Sed0013021 (gene) Chayote v1

Overview


Name	Sed0013021
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Nucleic acid-binding, OB-fold-like protein
Location	LG03: 43196294 .. 43200632 (+)
RNA-Seq Expression	Sed0013021
Synteny	Sed0013021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGTCGGTCGCGATTAAAGTCTTCTGGCGATCAATCATCGACGGCTGTTATTTCATAGCAACTTTATTTGTTTCCTCGAAGCCAGAGTTTGACGGCTGCATTTCTCAAATCAGATCGGCCTCCTTTTTGCTCTTCGTCTTTGCCTCTTCCACTCGCAAAAGGTGATTTCTAAACCCTAAATTTCCTTTTCGTGCTTTTATATCTGCTTCTGATCTTGTATTGCCGTTTAGATTTCGATTTGCATGCTTCTGTTTATGATTCCAATTTTGAACATTCAACTGTGAAATTTGGTAATTTATAACTATTTTGAGTTTTTCATCAAGGTTTAAGCTTACCATGGAGCGTTATTTTAGGTCAAACTGGTTCTTTCTGTCACATTTGATTCATGATTTATTTACTTTGGGGAAAGAAAAGTTATGATAACCCATGTATGTTTCTGGATGCAATAATTAGAATGATTTAATCGATTTATAGCCTAAATGCCCTGAAGCAACTAATGATGTTGTAGTTGAGGGCTCTTTTAAGGTATATTTTTTGGTTGGATGAAAAATTAGAAGATTTGAAGTTCACCGAAAAAATATGATTGACGGTGAATTAAGAAGAGAACAAACATGGTGTTATTCTTTTTGAGTACATTGTGGATTGGGAGGCTGGAACCACAAGCCTCGTGCTTGTTAATACAAGCTATGGTACTTTGGCAAACATGATGTTATTTGAGGAACCTACACACTAAAAGATTTTTAACTGAAAGAATTGCTATATTATCTTTTATTTTTATATATATATATAAAGGTAGAATATTGCATAGTGGAACAACCATTGAAGTTGTATCAAAACATGATGTCAACAATTTTACATTTTGCATTAACCACCATAGGCTGATTTTAGTAGTCTAATATCGGCTTAGAGTGAATGGGTTCATAGCCACCTACTTAAGATTTATACTATTCTAGTTTCTCCGGATTTATACTATTCTAGTTTCTTCGGTACAAATGGAATAGGCTAAGCCAATTATTCTGTTTCGTTTAATGGATAATTTTAGCTATTTTATTGATTTTTTTCATGGATATTTTATCAATCCAAACCTTCAACCACCTTGGTGGTTTACATATTTTTTGATTCACAATGTCCTTCTAGTGTCTAACTGTTTAGTTATTGTTTGTATATGGGTATGATTAGGCCTTCAAGGAAATGGCAGAATCAAAACCTGGACTGAGGAAACCAGTGTTTACCAAGGTTGACCAACTTCGGCCTGGCACTAGTGGGCACACTCTTTCAGTCAAGGTTGTGAATACTAAGATGGTGTTGCAGAAGGGTCGTACTGATGGTACTCAATCTCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGGTCATATATACTGCCAGAAATGATCAAGGTAAATTTCAATATTTTTAGCCTGCACCATTTCTGTATTTGTATCTTGAATGAGGCATGCCAATTTTTTTTTTTTGTTTATGCTCACATTCTGTACATGATACTAAAAATTGGGCATCTATATCCTCATGCAACAGAAGAGCTGCAAGTAAGAGTTTTCATAACTGATTTATATCATGTGATGTAATTACATATTTCACTGTGAAAGGCAAAGGCTGTTTGATATATAAACTTTCTACTAGTAGAGATTTCATAAAGGTTTGAGGATTTTGATAAGATCCGAGATCTATATTGATATCAAAGGGAAAAATTACAAGATTACCCAAGTTTGAATAGGACTTGGAACCTCCCTTTCTCTAGAGAATCATCTCTTAGAGCCCAAAATGTAATCACTCAAAATATGCATACCTTTCCCCTCACACAACCACTCTATTTATAACTATAAGTCTCTAACTAACTCCCCAACTATTTGCCCATATATCCTTCTATTATTCCCCAATTCCCCCAAGGGCCATTCCTAACAGATTTCTGTTGTCTTAAAGTAGTCATGGGCCTTTCTTTTTCACTGACAAAAAACTAGGTTTTTACATAATGCTGGCATATACGTAGGTTAGGTTGTGAAAATTGTAATACAAAGCCAATTGAAATAAATCATCCATACAACCATCATGGGGTGGCTCAATTGGTCAAAGAGGGCCTTGGGGTGCATAAGGTGATGGGTTCAATCCCCACCCCATGGTGGCCACCTACTTAGGAATTAATTTCCTACGGATTTCCTTGGCATCTAAATGTTGTAGGGTTAGGCGGTATGTCCCGTGACATTAGTCAAGGTGCGCACAAGCTGGCCCAGACAGTCACAGATATCAGAATAAAAAAGAAAAAAAATCATCCATACAACAAGTACCTTTTAAACAACTATCAAATTATTATTTTTTTTGTTGATAATATGTAGTGGTTGGTTAGTATATACCTTAATAGTCGGATAATCACATCAGTCTTCAATAATTCAATCACATGTCGGATGTTGGATTAAGGGAAAGACCATGCATTTGAATGAACCTTCTGTTATTATTTTGATCTTGATCTTATGAGGGATTTGTTGTCTTGAAGGTCCAGCTACAACAGATAATGTTGTTTCTACCACGGCTTCTATTATTTATTACAATTGCATATTTTTAAGCTTGGATCTGATTATGTATCATATTGAGTGTTCATTGTGCACTATACTTTATGTTAATTATATTCTTAATCTTACATATGGGTGGATGCTTTAGTGAGTAAAAGATTGGCGGGTATTTTATTGTATGAGGGAGTAAGAGAATGAGAATTCATTGTCAATATCTAAAAATCATCTAGTTACTGAGACCTACATGAAACCAGTAATTTTTGTTTCTTGCTTTTGTTGGAGAAACTGCCGTCACTTCAGAATGTAGATACCTTCACCTAGGAATAGATGTTGTTTGATTGTTGTGTTTGTTCTGATGTCTATCATTTGAATCATACGTTGATTTATCATTTCCTTTTTCTATCACACTTTTCTAGACGACATTAATTCATAAAAGTAACATTATAATTAATATTATATTATTTTCCTAGAATTAGTCCAAAGAAATTATTTGTTTTTTTCTATTGGGAGATTCTTTTGGAATAAAGGAGGAGAAGAGCTCTACACTTATTGCCAAACCATTGAAACAAATAAGAAAAAAAGCTATTTTTTTTCCTTTTGAACATGAAAAAGATACAAGTTGAGAATAGTTTAATGGAAAACTGGTTAATAACACCATAACTTCGTAGCGGCATAGTTACTATTTCTTTTGCTTAAGCTGACGTAAAAGTTGGAAGACTTTTGTGGAGGGAGGTTCAGGCTCATGGTTTGACGGAGGGGGGGAACTGAACAGGTGGTGTAGGAACAGGGTGCATGGCGTAGATGGAATTTTCATAGGTCAAATCTATGATTTTGGCCTATCTTTGTTCATAAGAGTGGTTAATAACGTGATGATCTAGATTTCACTCTAATGAAACAGTCCTTGGAATAGAAGATTTGATTTTAATTTTGAATCTGTCTTCGTAGCCACAGTCCTATTAGTTTACTTGAATGAGTATTTGTATTTCTTGTGGTGGACAAATTTACATGGTATTGAAATCAGAGGAACTCATTTACTCGTATCACTTTGCTTTCTTCCTTGCAGTTGACTTGATGAAAGAAGGTAGCACTGTAACCCTGCGCAACGCTAAGATAGACATGTTTAAAGGATCAATGAGACTAGCTGTGGACAGGTGGGGCCGAGTTGAAGCGGCTACGGAGCCTGCCAGTTTTACTGTTAAGGAAGATAACAATCTTTCACTCATCGAATATGAACTCGTGAATGTGGTGGAAGAGTGAACTTTCTGAACTTTCTGGCTTCAACCTGACCATAAAATAAAGCTACAAAATATTACAAGTTTCCTTTGGGGGGTACCTAAAATGCTTGCAGAAGTTCATTATTAGGAAGTAGAATCCTAGAAGCCAGTAGTACGAAAGTTGATTTTCATCCCTGCAGGTTATTGGTGGAACCGTGTTGGGATCCACAGAGATGTGGGTAAATTGCTGTCAGTTCATGGGAGAAGGCTTATCTGGCTTTTTTTTTTTTATAAAAAAGAAATATTATTTACTTTTCCTTTGTCTAGTATTTTATTGCTTATGAACACAGTTTATAATGTTCTTGAACTATCATCAGATGACAAGACTAGCACCCTGCTCTGTTGGAAACTGATGCTTTTCTTTATAATTAAGGTTCGTGCTATCCTTAACTGCTTTTGAGTTTCAAATTCAATGCTTAATTTTGAAAGGAAAAAGAAAAAGAAAAAAACAAGTTGGCATTGTTCGTCTTTTGCTCATGATCCATGTCTCCAGTTTTAAGATTGACTTTCGCTATGCAGGTGTAC

