Sed0013022 (gene) Chayote v1

Overview


Name	Sed0013022
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein DGCR14
Location	LG04: 46000877 .. 46001985 (-)
RNA-Seq Expression	Sed0013022
Synteny	Sed0013022

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCTAGATTGAAGGGCCTAACCAAAGAAATTAACCGAACTAGCACTCGGTTCCATGGTAAAATGGATTCGAGGACAAGAGACGATGGTGCAGTGGAAATGCTTTATACCCCAATGGCTGGAGCTACTCCACATCCTGTGCTGGATAGAGATGTGGATAGGTTGAAGAAGTATGATTTGGAGGTTTTAAGGAAGACCCCGAATCCATCTTATGTAGAATCGAGGATAAAGGATGAGAATGACTACAGTTTTGTCTCAACGTCGTCGCCTGCACCTGGTGTTGATGAATCTCCATTTATTACATGTGGTGAAATTGAAAGAACGCCCCTGAGACTAGATCCTGAGAATACGCCTTTTGACATTGTTGGGCGACATTATAATATTCTATGTCCACCTGCAAGAGAGGTGAAGGCTCATTCACTTTCATGGGAGCGGCGCAAAGCCAAGGGAGAAATAAAAAATGTTTCAAAAGCCACCTGTTAGAGGGGGAAGTGCTACCTCAAGTGTTCGAAGAACTCCAGCCGTCCAGAAGTTCGTTAGGAATGCAATAACCAAGTCGTCTTCTTCATTTGATGAATACTTTGTGCCAGTTACAGAGGTGGAAGCCCGAAAAGCGGGAGGAGATTGTCTAGGTTTGCAAGAGATAAGAGCTTTGGCTCTAGGTCACCTTCTGTCAAGGAAGGTTCAAATCCTGCTTGGTGGTGTAATATTATTTCCAGCCAAATATAAGTGCTTCATGTATTCTAACAATTCTGTCTTGAAACCCCTTCCTAATATCATTTTGTTTGTTTTATAAGTTTTACAATGTCAATGTAAAGAGGATAACTGCTTCATGTATTCTAAGTCTAAACAGTTCTGTATTTAAAGCCTTTCCTAATATCATTTTCTTTGTCTTATAAGTTTTACAATGTCAATGTAAAGAGATTGCTAAATTTGTTGGATACTAAAAACTAATGAACCTCCCATTTGGTAGTCTGAATTATTTAAATAATGTCCCTTATGATTCATTTCTGCAGTTGCTTTCGGTATTATCATCTCGAAATTTATTCGATCAATTCCCAGCTTTCAATTGCAAAGATGGGGATCTCGAGCGGATGGTTAACTAA

mRNA sequence

ATGGTTGCTAGATTGAAGGGCCTAACCAAAGAAATTAACCGAACTAGCACTCGGTTCCATGGTAAAATGGATTCGAGGACAAGAGACGATGGTGCAGTGGAAATGCTTTATACCCCAATGGCTGGAGCTACTCCACATCCTGTGCTGGATAGAGATGTGGATAGGTTGAAGAAGTATGATTTGGAGGTTTTAAGGAAGACCCCGAATCCATCTTATGTAGAATCGAGGATAAAGGATGAGAATGACTACAGTTTTGTCTCAACGTCGTCGCCTGCACCTGGTGTTGATGAATCTCCATTTATTACATGTGGTGAAATTGAAAGAACGCCCCTGAGACTAGATCCTGAGAATACGCCTTTTGACATTGTTGGGCGACATTATAATATTCTATGTCCACCTGCAAGAGAGGTGAAGGCTCATTCACTTTCATGGGAGCGGCGCAAAGCCAAGGGAGAAATAAAAAATCCACCTGTTAGAGGGGGAAGTGCTACCTCAAGTGTTCGAAGAACTCCAGCCGTCCAGAAGTTCGTTAGGAATGCAATAACCAAGTCGTCTTCTTCATTTGATGAATACTTTGTGCCAGTTACAGAGGTGGAAGCCCGAAAAGCGGGAGGAGATTGTCTAGGTTTGCAAGAGATAAGAGCTTTGGCTCTAGGTCACCTTCTGTCAAGGAAGTTGCTTTCGGTATTATCATCTCGAAATTTATTCGATCAATTCCCAGCTTTCAATTGCAAAGATGGGGATCTCGAGCGGATGGTTAACTAA

