAGTCTCACCCAATTAATTCAGCTTTAGGGTTCATTCCCATCTTCTCTCCCCTGCTGCTACTTCAATACATTCCTTCCCCTTTTCCTTCAATTCTCAAGGTACCTTCTGATTTTCATTTCTCGATTCTTGTTTTCTTACTTAGATTCTTACTCTCTTTTGCTGATGAGTGATGGGGATTGCCTTTATTTTGCATTTCACTGTTTGAATTTGATGTTTTCAGCTGCCTAAACCTGTTTTTGTATCTGGGTTTCCTTTAAAATTTAATGGGTACCTCATGAATTCGAGTTATTTGTATGTTGGAATTGGGAAAACTGATTCCCGAAATTGGTTTCACTTGTATGGTTTGATTGTGCTCTTTTTTTTGTATATATACTTGATGAATGTCACTGGATCTAGGATAGATCTGTATCTTTCCAAGTTTCTATCATTTGATACCAACTCAATTCTGTTATAAGTTTTGAAACGATCGTGGAGTGGCCTAGTAGTTAAGAGGGACTTGAGAACTAAATGTGTTCAATTCATGGTAGATGCCGATTTATAGGACATTTTTTCTTGACATCCAAATGTTGTTGGATTAGACAGTCTTATAAGTTTGTACAGTCACGAATATAAAAAAAATACATGCACATTATTAGGTGATTTTCTTAGATTGGTAGGCATTGTTTGTCAGCAAAACGAATTACCAAAAGGGAAATTAGACTTTCACTAGAGGTGGGTTGAAGTTTTATTTATACTCAAAACGTTTTATAGGGTGATATTCTTACTCTACCAATAATGTTTCAATAGGATGTTCTCTCACATATTGAGCTTCCAAACACCTCTTCGAGCTGTTCTTAAATTTTATCCCAACAATGTATTATTTATTAATTTTCCTCCTAATATATGTAGATGCATGCACATCATTCTTTTCATATTTATGATTAAAATCAAAGCAATTTGGATTCTTGTTCTTTGAAATGCATCCCATTAGATTGCGCTATTCCAATTGTTTTTGTTGAACTTGAACTAAAAAAAAGAAGAAATGCAAGTACAGGAAATAAATGGGACTTGGGAATATGTAAGTCTTTCTAGACTTATATCTATGAACGTCTGAGCCAGTTTACACGCACCTCAGTGATTCTTATAGGACAACCGCCTTACCCTATAACATTTGATTGTCCAAAAAATCATAGAAAATTACAGGTAGGGTAGCTACCATGGATTGAACCCATAACGATCTTGACCACCAGGTCAATCCATGATGATATTTCATCCAGACTATCTGAAAGCATTGATAGATTTAAAGTGAGACTTGTTGTCAAGGGATTTGTTTTTAATTCTGACTCCAAGTGTCCAACAATTACAAGATGTAGAATCGAACCATTGACCTTTGAGATTGTAATACTAATATATGAATATGTGGCTACGGGATTACTTAATCTAACCATGTGTAATAGATTACAAGGAAACATTTGTTCTAGTTGTTAAATGAAATACCATTTATGTATTCCTATCTATTCTTGTCTATCCATTCCTATAATCCAAGAATGAAATCTTCATCAACTTGATGAAAAAGGGGGCAACCTCAAAAAGAAGTTTACATGGAAATAGTCTTGAGAATGAGATAGAGGAAAGCAAACCTAAAATCTATGAACTTAGAAAGATCATAGAAACTTTAATTTGGAAATTGTTATTACAAACTAGATTTCTTAATCTTCTTGCTTCTTGCTTCTTGTGATGAATGAAACATGCATTTTATGTGAAAGCACATATTTTTGTTTGCTAATTATTAAATTGAGATATAGAATTATAAATGGCAGCCAAGATTATTACGTTTTGTTAGTCGGCTAAGCATCTAAGACTCAACCTCAAGAAATTATTAAACTTGACAATGTCGAGGTATATATGTAGCAAACTAACGGTCTCAATACTTGAATAACGATGAGTTTCACGGTTGAGACTTGCAGAGAAGAGAGAAAGGATGTCAAGTGGAAACACCCATTGGTGTTACAGATGTGAGCAGCCAATTCAACTTCGTGGGCAAGACATGGTTTGCCCAAGTTGTAATGGAGGATTTGTTCAAGAACTTGACGGAACGATGGAAAGAAGTCCCTTTGATTTCTTTGGAGCCAATGGTAATGAAAATCATAATCCTCGGCTCGGATTCTTGGATCTGTTCTCGAACTTTATGAGGCAACGAATGATAGACAGGAATGATATCAGGGGAAGGTTGGAATCAATTCCAGATCATGGTTCAGGGTTTGGTCCTTGGTTGATCTATGGTGGCCAAATTCCTGTTAGATTGTCTGGACATGGTGGGTTTGAAGCCTTTTTTAATGAGGTTCCTGGAATTGGTGTGAGTAGGAGCAATGGTGGTGATTATTTTGTTGGTCCTGGACTTGAAGAATTGTTTGAACAACTTTCAGCAAACGACCGACGTGGACCACCCCCAGCAGCTCGATCATCAATCGATGCAATGCCTGTTGTTAAAATCACACAACGGCATATCCGTTCAAATTCACACTGCCCTGTGTGCCAAGATAAATTCGAAATAGGGTCTGAAGCTAGGAAAATGCCATGTGAACATGTGTACCATTCAGATTGTATAGTTCCCTGGCTAGTCCAGCACAACTCCTGCCCTGTCTGCCGCCAAGAACTGCCTGCACAAGGTTCGGGTGGTAGCCACAGCTCGTCTGGAAACAACAATGTTAGTCGAAACAGCCGAGAGAGGGAGGATAGCAGTAGGACAAATCAAGGAAGGAGGAACCCGTTTTCAAGTTTTTGGCCATTTCGAGCATCAAGCTCTAACTCGAGCCATAGTACTACGACTGGAAGCAGCTCACCAGCCCTACACGAGAGCACCCAAAACCAAACGGGGTATTCTGGATGGCCTTTCGACTAAGCATCAACGGTGTGTTCAACTTGTTTGGACCAGTTTGTGATTGTGGTTTTAGCATGAACAAAATAGTTCAACCCCCATATGTCCCCACTCCTTTGTATAATGACAAATAATGGACTTTTTGTGTGATGTAGATGATATTTGTCTATGCCTTATTTGATGCTGCTGTAGTTTGTACATGCTTCGTATGTATTAGCATGTTGTTTCGGTTTCGAGATTGCTTGCATCTTGAAATTTTCTGTCCATGTTACAATTTCCACATCTTCAAACAAAAGTTGATACTTGTGAAACTGGCTAATCCAATCTCTA