Coding sequence (CDS)

ATGGTTGCTAGATTGAAGGGCCTAACCAAAGAAATTAACCGAACTAGCACTCGGTTCCATGGTAAAATGGATTCGAGGACAAGAGACGATGGTGCAGTGGAAATGCTTTATACCCCAATGGCTGGAGCTACTCCACATCCTGTGCTGGATAGAGATGTGGATAGGTTGAAGAAGTATGATTTGGAGGTTTTAAGGAAGACCCCGAATCCATCTTATGTAGAATCGAGGATAAAGGATGAGAATGACTACAGTTTTGTCTCAACGTCGTCGCCTGCACCTGGTGTTGATGAATCTCCATTTATTACATGTGGTGAAATTGAAAGAACGCCCCTGAGACTAGATCCTGAGAATACGCCTTTTGACATTGTTGGGCGACATTATAATATTCTATGTCCACCTGCAAGAGAGGTGAAGGCTCATTCACTTTCATGGGAGCGGCGCAAAGCCAAGGGAGAAATAAAAAATCCACCTGTTAGAGGGGGAAGTGCTACCTCAAGTGTTCGAAGAACTCCAGCCGTCCAGAAGTTCGTTAGGAATGCAATAACCAAGTCGTCTTCTTCATTTGATGAATACTTTGTGCCAGTTACAGAGGTGGAAGCCCGAAAAGCGGGAGGAGATTGTCTAGGTTTGCAAGAGATAAGAGCTTTGGCTCTAGGTCACCTTCTGTCAAGGAAGTTGCTTTCGGTATTATCATCTCGAAATTTATTCGATCAATTCCCAGCTTTCAATTGCAAAGATGGGGATCTCGAGCGGATGGTTAACTAA

Protein sequence

MVARLKGLTKEINRTSTRFHGKMDSRTRDDGAVEMLYTPMAGATPHPVLDRDVDRLKKYDLEVLRKTPNPSYVESRIKDENDYSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTPFDIVGRHYNILCPPAREVKAHSLSWERRKAKGEIKNPPVRGGSATSSVRRTPAVQKFVRNAITKSSSSFDEYFVPVTEVEARKAGGDCLGLQEIRALALGHLLSRKLLSVLSSRNLFDQFPAFNCKDGDLERMVN

Homology

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BLAST of Sed0013022 vs. NCBI nr
Match: KAA0059187.1 (protein DGCR14 [Cucumis melo var. makuwa] >TYK19332.1 protein DGCR14 [Cucumis melo var. makuwa])

HSP 1 Score: 263.1 bits (671), Expect = 2.5e-66
Identity = 147/202 (72.77%), Postives = 158/202 (78.22%), Query Frame = 0


Query: 4   RLKGLTKEINRTSTRFHGK-MDSRTRDDGAVEMLYTPMAGATPHPVLDRDVDRLKKYDLE 63
           RLKGLTKEINR+STRFHGK MDSR +DDG+VE++YTP+AG TPHPVLDRD DRLKKYDLE
Sbjct: 262 RLKGLTKEINRSSTRFHGKLMDSRPKDDGSVEVIYTPVAGTTPHPVLDRDGDRLKKYDLE 321

Query: 64  VLRKTPNPSYVESRIKDENDYSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTPFDI 123
            LRKTPNP YVES  K EN YSFV T SPAPGVDESPFIT GEIE TPLRLDPE+TP DI
Sbjct: 322 DLRKTPNPFYVESGKKAENGYSFVRTPSPAPGVDESPFITWGEIEGTPLRLDPEDTPIDI 381