mRNA sequence

GGATTCCACCCTCATCTTCCTGTTCAGCGAATAAATTCCATTATTTTCAGTCTCACCCAATTAATTCAGCTTTAGGGTTCATTCCCATCTTCTCTCCCCTGCTGCTACTTCAATACATTCCTTCCCCTTTTCCTTCAATTCTCAAGAGAAGAGAGAAAGGATGTCAAGTGGAAACACCCATTGGTGTTACAGATGTGAGCAGCCAATTCAACTTCGTGGGCAAGACATGGTTTGCCCAAGTTGTAATGGAGGATTTGTTCAAGAACTTGACGGAACGATGGAAAGAAGTCCCTTTGATTTCTTTGGAGCCAATGGTAATGAAAATCATAATCCTCGGCTCGGATTCTTGGATCTGTTCTCGAACTTTATGAGGCAACGAATGATAGACAGGAATGATATCAGGGGAAGGTTGGAATCAATTCCAGATCATGGTTCAGGGTTTGGTCCTTGGTTGATCTATGGTGGCCAAATTCCTGTTAGATTGTCTGGACATGGTGGGTTTGAAGCCTTTTTTAATGAGGTTCCTGGAATTGGTGTGAGTAGGAGCAATGGTGGTGATTATTTTGTTGGTCCTGGACTTGAAGAATTGTTTGAACAACTTTCAGCAAACGACCGACGTGGACCACCCCCAGCAGCTCGATCATCAATCGATGCAATGCCTGTTGTTAAAATCACACAACGGCATATCCGTTCAAATTCACACTGCCCTGTGTGCCAAGATAAATTCGAAATAGGGTCTGAAGCTAGGAAAATGCCATGTGAACATGTGTACCATTCAGATTGTATAGTTCCCTGGCTAGTCCAGCACAACTCCTGCCCTGTCTGCCGCCAAGAACTGCCTGCACAAGGTTCGGGTGGTAGCCACAGCTCGTCTGGAAACAACAATGTTAGTCGAAACAGCCGAGAGAGGGAGGATAGCAGTAGGACAAATCAAGGAAGGAGGAACCCGTTTTCAAGTTTTTGGCCATTTCGAGCATCAAGCTCTAACTCGAGCCATAGTACTACGACTGGAAGCAGCTCACCAGCCCTACACGAGAGCACCCAAAACCAAACGGGGTATTCTGGATGGCCTTTCGACTAAGCATCAACGGTGTGTTCAACTTGTTTGGACCAGTTTGTGATTGTGGTTTTAGCATGAACAAAATAGTTCAACCCCCATATGTCCCCACTCCTTTGTATAATGACAAATAATGGACTTTTTGTGTGATGTAGATGATATTTGTCTATGCCTTATTTGATGCTGCTGTAGTTTGTACATGCTTCGTATGTATTAGCATGTTGTTTCGGTTTCGAGATTGCTTGCATCTTGAAATTTTCTGTCCATGTTACAATTTCCACATCTTCAAACAAAAGTTGATACTTGTGAAACTGGCTAATCCAATCTCTA

Coding sequence (CDS)

ATGTCAAGTGGAAACACCCATTGGTGTTACAGATGTGAGCAGCCAATTCAACTTCGTGGGCAAGACATGGTTTGCCCAAGTTGTAATGGAGGATTTGTTCAAGAACTTGACGGAACGATGGAAAGAAGTCCCTTTGATTTCTTTGGAGCCAATGGTAATGAAAATCATAATCCTCGGCTCGGATTCTTGGATCTGTTCTCGAACTTTATGAGGCAACGAATGATAGACAGGAATGATATCAGGGGAAGGTTGGAATCAATTCCAGATCATGGTTCAGGGTTTGGTCCTTGGTTGATCTATGGTGGCCAAATTCCTGTTAGATTGTCTGGACATGGTGGGTTTGAAGCCTTTTTTAATGAGGTTCCTGGAATTGGTGTGAGTAGGAGCAATGGTGGTGATTATTTTGTTGGTCCTGGACTTGAAGAATTGTTTGAACAACTTTCAGCAAACGACCGACGTGGACCACCCCCAGCAGCTCGATCATCAATCGATGCAATGCCTGTTGTTAAAATCACACAACGGCATATCCGTTCAAATTCACACTGCCCTGTGTGCCAAGATAAATTCGAAATAGGGTCTGAAGCTAGGAAAATGCCATGTGAACATGTGTACCATTCAGATTGTATAGTTCCCTGGCTAGTCCAGCACAACTCCTGCCCTGTCTGCCGCCAAGAACTGCCTGCACAAGGTTCGGGTGGTAGCCACAGCTCGTCTGGAAACAACAATGTTAGTCGAAACAGCCGAGAGAGGGAGGATAGCAGTAGGACAAATCAAGGAAGGAGGAACCCGTTTTCAAGTTTTTGGCCATTTCGAGCATCAAGCTCTAACTCGAGCCATAGTACTACGACTGGAAGCAGCTCACCAGCCCTACACGAGAGCACCCAAAACCAAACGGGGTATTCTGGATGGCCTTTCGACTAA

Protein sequence

MSSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRLGFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEAFFNEVPGIGVSRSNGGDYFVGPGLEELFEQLSANDRRGPPPAARSSIDAMPVVKITQRHIRSNSHCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGNNNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHSTTTGSSSPALHESTQNQTGYSGWPFD

Homology

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BLAST of Sed0013028 vs. NCBI nr
Match: KAG7028452.1 (putative E3 ubiquitin-protein ligase RHC1A, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 580.9 bits (1496), Expect = 6.6e-162
Identity = 275/306 (89.87%), Postives = 293/306 (95.75%), Query Frame = 0


Query: 1   MSSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRL 60
           MSS NTHWCYRCEQP+QLRG+DMVC SCNGGFVQELD  MER P DFFGANG+E HN RL
Sbjct: 1   MSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRL 60

Query: 61  GFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEAFFNE 120
           G L+LFSNFMRQR+IDRND+RGRLESIPDHGSGFGPWLI+GGQIPVRLSGHGGFEAFFN 
Sbjct: 61  GLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 121 VPGIGVSRSNGGDYFVGPGLEELFEQLSANDRRGPPPAARSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSRSNGGDYF+GPGLEELFEQLSANDRRGPPPA+RSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 181 HCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGN 240
           HCPVCQDKFE+GSEARKMPC+H+YHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSG+
Sbjct: 181 HCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGS 240