Query: 124 VGR----HYNILCPPAREVKAHSLSWE-----RRKAKGEIKNP---PVRGGSATSSVRRT 183
            G      YNI CP AR+ KAHSLS E     R K+K   K P   PVRGGSA+ SV+RT
Sbjct: 382 GGSVDGPRYNIPCPAARDEKAHSLSREAARKLREKSKMFQKPPLPSPVRGGSASPSVKRT 441

Query: 184 --PAVQKFVRNAITKSSSSFDE 191
             PA QKFVRNAI KSSSSFDE
Sbjct: 442 LSPAAQKFVRNAIAKSSSSFDE 463

[Close]

BLAST of Sed0013022 vs. NCBI nr
Match: XP_038887768.1 (splicing factor ESS-2 homolog [Benincasa hispida])

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-65
Identity = 148/202 (73.27%), Postives = 156/202 (77.23%), Query Frame = 0


Query: 4   RLKGLTKEINRTSTRFHGK-MDSRTRDDGAVEMLYTPMAGATPHPVLDRDVDRLKKYDLE 63
           RLK LTKEINR+STRFHGK MDSR ++DG VE+LYTP+AGATPHPVLDRD DRLKKYDLE
Sbjct: 262 RLKCLTKEINRSSTRFHGKVMDSRPKEDGTVEVLYTPVAGATPHPVLDRDGDRLKKYDLE 321

Query: 64  VLRKTPNPSYVESRIKDENDYSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTPFDI 123
            LRKTPNP YVES  K EN YSFV T SPAPGVDESPFIT GEIE TPLRLDPE TP DI
Sbjct: 322 DLRKTPNPFYVESGKKAENGYSFVRTPSPAPGVDESPFITWGEIEGTPLRLDPEETPIDI 381

Query: 124 VGR----HYNILCPPAREVKAHSLSWE-----RRKAKGEIKNP---PVRGGSATSSVRRT 183
            G      YNI CP AR+ KAHSLS E     R K+K   K P   PVRGGSA+ SVRRT
Sbjct: 382 GGSVDGPRYNIPCPAARDEKAHSLSREAARKLREKSKMFQKPPLPSPVRGGSASPSVRRT 441

Query: 184 --PAVQKFVRNAITKSSSSFDE 191
             PA QKFVRNAI KSSSSFDE
Sbjct: 442 LSPAAQKFVRNAIAKSSSSFDE 463

[Close]

BLAST of Sed0013022 vs. NCBI nr
Match: XP_004144540.1 (splicing factor ESS-2 homolog [Cucumis sativus] >KGN43429.1 hypothetical protein Csa_020536 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 2.1e-65
Identity = 145/202 (71.78%), Postives = 157/202 (77.72%), Query Frame = 0


Query: 4   RLKGLTKEINRTSTRFHGK-MDSRTRDDGAVEMLYTPMAGATPHPVLDRDVDRLKKYDLE 63
           RLKGLTKEINR+STRFHGK MDSR +DDG+VE++Y P+AG TPHPVLDRD DRLKKYDLE
Sbjct: 262 RLKGLTKEINRSSTRFHGKLMDSRPKDDGSVEVIYAPVAGTTPHPVLDRDGDRLKKYDLE 321

Query: 64  VLRKTPNPSYVESRIKDENDYSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTPFDI 123
            LRKTPNP YVES  + EN YSFV T SPAPGVDESPFIT GEIE TPLRLDPE+TP DI
Sbjct: 322 DLRKTPNPFYVESGKRAENGYSFVRTPSPAPGVDESPFITWGEIEGTPLRLDPEDTPIDI 381

Query: 124 VGR----HYNILCPPAREVKAHSLSWE-----RRKAKGEIKNP---PVRGGSATSSVRRT 183
            G      YNI CP AR+ KAHSLS E     R K+K   K P   PVRGGSA+ SV+RT
Sbjct: 382 GGSVDGPRYNIPCPAARDEKAHSLSREAARKLREKSKMFQKPPLPSPVRGGSASPSVKRT 441

Query: 184 --PAVQKFVRNAITKSSSSFDE 191
             PA QKFVRNAI KSSSSFDE
Sbjct: 442 LSPAAQKFVRNAIAKSSSSFDE 463

[Close]

BLAST of Sed0013022 vs. NCBI nr
Match: XP_023529670.1 (protein DGCR14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.2 bits (661), Expect = 3.6e-65
Identity = 146/205 (71.22%), Postives = 156/205 (76.10%), Query Frame = 0


Query: 1   MVARLKGLTKEINRTSTRFHGK-MDSRTRDDGAVEMLYTPMAGATPHPVLDRDVDRLKKY 60
           M  RLKGLTKEINRTSTRFHGK MDSR + DG VE+LYTP+AG+TP+PV +RD DRLKKY
Sbjct: 258 MAVRLKGLTKEINRTSTRFHGKLMDSRPKGDGTVEVLYTPVAGSTPYPVSNRDGDRLKKY 317

Query: 61  DLEVLRKTPNPSYVESRIKDENDYSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTP 120
           DLE LRKTPNP YVES  K EN Y FV T SPAPGVDESPFIT GEIE TPLRLDPE TP
Sbjct: 318 DLEDLRKTPNPFYVESGKKAENGYGFVRTPSPAPGVDESPFITWGEIEGTPLRLDPEETP 377

Query: 121 FDIVGR----HYNILCPPAREVKAHSLSWE-----RRKAKGEIKNP---PVRGGSATSSV 180
            DI G      YNI CPPAR+ KAHSLS E     R K+K   K P   PVRGGSA+ SV
Sbjct: 378 IDIGGTVDGPRYNIPCPPARDEKAHSLSREAARKLREKSKMFQKPPLPSPVRGGSASPSV 437

Query: 181 RRT--PAVQKFVRNAITKSSSSFDE 191
           RRT  PA QKFVRNAI KS+SSFDE
Sbjct: 438 RRTLSPAAQKFVRNAIAKSTSSFDE 462

[Close]

BLAST of Sed0013022 vs. NCBI nr
Match: XP_022928403.1 (protein DGCR14 [Cucurbita moschata])

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-64
Identity = 145/205 (70.73%), Postives = 156/205 (76.10%), Query Frame = 0


Query: 1   MVARLKGLTKEINRTSTRFHGK-MDSRTRDDGAVEMLYTPMAGATPHPVLDRDVDRLKKY 60
           M  RLKGLTKEINR+STRFHGK MDSR + DG VE+LYTP+AG+TP+PV +RD DRLKKY
Sbjct: 258 MAVRLKGLTKEINRSSTRFHGKLMDSRPKGDGTVEVLYTPVAGSTPYPVSNRDGDRLKKY 317

Query: 61  DLEVLRKTPNPSYVESRIKDENDYSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTP 120
           DLE LRKTPNP YVES  K EN Y FV T SPAPGVDESPFIT GEIE TPLRLDPE TP
Sbjct: 318 DLEDLRKTPNPFYVESGKKAENGYGFVRTPSPAPGVDESPFITWGEIEGTPLRLDPEETP 377

Query: 121 FDIVGR----HYNILCPPAREVKAHSLSWE-----RRKAKGEIKNP---PVRGGSATSSV 180
            DI G      YNI CPPAR+ KAHSLS E     R K+K   K P   PVRGGSA+ SV
Sbjct: 378 IDIGGTVDGPRYNIPCPPARDEKAHSLSREAARKLREKSKMFQKPPLPSPVRGGSASPSV 437