Query: 241 NNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHSTTTGSSSPALHESTQNQTGY 300
           NN+SRNSRERE +SRTNQGRRNPFSS WPFRASSS+S+HS TTGSSSPALHESTQ+QTGY
Sbjct: 241 NNLSRNSRERE-NSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQTGY 300

Query: 301 SGWPFD 307
           SGWPFD
Sbjct: 301 SGWPFD 305

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BLAST of Sed0013028 vs. NCBI nr
Match: XP_022974705.1 (probable E3 ubiquitin-protein ligase RHC1A isoform X1 [Cucurbita maxima] >XP_022974706.1 probable E3 ubiquitin-protein ligase RHC1A isoform X2 [Cucurbita maxima] >XP_022974707.1 probable E3 ubiquitin-protein ligase RHC1A isoform X3 [Cucurbita maxima] >XP_022974708.1 probable E3 ubiquitin-protein ligase RHC1A isoform X4 [Cucurbita maxima] >XP_022975226.1 probable E3 ubiquitin-protein ligase RHC1A [Cucurbita maxima])

HSP 1 Score: 579.3 bits (1492), Expect = 1.9e-161
Identity = 274/306 (89.54%), Postives = 293/306 (95.75%), Query Frame = 0


Query: 1   MSSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRL 60
           MSS NTHWCYRCEQP+QLRG+DMVC SCNGGFVQELD  MER P DFFGA+G+E HN RL
Sbjct: 1   MSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGAHGHEYHNRRL 60

Query: 61  GFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEAFFNE 120
           G LDLFSNFMRQR+IDRND+RGRLESIPDHGSGFGPWLI+GGQIPVRLSGHGGFEAFFN 
Sbjct: 61  GLLDLFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 121 VPGIGVSRSNGGDYFVGPGLEELFEQLSANDRRGPPPAARSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSR+NGGDYF+GPGLEELFEQLSANDRRGPPPA+RSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRNNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 181 HCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGN 240
           HCPVCQDKFE+GSEARKMPC+H+YHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSG+
Sbjct: 181 HCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGS 240

Query: 241 NNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHSTTTGSSSPALHESTQNQTGY 300
           NN+SRNSRERE +SRTNQGRRNPFSS WPFRASSS+S+HS TTGSSSPALHESTQ+QTGY
Sbjct: 241 NNLSRNSRERE-NSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQTGY 300

Query: 301 SGWPFD 307
           SGWPFD
Sbjct: 301 SGWPFD 305

[Close]

BLAST of Sed0013028 vs. NCBI nr
Match: XP_023539608.1 (probable E3 ubiquitin-protein ligase RHC1A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 578.6 bits (1490), Expect = 3.3e-161
Identity = 273/306 (89.22%), Postives = 293/306 (95.75%), Query Frame = 0


Query: 1   MSSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRL 60
           MSS NTHWCYRCEQP+QLRG+DMVC SCNGGFVQELD  MER P DFFGANG+E HN RL
Sbjct: 1   MSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGANGHEYHNRRL 60

Query: 61  GFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEAFFNE 120
           G L+LFSNFMRQR+IDRND+RGRLESIPDHGSGFGPWLI+GGQIPVRLSGHGGFEAFFN 
Sbjct: 61  GLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 121 VPGIGVSRSNGGDYFVGPGLEELFEQLSANDRRGPPPAARSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSRSNGGDYF+GPGLEELFEQLSANDRRGPPPA+RSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 181 HCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGN 240
           HCPVCQDKFE+GSEARKMPC+H+YHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSG+
Sbjct: 181 HCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGS 240

Query: 241 NNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHSTTTGSSSPALHESTQNQTGY 300
           NN++RNSRERE +SRTNQGRRNPFSS WPFRASSS+S+HS TTGSSSPA+HESTQ+QTGY
Sbjct: 241 NNLNRNSRERE-NSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPAVHESTQHQTGY 300

Query: 301 SGWPFD 307
           SGWPFD
Sbjct: 301 SGWPFD 305

[Close]

BLAST of Sed0013028 vs. NCBI nr
Match: XP_022940469.1 (probable E3 ubiquitin-protein ligase RHC1A [Cucurbita moschata])

HSP 1 Score: 577.4 bits (1487), Expect = 7.3e-161
Identity = 273/306 (89.22%), Postives = 292/306 (95.42%), Query Frame = 0


Query: 1   MSSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRL 60
           MSS NTHWCYRCEQP+QLRG+DMVC SCNGGFVQELD  MER P DFFGANG+E HN RL
Sbjct: 1   MSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRL 60

Query: 61  GFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEAFFNE 120
           G L+LFSNFMRQR+IDRND+RGRLESIPDHGSGFGPWLI+GGQIPVRLSGHGGFEAFFN 
Sbjct: 61  GLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 121 VPGIGVSRSNGGDYFVGPGLEELFEQLSANDRRGPPPAARSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSRSNGGDYF+GPGLEELFEQLSANDRRGPPPA+RSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 181 HCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGN 240
           HCPVCQDKFE+G+EARKMPC+H+YHSDCIVPWLVQHNSCPVCRQELPAQGSGG HSSSG+
Sbjct: 181 HCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGIHSSSGS 240

Query: 241 NNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHSTTTGSSSPALHESTQNQTGY 300
           NN+SRNSRERE +SRTNQGRRNPFSS WPFRASSS+S+HS TTGSSSPALHESTQ+QTGY
Sbjct: 241 NNLSRNSRERE-NSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQTGY 300

Query: 301 SGWPFD 307
           SGWPFD
Sbjct: 301 SGWPFD 305

[Close]

BLAST of Sed0013028 vs. NCBI nr
Match: XP_038904133.1 (probable E3 ubiquitin-protein ligase RHC1A isoform X1 [Benincasa hispida])

HSP 1 Score: 560.8 bits (1444), Expect = 7.1e-156
Identity = 263/306 (85.95%), Postives = 287/306 (93.79%), Query Frame = 0


Query: 1   MSSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRL 60
           MS+GNTHWCYRCEQP++LRG+DM+CPSCNGGFVQELD  MERSPFD F A+GNE  N RL
Sbjct: 34  MSTGNTHWCYRCEQPVRLRGRDMICPSCNGGFVQELDEMMERSPFDLFEASGNEYQNRRL 93