Query: 181 RRT--PAVQKFVRNAITKSSSSFDE 191
           RRT  PA QKFVRNAI KS+SSFDE
Sbjct: 438 RRTLSPAAQKFVRNAIAKSTSSFDE 462

[Close]

BLAST of Sed0013022 vs. ExPASy Swiss-Prot
Match: Q96DF8 (Splicing factor ESS-2 homolog OS=Homo sapiens OX=9606 GN=ESS2 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-07
Identity = 35/114 (30.70%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 83  YSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTPF--DIVGRHYNILCPPARE---- 142
           + FV+T SPAPGV+ESP +T GE+E TPLR++   TP+     G  + IL P  RE    
Sbjct: 298 FGFVATPSPAPGVNESPMMTWGEVENTPLRVEGSETPYVDRTPGPAFKILEPGRRERLGL 357

Query: 143 VKAHSLSWERRKAKGEIKNPPVRGGSATSSVRRTPAVQKFVRNAITKSSSSFDE 191
             A+  + + R  K E         ++ +    +PA+   ++  +++++S + +
Sbjct: 358 KMANEAAAKNRAKKQEALRRVTENLASLTPKGLSPAMSPALQRLVSRTASKYTD 411

[Close]

BLAST of Sed0013022 vs. ExPASy Swiss-Prot
Match: O70279 (Splicing factor ESS-2 homolog OS=Mus musculus OX=10090 GN=Ess2 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 6.1e-07
Identity = 34/114 (29.82%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 83  YSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTPF--DIVGRHYNILCPPARE---- 142
           + FV+T SPAPGV+ESP +T GE+E TPLR++   +P+     G  + IL P  RE    
Sbjct: 301 FGFVATPSPAPGVNESPLMTWGEVENTPLRVEGSESPYVDRTPGPTFKILEPGRRERLGL 360

Query: 143 VKAHSLSWERRKAKGEIKNPPVRGGSATSSVRRTPAVQKFVRNAITKSSSSFDE 191
             A+  + + R  K E         ++ +    +PA+   ++  +++++S + +
Sbjct: 361 KMANEAAAKNRAKKQEALRRVTENLASLTPKGLSPAMSPALQRLVSRTASKYTD 414

[Close]

BLAST of Sed0013022 vs. ExPASy TrEMBL
Match: A0A5A7UX41 (Protein DGCR14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00530 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.2e-66
Identity = 147/202 (72.77%), Postives = 158/202 (78.22%), Query Frame = 0


Query: 4   RLKGLTKEINRTSTRFHGK-MDSRTRDDGAVEMLYTPMAGATPHPVLDRDVDRLKKYDLE 63
           RLKGLTKEINR+STRFHGK MDSR +DDG+VE++YTP+AG TPHPVLDRD DRLKKYDLE
Sbjct: 262 RLKGLTKEINRSSTRFHGKLMDSRPKDDGSVEVIYTPVAGTTPHPVLDRDGDRLKKYDLE 321

Query: 64  VLRKTPNPSYVESRIKDENDYSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTPFDI 123
            LRKTPNP YVES  K EN YSFV T SPAPGVDESPFIT GEIE TPLRLDPE+TP DI
Sbjct: 322 DLRKTPNPFYVESGKKAENGYSFVRTPSPAPGVDESPFITWGEIEGTPLRLDPEDTPIDI 381

Query: 124 VGR----HYNILCPPAREVKAHSLSWE-----RRKAKGEIKNP---PVRGGSATSSVRRT 183
            G      YNI CP AR+ KAHSLS E     R K+K   K P   PVRGGSA+ SV+RT
Sbjct: 382 GGSVDGPRYNIPCPAARDEKAHSLSREAARKLREKSKMFQKPPLPSPVRGGSASPSVKRT 441

Query: 184 --PAVQKFVRNAITKSSSSFDE 191
             PA QKFVRNAI KSSSSFDE
Sbjct: 442 LSPAAQKFVRNAIAKSSSSFDE 463

[Close]

BLAST of Sed0013022 vs. ExPASy TrEMBL
Match: A0A0A0K370 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033370 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.0e-65
Identity = 145/202 (71.78%), Postives = 157/202 (77.72%), Query Frame = 0


Query: 4   RLKGLTKEINRTSTRFHGK-MDSRTRDDGAVEMLYTPMAGATPHPVLDRDVDRLKKYDLE 63
           RLKGLTKEINR+STRFHGK MDSR +DDG+VE++Y P+AG TPHPVLDRD DRLKKYDLE
Sbjct: 262 RLKGLTKEINRSSTRFHGKLMDSRPKDDGSVEVIYAPVAGTTPHPVLDRDGDRLKKYDLE 321

Query: 64  VLRKTPNPSYVESRIKDENDYSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTPFDI 123
            LRKTPNP YVES  + EN YSFV T SPAPGVDESPFIT GEIE TPLRLDPE+TP DI
Sbjct: 322 DLRKTPNPFYVESGKRAENGYSFVRTPSPAPGVDESPFITWGEIEGTPLRLDPEDTPIDI 381

Query: 124 VGR----HYNILCPPAREVKAHSLSWE-----RRKAKGEIKNP---PVRGGSATSSVRRT 183
            G      YNI CP AR+ KAHSLS E     R K+K   K P   PVRGGSA+ SV+RT
Sbjct: 382 GGSVDGPRYNIPCPAARDEKAHSLSREAARKLREKSKMFQKPPLPSPVRGGSASPSVKRT 441

Query: 184 --PAVQKFVRNAITKSSSSFDE 191
             PA QKFVRNAI KSSSSFDE
Sbjct: 442 LSPAAQKFVRNAIAKSSSSFDE 463

[Close]

BLAST of Sed0013022 vs. ExPASy TrEMBL
Match: A0A6J1JQ45 (protein DGCR14 OS=Cucurbita maxima OX=3661 GN=LOC111486457 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 5.1e-65
Identity = 145/205 (70.73%), Postives = 155/205 (75.61%), Query Frame = 0


Query: 1   MVARLKGLTKEINRTSTRFHGK-MDSRTRDDGAVEMLYTPMAGATPHPVLDRDVDRLKKY 60
           M  RLKGLTKEINRTSTRFHGK MDSR + DG VE+LYTP+AG+TP+PV +RD DRLKKY
Sbjct: 258 MAVRLKGLTKEINRTSTRFHGKLMDSRPKGDGTVEVLYTPVAGSTPYPVSNRDGDRLKKY 317

Query: 61  DLEVLRKTPNPSYVESRIKDENDYSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTP 120
           DLE LRKTPNP YVES  K EN Y FV T SPAPG DESPFIT GEIE TPLRLDPE TP
Sbjct: 318 DLEDLRKTPNPFYVESGKKAENGYGFVRTPSPAPGADESPFITWGEIEGTPLRLDPEETP 377

Query: 121 FDIVGR----HYNILCPPAREVKAHSLSWE-----RRKAKGEIKNP---PVRGGSATSSV 180
            DI G      YNI CPPAR+ KAHSLS E     R K+K   K P   PVRGGSA+ SV
Sbjct: 378 IDIGGTVDGPRYNIPCPPARDEKAHSLSREAARKLREKSKMFQKPPLPSPVRGGSASPSV 437

Query: 181 RRT--PAVQKFVRNAITKSSSSFDE 191
           RRT  PA QKFVRNAI KS+SSFDE
Sbjct: 438 RRTLSPAAQKFVRNAIAKSTSSFDE 462

[Close]

BLAST of Sed0013022 vs. ExPASy TrEMBL
Match: A0A6J1ENX3 (protein DGCR14 OS=Cucurbita moschata OX=3662 GN=LOC111435227 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 5.1e-65
Identity = 145/205 (70.73%), Postives = 156/205 (76.10%), Query Frame = 0