Query: 61  GFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEAFFNE 120
           G L+LFSNFMRQRM+DRND+RGRLESIPDHG GFGPWLI+GGQIPVR+SGHGGFEAFFN 
Sbjct: 94  GLLELFSNFMRQRMVDRNDMRGRLESIPDHGPGFGPWLIFGGQIPVRMSGHGGFEAFFNG 153

Query: 121 VPGIGVSRSNGGDYFVGPGLEELFEQLSANDRRGPPPAARSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSRSNGGDYF+GPGLEELFEQLSANDRRGPPPA+RSSIDAMPVVKITQRHIRSNS
Sbjct: 154 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 213

Query: 181 HCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGN 240
           HCPVCQDKFE+GSEAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELPAQGS  SHSSSG+
Sbjct: 214 HCPVCQDKFELGSEARQMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSVSSHSSSGS 273

Query: 241 NNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHSTTTGSSSPALHESTQNQTGY 300
           NN SRNSR+RE +SRT+QGRRNPF+S WPFRASSSNS+H  TTGSSSPALHES Q+QTGY
Sbjct: 274 NNSSRNSRDRE-NSRTSQGRRNPFTSIWPFRASSSNSNHGATTGSSSPALHESNQHQTGY 333

Query: 301 SGWPFD 307
            GWPFD
Sbjct: 334 YGWPFD 338

[Close]

BLAST of Sed0013028 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 8.5e-88
Identity = 178/328 (54.27%), Postives = 222/328 (67.68%), Query Frame = 0


Query: 2   SSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGAN-GNENHNPRL 61
           SS NTHWC+RC++ ++L GQ+ VC  C GGFV+ELD   + SPFD F ++ G    +   
Sbjct: 3   SSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELD-MAQASPFDMFRSHRGVVERDQTF 62

Query: 62  GFLDLFSNFMRQRMIDRN---DIRGR-LESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEA 121
             +D FS FMR R+ +R+   +IRGR + S P++  G  P LI+GGQ+P RL+G    EA
Sbjct: 63  DLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAVEA 122

Query: 122 FFN-EVPGIGVSRSNGGDYFVGPGLEELFEQLSA-NDRRGPPPAARSSIDAMPVVKITQR 181
            FN   PGIG++R N GDYF GPGLEELFEQLSA   RRGPPPA RS+IDA+P +KI QR
Sbjct: 123 LFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQR 182

Query: 182 HIR-SNSHCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGG 241
           H+R S+S+CPVC+D+FE+GSEA++MPC H+YHSDCIVPWLVQHNSCPVCRQELP+  + G
Sbjct: 183 HLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPS--ASG 242

Query: 242 SHSSSGNNNVSRNSREREDSSRTN-----QGRRNPFSSFWPFRASSSNSSHS-----TTT 301
             SS      +RN R    SS +N       RRNPFSSFWPFR+S S+SS +     T  
Sbjct: 243 PSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRGGTRN 302

Query: 302 GSSSPALHESTQNQ-----TGYSGWPFD 307
             +S   H   Q Q      GYSGWPFD
Sbjct: 303 SDTSDENHNYHQQQHQQSYMGYSGWPFD 327

[Close]

BLAST of Sed0013028 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.4e-77
Identity = 161/330 (48.79%), Postives = 211/330 (63.94%), Query Frame = 0


Query: 5   NTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRLGFLD 64
           NTHWC+RC++ + LR +D VC  C GGFV+E+D    R       A+ +   +P    ++
Sbjct: 6   NTHWCHRCQRAVWLRARDAVCSYCGGGFVEEIDIGPSR-------AHRDVERDPTFDLME 65

Query: 65  LFSNFMRQRMIDRN---DIRGRLESIPDHG-SGFGPWLIYGGQIPVRLSG--HGGFEAFF 124
            FS FMR R+ +R+   +I GRL S      S   P LI+GGQ P RL+G  +   EAF 
Sbjct: 66  AFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAGGDNSSVEAFV 125

Query: 125 N-EVPGIGVSR-SNGGDYFVGPGLEELFEQLSA-NDRRGPPPAARSSIDAMPVVKITQRH 184
           N   PGIG++R +N GDYF GPGLEEL EQLS+    RGPPPA +SSIDA+P +KITQ+H
Sbjct: 126 NGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIKITQKH 185

Query: 185 IR-SNSHCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGS 244
           ++ S+SHCPVC+D+FE+ SEA++MPC H+YHSDCIVPWLVQHNSCPVCR+ELP++GS  S
Sbjct: 186 LKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSRGSSSS 245

Query: 245 HSSSGNNNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHS-TTTGSSSPA---- 304
             SS N         R  + R N  RRN FS+ WPFR+SSS+S+ +   T +++ A    
Sbjct: 246 TQSSQN---------RSTNGRENSRRRNIFSNLWPFRSSSSSSTQNRRDTNNTATAEEGH 305

Query: 305 -------------LHESTQNQTGYSGWPFD 307
                         H+  Q+  GYSGWPFD
Sbjct: 306 YHHHQQQQQQHQHQHQQQQSHMGYSGWPFD 319

[Close]

BLAST of Sed0013028 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.1e-37
Identity = 103/297 (34.68%), Postives = 145/297 (48.82%), Query Frame = 0


Query: 8   WCYRCEQPIQLR----GQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNE--NHNPRLG 67
           +CY+C + + +       D  CP CN GF++E D         F   N N    H+  L 
Sbjct: 24  FCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSIPFHDLFLT 83

Query: 68  FLDLFSNFM-------------RQRMIDRND--IRGRLESIPDHGSGFGPWLIYGGQIPV 127
             D F++ +                 ID N+  + G   S       F P+      +  
Sbjct: 84  LSDPFASLLPLLFPSSSSTTTSSSASIDPNNPSLSGPTRSGRGDPFAFDPFTFIQNHLND 143

Query: 128 RLSGHGGFEAFFNEVPGIGVSR--SNGGDYFVGPGLEELFEQLSAND--RRGPPPAARSS 187
             S     E      P     R  +N GDYF+GPGLE+L +QL+ ND  R G PPA++S+
Sbjct: 144 LRSSGAQIEFVIQNNPSDQGFRLPANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSA 203

Query: 188 IDAMPVVKITQRHIRSN-SHCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPV 247
           I+A+P+V IT+ ++ S  + C VC D FE G+EA++MPC+H+YH DC++PWL  HNSCPV
Sbjct: 204 IEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPV 263

Query: 248 CRQELPAQGSG------GSHSSSGNNNVSRNSREREDSSRTNQGRRNPFSSFWPFRA 273
           CR ELP           G+  +SG N+   NS +R D       R    S  WPF+A
Sbjct: 264 CRHELPTDDPDYERRVRGAQGTSGGND-GDNSGQRSDGDNRTVERSFRISLPWPFQA 319

[Close]

BLAST of Sed0013028 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-35
Identity = 100/307 (32.57%), Postives = 144/307 (46.91%), Query Frame = 0


Query: 8   WCYRCEQPIQL---RGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPR----- 67
           +CY+C Q + +      D  CP CN GF++E +        + F  N +++  P      
Sbjct: 22  FCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLN-FNPNSSDSFFPMADPFS 81

Query: 68  ----------------LGFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQ 127
                           + F+ LF   M+         + R          F P+      
Sbjct: 82  TLLPLIFGSSAAAPSGMDFMSLFGPSMQP--------QARSTQQNPQSDAFDPFTFLQNH 141

Query: 128 IPVRLSGHGGFEAFFNEVPGIGVSR--SNGGDYFVGPGLEELFEQLSAND--RRGPPPAA 187
           +    S    FE      P    +R   N GDYF GPGLE+L +QL+ ND  R G PPA+
Sbjct: 142 LQTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPNRYGTPPAS 201

Query: 188 RSSIDAMPVVKITQRHIRSN-SHCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNS 247
           +S+IDA+P VK+T+  ++S  + C VC D+FE GS+ ++MPC+HV+H DC++PWL  HNS
Sbjct: 202 KSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNS 261

Query: 248 CPVCRQELPAQGSGGSHSSSGNNNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSS 286
           CPVCR ELP       + S G    S+ S + + S    Q  R      WPFR    + S
Sbjct: 262 CPVCRFELPTDDPDYENRSQG----SQGSGDGQGSVEGQQTPRFSIQLPWPFRRQDGSGS 315

[Close]

BLAST of Sed0013028 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 8.1e-30
Identity = 81/243 (33.33%), Postives = 129/243 (53.09%), Query Frame = 0


Query: 6   THWCYRCEQPIQL-RGQD----MVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRL 65
           ++WCY C + I +   QD    ++CP CNGGF++E++ +   S      A+  E  +   
Sbjct: 30  SYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDS-SNSTVAAIPASTPEVRSVE- 89

Query: 66  GFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQIPVRLSGHG------GF 125
              +   + +R+R  +R      +  I  HG G G      G+      G G       +
Sbjct: 90  ---ETHRSIIRRRRSNRRTSFNPV--IVLHGGGGGG----AGERVENEEGDGATRERRAY 149

Query: 126 EAFFNEVPGIGVS--RSNGGDYFVGPGLEELFEQLSAND-------RRGPPPAARSSIDA 185
           E ++++  G G+     +  +  +G G E L EQLS  +       R G PPA++S+I++
Sbjct: 150 EFYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASGNGIGRSGNPPASKSAIES 209

Query: 186 MPVVKITQRHIRSNSHCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQE 229
           +P V+I+  H ++ ++C VC + FE G E R+MPC+H++H DCIVPWL   NSCPVCR E
Sbjct: 210 LPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFE 261

[Close]

BLAST of Sed0013028 vs. ExPASy TrEMBL
Match: A0A6J1IB00 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111473444 PE=4 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 9.3e-162
Identity = 274/306 (89.54%), Postives = 293/306 (95.75%), Query Frame = 0


Query: 1   MSSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRL 60
           MSS NTHWCYRCEQP+QLRG+DMVC SCNGGFVQELD  MER P DFFGA+G+E HN RL
Sbjct: 1   MSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERGPLDFFGAHGHEYHNRRL 60

Query: 61  GFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEAFFNE 120
           G LDLFSNFMRQR+IDRND+RGRLESIPDHGSGFGPWLI+GGQIPVRLSGHGGFEAFFN 
Sbjct: 61  GLLDLFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 121 VPGIGVSRSNGGDYFVGPGLEELFEQLSANDRRGPPPAARSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSR+NGGDYF+GPGLEELFEQLSANDRRGPPPA+RSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRNNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 181 HCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGN 240
           HCPVCQDKFE+GSEARKMPC+H+YHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSG+
Sbjct: 181 HCPVCQDKFELGSEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGS 240

Query: 241 NNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHSTTTGSSSPALHESTQNQTGY 300
           NN+SRNSRERE +SRTNQGRRNPFSS WPFRASSS+S+HS TTGSSSPALHESTQ+QTGY
Sbjct: 241 NNLSRNSRERE-NSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQTGY 300

Query: 301 SGWPFD 307
           SGWPFD
Sbjct: 301 SGWPFD 305

[Close]

BLAST of Sed0013028 vs. ExPASy TrEMBL
Match: A0A6J1FK80 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111446055 PE=4 SV=1)

HSP 1 Score: 577.4 bits (1487), Expect = 3.5e-161
Identity = 273/306 (89.22%), Postives = 292/306 (95.42%), Query Frame = 0


Query: 1   MSSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRL 60
           MSS NTHWCYRCEQP+QLRG+DMVC SCNGGFVQELD  MER P DFFGANG+E HN RL
Sbjct: 1   MSSRNTHWCYRCEQPVQLRGRDMVCASCNGGFVQELDEMMERDPLDFFGANGHEYHNRRL 60

Query: 61  GFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEAFFNE 120
           G L+LFSNFMRQR+IDRND+RGRLESIPDHGSGFGPWLI+GGQIPVRLSGHGGFEAFFN 
Sbjct: 61  GLLELFSNFMRQRLIDRNDMRGRLESIPDHGSGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 121 VPGIGVSRSNGGDYFVGPGLEELFEQLSANDRRGPPPAARSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSRSNGGDYF+GPGLEELFEQLSANDRRGPPPA+RSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 181 HCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGN 240
           HCPVCQDKFE+G+EARKMPC+H+YHSDCIVPWLVQHNSCPVCRQELPAQGSGG HSSSG+
Sbjct: 181 HCPVCQDKFELGTEARKMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGGIHSSSGS 240

Query: 241 NNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHSTTTGSSSPALHESTQNQTGY 300
           NN+SRNSRERE +SRTNQGRRNPFSS WPFRASSS+S+HS TTGSSSPALHESTQ+QTGY
Sbjct: 241 NNLSRNSRERE-NSRTNQGRRNPFSSLWPFRASSSDSNHSATTGSSSPALHESTQHQTGY 300