Query: 1   MVARLKGLTKEINRTSTRFHGK-MDSRTRDDGAVEMLYTPMAGATPHPVLDRDVDRLKKY 60
           M  RLKGLTKEINR+STRFHGK MDSR + DG VE+LYTP+AG+TP+PV +RD DRLKKY
Sbjct: 258 MAVRLKGLTKEINRSSTRFHGKLMDSRPKGDGTVEVLYTPVAGSTPYPVSNRDGDRLKKY 317

Query: 61  DLEVLRKTPNPSYVESRIKDENDYSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTP 120
           DLE LRKTPNP YVES  K EN Y FV T SPAPGVDESPFIT GEIE TPLRLDPE TP
Sbjct: 318 DLEDLRKTPNPFYVESGKKAENGYGFVRTPSPAPGVDESPFITWGEIEGTPLRLDPEETP 377

Query: 121 FDIVGR----HYNILCPPAREVKAHSLSWE-----RRKAKGEIKNP---PVRGGSATSSV 180
            DI G      YNI CPPAR+ KAHSLS E     R K+K   K P   PVRGGSA+ SV
Sbjct: 378 IDIGGTVDGPRYNIPCPPARDEKAHSLSREAARKLREKSKMFQKPPLPSPVRGGSASPSV 437

Query: 181 RRT--PAVQKFVRNAITKSSSSFDE 191
           RRT  PA QKFVRNAI KS+SSFDE
Sbjct: 438 RRTLSPAAQKFVRNAIAKSTSSFDE 462

[Close]

BLAST of Sed0013022 vs. ExPASy TrEMBL
Match: A0A1S3CG32 (LOW QUALITY PROTEIN: protein DGCR14 OS=Cucumis melo OX=3656 GN=LOC103500528 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 4.3e-64
Identity = 146/208 (70.19%), Postives = 157/208 (75.48%), Query Frame = 0


Query: 4   RLKGLTKEINRTSTRFHGK-MDSRTRDDGAVEMLYTPMAGATPHPVLDRDVDRLKKYDLE 63
           RLKGLTKEINR+STRFHGK MDSR +DDG+VE++YTP+AG TPHPVLDRD DRLKKYDLE
Sbjct: 262 RLKGLTKEINRSSTRFHGKLMDSRPKDDGSVEVIYTPVAGTTPHPVLDRDGDRLKKYDLE 321

Query: 64  VLRKTPNPSYVESRIKDENDYSFVSTSSPAPGVDESPFITC------GEIERTPLRLDPE 123
            LRKTPNP YVES  K EN YSFV T SPAPGVDESPFI        GEIE TPLRLDPE
Sbjct: 322 DLRKTPNPFYVESGKKAENGYSFVRTPSPAPGVDESPFIXXXXXXXWGEIEGTPLRLDPE 381

Query: 124 NTPFDIVGR----HYNILCPPAREVKAHSLSWE-----RRKAKGEIKNP---PVRGGSAT 183
           +TP DI G      YNI CP AR+ KAHSLS E     R K+K   K P   PVRGGSA+
Sbjct: 382 DTPIDIGGSVDGPRYNIPCPAARDEKAHSLSREAARKLREKSKMFQKPPLPSPVRGGSAS 441

Query: 184 SSVRRT--PAVQKFVRNAITKSSSSFDE 191
            SV+RT  PA QKFVRNAI KSSSSFDE
Sbjct: 442 PSVKRTLSPAAQKFVRNAIAKSSSSFDE 469

[Close]

BLAST of Sed0013022 vs. TAIR 10
Match: AT3G07790.1 (DGCR14-related )

HSP 1 Score: 207.2 bits (526), Expect = 1.5e-53
Identity = 116/202 (57.43%), Postives = 144/202 (71.29%), Query Frame = 0