Query: 301 SGWPFD 307
           SGWPFD
Sbjct: 301 SGWPFD 305

[Close]

BLAST of Sed0013028 vs. ExPASy TrEMBL
Match: A0A5A7UFI3 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006970 PE=4 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 2.4e-154
Identity = 260/306 (84.97%), Postives = 284/306 (92.81%), Query Frame = 0


Query: 1   MSSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRL 60
           MS+GNTHWCYRCEQP++LRG+DM C SCNGGFVQELD  MERSP D FGA+GNE  N RL
Sbjct: 1   MSTGNTHWCYRCEQPVRLRGRDMTCLSCNGGFVQELDEMMERSPLDLFGASGNEYQNRRL 60

Query: 61  GFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEAFFNE 120
           G L+LFSNFMRQRM+DRNDIRGRL+SIPDHG GFGPWLI+GGQIPVRLSGHGGFEAFFN 
Sbjct: 61  GLLELFSNFMRQRMVDRNDIRGRLDSIPDHGPGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 121 VPGIGVSRSNGGDYFVGPGLEELFEQLSANDRRGPPPAARSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSRSNGGDYF+GPGLEELFEQLSANDRRGPPPA+RSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 181 HCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGN 240
           HCPVCQDKFE+GSEAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELPAQGS  SHSSSG+
Sbjct: 181 HCPVCQDKFELGSEARQMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSSSSHSSSGS 240

Query: 241 NNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHSTTTGSSSPALHESTQNQTGY 300
           NN SRNSR+RE +SRT QGRRNPF+S WPFRASSSNS+H  TTGS+SPALHE+ Q++TGY
Sbjct: 241 NNSSRNSRDRE-NSRTTQGRRNPFTSLWPFRASSSNSNHGATTGSNSPALHETNQHETGY 300

Query: 301 SGWPFD 307
            GWPFD
Sbjct: 301 YGWPFD 305

[Close]

BLAST of Sed0013028 vs. ExPASy TrEMBL
Match: A0A1S3B774 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103486912 PE=4 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 2.4e-154
Identity = 260/306 (84.97%), Postives = 284/306 (92.81%), Query Frame = 0


Query: 1   MSSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRL 60
           MS+GNTHWCYRCEQP++LRG+DM C SCNGGFVQELD  MERSP D FGA+GNE  N RL
Sbjct: 1   MSTGNTHWCYRCEQPVRLRGRDMTCLSCNGGFVQELDEMMERSPLDLFGASGNEYQNRRL 60

Query: 61  GFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEAFFNE 120
           G L+LFSNFMRQRM+DRNDIRGRL+SIPDHG GFGPWLI+GGQIPVRLSGHGGFEAFFN 
Sbjct: 61  GLLELFSNFMRQRMVDRNDIRGRLDSIPDHGPGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 121 VPGIGVSRSNGGDYFVGPGLEELFEQLSANDRRGPPPAARSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSRSNGGDYF+GPGLEELFEQLSANDRRGPPPA+RSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 181 HCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGN 240
           HCPVCQDKFE+GSEAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELPAQGS  SHSSSG+
Sbjct: 181 HCPVCQDKFELGSEARQMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSSSSHSSSGS 240

Query: 241 NNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHSTTTGSSSPALHESTQNQTGY 300
           NN SRNSR+RE +SRT QGRRNPF+S WPFRASSSNS+H  TTGS+SPALHE+ Q++TGY
Sbjct: 241 NNSSRNSRDRE-NSRTTQGRRNPFTSLWPFRASSSNSNHGATTGSNSPALHETNQHETGY 300

Query: 301 SGWPFD 307
            GWPFD
Sbjct: 301 YGWPFD 305

[Close]

BLAST of Sed0013028 vs. ExPASy TrEMBL
Match: A0A0A0LCH6 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G822250 PE=4 SV=1)

HSP 1 Score: 553.5 bits (1425), Expect = 5.5e-154
Identity = 259/306 (84.64%), Postives = 284/306 (92.81%), Query Frame = 0


Query: 1   MSSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRL 60
           MS+ NTHWCYRCEQP++LRG+DM C SCNGGFVQELD  MERSP D FGA+GNE  N RL
Sbjct: 1   MSTANTHWCYRCEQPVRLRGRDMTCLSCNGGFVQELDEMMERSPLDLFGASGNEYQNRRL 60

Query: 61  GFLDLFSNFMRQRMIDRNDIRGRLESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEAFFNE 120
           G L+LFSNFMRQR++DRNDIRGRL+SIPDHG GFGPWLI+GGQIPVRLSGHGGFEAFFN 
Sbjct: 61  GLLELFSNFMRQRLVDRNDIRGRLDSIPDHGPGFGPWLIFGGQIPVRLSGHGGFEAFFNG 120

Query: 121 VPGIGVSRSNGGDYFVGPGLEELFEQLSANDRRGPPPAARSSIDAMPVVKITQRHIRSNS 180
           VPGIGVSRSNGGDYF+GPGLEELFEQLSANDRRGPPPA+RSSIDAMPVVKITQRHIRSNS
Sbjct: 121 VPGIGVSRSNGGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPVVKITQRHIRSNS 180

Query: 181 HCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGSHSSSGN 240
           HCPVCQDKFE+GSEAR+MPC+H+YHSDCIVPWLVQHNSCPVCRQELPAQGSG SHSSSG+
Sbjct: 181 HCPVCQDKFELGSEARQMPCDHMYHSDCIVPWLVQHNSCPVCRQELPAQGSGSSHSSSGS 240

Query: 241 NNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHSTTTGSSSPALHESTQNQTGY 300
           NN SRNSR+RE + RT QGRRNPF+S WPFRASSSNS+HS TTGS+SPALHE+ Q++TGY
Sbjct: 241 NNSSRNSRDRE-NGRTTQGRRNPFTSLWPFRASSSNSNHSATTGSNSPALHETNQHETGY 300

Query: 301 SGWPFD 307
            GWPFD
Sbjct: 301 YGWPFD 305

[Close]

BLAST of Sed0013028 vs. TAIR 10
Match: AT2G40830.2 (RING-H2 finger C1A )

HSP 1 Score: 325.1 bits (832), Expect = 6.1e-89
Identity = 178/328 (54.27%), Postives = 222/328 (67.68%), Query Frame = 0


Query: 2   SSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGAN-GNENHNPRL 61
           SS NTHWC+RC++ ++L GQ+ VC  C GGFV+ELD   + SPFD F ++ G    +   
Sbjct: 3   SSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELD-MAQASPFDMFRSHRGVVERDQTF 62