Query: 4   RLKGLTKEINRTSTRFHGK-MDSRTRDDGAVEMLYTPMAGATPHPVLDRDVDRLKKYDLE 63
           RL GLTKEI + +TRFHGK MDSR R+DG+VE+LYTP+AG++P  +  RD D+ K+YDL+
Sbjct: 265 RLLGLTKEIVKGNTRFHGKTMDSRPREDGSVEILYTPIAGSSPMHISGRDRDKSKRYDLD 324

Query: 64  VLRKTPNPSYVESRIKDENDYSFVSTSSPAPGVDESPFITCGEIERTPLRLDPENTPFDI 123
            LRKTPNP YVES  + +N YSFV T SPAPG+DESPFIT GEI+ TP+RLD E+TP DI
Sbjct: 325 DLRKTPNPFYVESDKRADNGYSFVRTPSPAPGLDESPFITWGEIDGTPMRLDLEDTPIDI 384

Query: 124 VGR----HYNILCPPAREVKAHSLSWE-----RRKAKGEIKNPPV----RGGSATSSVRR 183
            G     HYNI   P R+V+AHSLS +     R ++    K PP+    R GSA+ +VR 
Sbjct: 385 GGSADGPHYNIPSAPPRDVRAHSLSRDASRKLRERSNSMFKKPPLPSPHRSGSASPNVRT 444

Query: 184 -TPAVQKFVRNAITKSSSSFDE 191
            +PA QKF R AI KSSS+ DE
Sbjct: 445 LSPAAQKFFRKAIAKSSSTVDE 466

The following BLAST results are available for this feature:

BLAST of Sed0013022 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059187.1	2.5e-66	72.77	protein DGCR14 [Cucumis melo var. makuwa] >TYK19332.1 protein DGCR14 [Cucumis me...	[more]
XP_038887768.1	1.3e-65	73.27	splicing factor ESS-2 homolog [Benincasa hispida]	[more]
XP_004144540.1	2.1e-65	71.78	splicing factor ESS-2 homolog [Cucumis sativus] >KGN43429.1 hypothetical protein...	[more]
XP_023529670.1	3.6e-65	71.22	protein DGCR14-like [Cucurbita pepo subsp. pepo]	[more]
XP_022928403.1	1.1e-64	70.73	protein DGCR14 [Cucurbita moschata]	[more]

BLAST of Sed0013022 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96DF8	2.1e-07	30.70	Splicing factor ESS-2 homolog OS=Homo sapiens OX=9606 GN=ESS2 PE=1 SV=1	[more]
O70279	6.1e-07	29.82	Splicing factor ESS-2 homolog OS=Mus musculus OX=10090 GN=Ess2 PE=1 SV=2	[more]

BLAST of Sed0013022 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UX41	1.2e-66	72.77	Protein DGCR14 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold295G00530...	[more]
A0A0A0K370	1.0e-65	71.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033370 PE=3 SV=1	[more]
A0A6J1JQ45	5.1e-65	70.73	protein DGCR14 OS=Cucurbita maxima OX=3661 GN=LOC111486457 PE=3 SV=1	[more]
A0A6J1ENX3	5.1e-65	70.73	protein DGCR14 OS=Cucurbita moschata OX=3662 GN=LOC111435227 PE=3 SV=1	[more]
A0A1S3CG32	4.3e-64	70.19	LOW QUALITY PROTEIN: protein DGCR14 OS=Cucumis melo OX=3656 GN=LOC103500528 PE=3...	[more]

BLAST of Sed0013022 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07790.1	1.5e-53	57.43	DGCR14-related	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019148	Nuclear protein DGCR14/ESS-2	PFAM	PF09751	Es2	coord: 9..173 e-value: 1.1E-16 score: 61.7
IPR019148	Nuclear protein DGCR14/ESS-2	PANTHER	PTHR12940	ES-2 PROTEIN - RELATED	coord: 3..191
None	No IPR available	PANTHER	PTHR12940:SF1	BNAA05G29860D PROTEIN	coord: 3..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013022.1	Sed0013022.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0016020	membrane