Query: 62  GFLDLFSNFMRQRMIDRN---DIRGR-LESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEA 121
             +D FS FMR R+ +R+   +IRGR + S P++  G  P LI+GGQ+P RL+G    EA
Sbjct: 63  DLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAVEA 122

Query: 122 FFN-EVPGIGVSRSNGGDYFVGPGLEELFEQLSA-NDRRGPPPAARSSIDAMPVVKITQR 181
            FN   PGIG++R N GDYF GPGLEELFEQLSA   RRGPPPA RS+IDA+P +KI QR
Sbjct: 123 LFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQR 182

Query: 182 HIR-SNSHCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGG 241
           H+R S+S+CPVC+D+FE+GSEA++MPC H+YHSDCIVPWLVQHNSCPVCRQELP+  + G
Sbjct: 183 HLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPS--ASG 242

Query: 242 SHSSSGNNNVSRNSREREDSSRTN-----QGRRNPFSSFWPFRASSSNSSHS-----TTT 301
             SS      +RN R    SS +N       RRNPFSSFWPFR+S S+SS +     T  
Sbjct: 243 PSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRGGTRN 302

Query: 302 GSSSPALHESTQNQ-----TGYSGWPFD 307
             +S   H   Q Q      GYSGWPFD
Sbjct: 303 SDTSDENHNYHQQQHQQSYMGYSGWPFD 327

[Close]

BLAST of Sed0013028 vs. TAIR 10
Match: AT2G40830.1 (RING-H2 finger C1A )

HSP 1 Score: 325.1 bits (832), Expect = 6.1e-89
Identity = 178/328 (54.27%), Postives = 222/328 (67.68%), Query Frame = 0


Query: 2   SSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGAN-GNENHNPRL 61
           SS NTHWC+RC++ ++L GQ+ VC  C GGFV+ELD   + SPFD F ++ G    +   
Sbjct: 3   SSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELD-MAQASPFDMFRSHRGVVERDQTF 62

Query: 62  GFLDLFSNFMRQRMIDRN---DIRGR-LESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEA 121
             +D FS FMR R+ +R+   +IRGR + S P++  G  P LI+GGQ+P RL+G    EA
Sbjct: 63  DLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAVEA 122

Query: 122 FFN-EVPGIGVSRSNGGDYFVGPGLEELFEQLSA-NDRRGPPPAARSSIDAMPVVKITQR 181
            FN   PGIG++R N GDYF GPGLEELFEQLSA   RRGPPPA RS+IDA+P +KI QR
Sbjct: 123 LFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQR 182

Query: 182 HIR-SNSHCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGG 241
           H+R S+S+CPVC+D+FE+GSEA++MPC H+YHSDCIVPWLVQHNSCPVCRQELP+  + G
Sbjct: 183 HLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPS--ASG 242

Query: 242 SHSSSGNNNVSRNSREREDSSRTN-----QGRRNPFSSFWPFRASSSNSSHS-----TTT 301
             SS      +RN R    SS +N       RRNPFSSFWPFR+S S+SS +     T  
Sbjct: 243 PSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRGGTRN 302

Query: 302 GSSSPALHESTQNQ-----TGYSGWPFD 307
             +S   H   Q Q      GYSGWPFD
Sbjct: 303 SDTSDENHNYHQQQHQQSYMGYSGWPFD 327

[Close]

BLAST of Sed0013028 vs. TAIR 10
Match: AT2G40830.3 (RING-H2 finger C1A )

HSP 1 Score: 325.1 bits (832), Expect = 6.1e-89
Identity = 178/328 (54.27%), Postives = 222/328 (67.68%), Query Frame = 0


Query: 2   SSGNTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGAN-GNENHNPRL 61
           SS NTHWC+RC++ ++L GQ+ VC  C GGFV+ELD   + SPFD F ++ G    +   
Sbjct: 3   SSRNTHWCHRCQRAVRLHGQEPVCFYCGGGFVEELD-MAQASPFDMFRSHRGVVERDQTF 62

Query: 62  GFLDLFSNFMRQRMIDRN---DIRGR-LESIPDHGSGFGPWLIYGGQIPVRLSGHGGFEA 121
             +D FS FMR R+ +R+   +IRGR + S P++  G  P LI+GGQ+P RL+G    EA
Sbjct: 63  DLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDNAVEA 122

Query: 122 FFN-EVPGIGVSRSNGGDYFVGPGLEELFEQLSA-NDRRGPPPAARSSIDAMPVVKITQR 181
            FN   PGIG++R N GDYF GPGLEELFEQLSA   RRGPPPA RS+IDA+P +KI QR
Sbjct: 123 LFNGGSPGIGITRGNTGDYFFGPGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQR 182

Query: 182 HIR-SNSHCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGG 241
           H+R S+S+CPVC+D+FE+GSEA++MPC H+YHSDCIVPWLVQHNSCPVCRQELP+  + G
Sbjct: 183 HLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCRQELPS--ASG 242

Query: 242 SHSSSGNNNVSRNSREREDSSRTN-----QGRRNPFSSFWPFRASSSNSSHS-----TTT 301
             SS      +RN R    SS +N       RRNPFSSFWPFR+S S+SS +     T  
Sbjct: 243 PSSSQNRTTPTRNYRSSSSSSSSNSRENGNERRNPFSSFWPFRSSGSSSSSTQNRGGTRN 302

Query: 302 GSSSPALHESTQNQ-----TGYSGWPFD 307
             +S   H   Q Q      GYSGWPFD
Sbjct: 303 SDTSDENHNYHQQQHQQSYMGYSGWPFD 327

[Close]

BLAST of Sed0013028 vs. TAIR 10
Match: AT3G56580.2 (RING/U-box superfamily protein )

HSP 1 Score: 291.2 bits (744), Expect = 9.7e-79
Identity = 161/330 (48.79%), Postives = 211/330 (63.94%), Query Frame = 0


Query: 5   NTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRLGFLD 64
           NTHWC+RC++ + LR +D VC  C GGFV+E+D    R       A+ +   +P    ++
Sbjct: 6   NTHWCHRCQRAVWLRARDAVCSYCGGGFVEEIDIGPSR-------AHRDVERDPTFDLME 65

Query: 65  LFSNFMRQRMIDRN---DIRGRLESIPDHG-SGFGPWLIYGGQIPVRLSG--HGGFEAFF 124
            FS FMR R+ +R+   +I GRL S      S   P LI+GGQ P RL+G  +   EAF 
Sbjct: 66  AFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAGGDNSSVEAFV 125

Query: 125 N-EVPGIGVSR-SNGGDYFVGPGLEELFEQLSA-NDRRGPPPAARSSIDAMPVVKITQRH 184
           N   PGIG++R +N GDYF GPGLEEL EQLS+    RGPPPA +SSIDA+P +KITQ+H
Sbjct: 126 NGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIKITQKH 185

Query: 185 IR-SNSHCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGS 244
           ++ S+SHCPVC+D+FE+ SEA++MPC H+YHSDCIVPWLVQHNSCPVCR+ELP++GS  S
Sbjct: 186 LKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSRGSSSS 245

Query: 245 HSSSGNNNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHS-TTTGSSSPA---- 304
             SS N         R  + R N  RRN FS+ WPFR+SSS+S+ +   T +++ A    
Sbjct: 246 TQSSQN---------RSTNGRENSRRRNIFSNLWPFRSSSSSSTQNRRDTNNTATAEEGH 305

Query: 305 -------------LHESTQNQTGYSGWPFD 307
                         H+  Q+  GYSGWPFD
Sbjct: 306 YHHHQQQQQQHQHQHQQQQSHMGYSGWPFD 319

[Close]

BLAST of Sed0013028 vs. TAIR 10
Match: AT3G56580.1 (RING/U-box superfamily protein )

HSP 1 Score: 291.2 bits (744), Expect = 9.7e-79
Identity = 161/330 (48.79%), Postives = 211/330 (63.94%), Query Frame = 0


Query: 5   NTHWCYRCEQPIQLRGQDMVCPSCNGGFVQELDGTMERSPFDFFGANGNENHNPRLGFLD 64
           NTHWC+RC++ + LR +D VC  C GGFV+E+D    R       A+ +   +P    ++
Sbjct: 6   NTHWCHRCQRAVWLRARDAVCSYCGGGFVEEIDIGPSR-------AHRDVERDPTFDLME 65

Query: 65  LFSNFMRQRMIDRN---DIRGRLESIPDHG-SGFGPWLIYGGQIPVRLSG--HGGFEAFF 124
            FS FMR R+ +R+   +I GRL S      S   P LI+GGQ P RL+G  +   EAF 
Sbjct: 66  AFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAGGDNSSVEAFV 125

Query: 125 N-EVPGIGVSR-SNGGDYFVGPGLEELFEQLSA-NDRRGPPPAARSSIDAMPVVKITQRH 184
           N   PGIG++R +N GDYF GPGLEEL EQLS+    RGPPPA +SSIDA+P +KITQ+H
Sbjct: 126 NGAAPGIGIARGTNAGDYFFGPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIKITQKH 185

Query: 185 IR-SNSHCPVCQDKFEIGSEARKMPCEHVYHSDCIVPWLVQHNSCPVCRQELPAQGSGGS 244
           ++ S+SHCPVC+D+FE+ SEA++MPC H+YHSDCIVPWLVQHNSCPVCR+ELP++GS  S
Sbjct: 186 LKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVCRKELPSRGSSSS 245

Query: 245 HSSSGNNNVSRNSREREDSSRTNQGRRNPFSSFWPFRASSSNSSHS-TTTGSSSPA---- 304
             SS N         R  + R N  RRN FS+ WPFR+SSS+S+ +   T +++ A    
Sbjct: 246 TQSSQN---------RSTNGRENSRRRNIFSNLWPFRSSSSSSTQNRRDTNNTATAEEGH 305

Query: 305 -------------LHESTQNQTGYSGWPFD 307
                         H+  Q+  GYSGWPFD
Sbjct: 306 YHHHQQQQQQHQHQHQQQQSHMGYSGWPFD 319

The following BLAST results are available for this feature:

BLAST of Sed0013028 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028452.1	6.6e-162	89.87	putative E3 ubiquitin-protein ligase RHC1A, partial [Cucurbita argyrosperma subs...	[more]
XP_022974705.1	1.9e-161	89.54	probable E3 ubiquitin-protein ligase RHC1A isoform X1 [Cucurbita maxima] >XP_022...	[more]
XP_023539608.1	3.3e-161	89.22	probable E3 ubiquitin-protein ligase RHC1A [Cucurbita pepo subsp. pepo]	[more]
XP_022940469.1	7.3e-161	89.22	probable E3 ubiquitin-protein ligase RHC1A [Cucurbita moschata]	[more]
XP_038904133.1	7.1e-156	85.95	probable E3 ubiquitin-protein ligase RHC1A isoform X1 [Benincasa hispida]	[more]

BLAST of Sed0013028 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22197	8.5e-88	54.27	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q94AK4	1.4e-77	48.79	E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV...	[more]
P0CH30	3.1e-37	34.68	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q8LPN7	1.7e-35	32.57	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q9SNB6	8.1e-30	33.33	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]

BLAST of Sed0013028 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IB00	9.3e-162	89.54	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111473444 P...	[more]
A0A6J1FK80	3.5e-161	89.22	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111446055...	[more]
A0A5A7UFI3	2.4e-154	84.97	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B774	2.4e-154	84.97	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103486912 PE=4 ...	[more]
A0A0A0LCH6	5.5e-154	84.64	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G822250 PE...	[more]

BLAST of Sed0013028 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40830.2	6.1e-89	54.27	RING-H2 finger C1A	[more]
AT2G40830.1	6.1e-89	54.27	RING-H2 finger C1A	[more]
AT2G40830.3	6.1e-89	54.27	RING-H2 finger C1A	[more]
AT3G56580.2	9.7e-79	48.79	RING/U-box superfamily protein	[more]
AT3G56580.1	9.7e-79	48.79	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 182..222 e-value: 2.1E-6 score: 37.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 181..223 e-value: 5.5E-12 score: 45.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 182..223 score: 12.076194
IPR039525	E3 ubiquitin-protein ligase RNF126-like, zinc-ribbon	PFAM	PF14369	zinc_ribbon_9	coord: 5..36 e-value: 2.6E-10 score: 40.4
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 145..229 e-value: 4.2E-22 score: 79.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..306
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..244
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 2..302
None	No IPR available	PANTHER	PTHR15710:SF83	E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED	coord: 2..302
None	No IPR available	CDD	cd16667	RING-H2_RNF126_like	coord: 182..223 e-value: 1.2199E-23 score: 89.2992
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 162..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013028.1	Sed0013028.1	mRNA
Sed0013028.2	Sed0013028.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0061630	ubiquitin protein ligase activity