mRNA sequence

GTGGTCGGTCGCGATTAAAGTCTTCTGGCGATCAATCATCGACGGCTGTTATTTCATAGCAACTTTATTTGTTTCCTCGAAGCCAGAGTTTGACGGCTGCATTTCTCAAATCAGATCGGCCTCCTTTTTGCTCTTCGTCTTTGCCTCTTCCACTCGCAAAAGGCCTTCAAGGAAATGGCAGAATCAAAACCTGGACTGAGGAAACCAGTGTTTACCAAGGTTGACCAACTTCGGCCTGGCACTAGTGGGCACACTCTTTCAGTCAAGGTTGTGAATACTAAGATGGTGTTGCAGAAGGGTCGTACTGATGGTACTCAATCTCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGGTCATATATACTGCCAGAAATGATCAAGTTGACTTGATGAAAGAAGGTAGCACTGTAACCCTGCGCAACGCTAAGATAGACATGTTTAAAGGATCAATGAGACTAGCTGTGGACAGGTGGGGCCGAGTTGAAGCGGCTACGGAGCCTGCCAGTTTTACTGTTAAGGAAGATAACAATCTTTCACTCATCGAATATGAACTCGTGAATGTGGTGGAAGAGTGAACTTTCTGAACTTTCTGGCTTCAACCTGACCATAAAATAAAGCTACAAAATATTACAAGTTTCCTTTGGGGGGTACCTAAAATGCTTGCAGAAGTTCATTATTAGGAAGTAGAATCCTAGAAGCCAGTAGTACGAAAGTTGATTTTCATCCCTGCAGGTTATTGGTGGAACCGTGTTGGGATCCACAGAGATGTGGGTAAATTGCTGTCAGTTCATGGGAGAAGGCTTATCTGGCTTTTTTTTTTTTATAAAAAAGAAATATTATTTACTTTTCCTTTGTCTAGTATTTTATTGCTTATGAACACAGTTTATAATGTTCTTGAACTATCATCAGATGACAAGACTAGCACCCTGCTCTGTTGGAAACTGATGCTTTTCTTTATAATTAAGGTTCGTGCTATCCTTAACTGCTTTTGAGTTTCAAATTCAATGCTTAATTTTGAAAGGAAAAAGAAAAAGAAAAAAACAAGTTGGCATTGTTCGTCTTTTGCTCATGATCCATGTCTCCAGTTTTAAGATTGACTTTCGCTATGCAGGTGTAC

Coding sequence (CDS)

ATGGCAGAATCAAAACCTGGACTGAGGAAACCAGTGTTTACCAAGGTTGACCAACTTCGGCCTGGCACTAGTGGGCACACTCTTTCAGTCAAGGTTGTGAATACTAAGATGGTGTTGCAGAAGGGTCGTACTGATGGTACTCAATCTCGTCAGATGCGAATTGCTGAATGCTTGGTGGGTGATGAGACTGGAATGGTCATATATACTGCCAGAAATGATCAAGTTGACTTGATGAAAGAAGGTAGCACTGTAACCCTGCGCAACGCTAAGATAGACATGTTTAAAGGATCAATGAGACTAGCTGTGGACAGGTGGGGCCGAGTTGAAGCGGCTACGGAGCCTGCCAGTTTTACTGTTAAGGAAGATAACAATCTTTCACTCATCGAATATGAACTCGTGAATGTGGTGGAAGAGTGA

Protein sequence

MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVKEDNNLSLIEYELVNVVEE

Homology

[Close]

BLAST of Sed0013021 vs. NCBI nr
Match: XP_004142984.1 (uncharacterized protein At4g28440 [Cucumis sativus] >XP_008444318.1 PREDICTED: uncharacterized protein At4g28440 isoform X1 [Cucumis melo] >XP_008444319.1 PREDICTED: uncharacterized protein At4g28440 isoform X1 [Cucumis melo] >XP_011649474.1 uncharacterized protein At4g28440 [Cucumis sativus] >KAA0061088.1 Nucleic acid-binding protein [Cucumis melo var. makuwa] >KGN62287.1 hypothetical protein Csa_018609 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 3.2e-63
Identity = 127/138 (92.03%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVK 120
           DETGM+I+TARNDQVDLMKEG+T+TLRNAKIDMFKGSMRLAVDRWGRVE  TEPA+FTVK
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVE-VTEPANFTVK 120

Query: 121 EDNNLSLIEYELVNVVEE 139
           EDNNLSLIEYELVNVVEE
Sbjct: 121 EDNNLSLIEYELVNVVEE 137

[Close]

BLAST of Sed0013021 vs. NCBI nr
Match: XP_038883981.1 (uncharacterized protein At4g28440 [Benincasa hispida])

HSP 1 Score: 251.5 bits (641), Expect = 4.1e-63
Identity = 126/138 (91.30%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVG 60
           MAESKPGLRKPVFTK+DQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKIDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVK 120
           DETGM+I+TARNDQVDLMKEG+T+TLRNAKIDMFKGSMRLAVDRWGRVE  TEPA+FTVK
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVE-VTEPATFTVK 120

Query: 121 EDNNLSLIEYELVNVVEE 139
           EDNNLSLIEYELVNVVEE
Sbjct: 121 EDNNLSLIEYELVNVVEE 137

[Close]

BLAST of Sed0013021 vs. NCBI nr
Match: XP_022951207.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023538137.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >XP_023538138.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >KAG7020076.1 hypothetical protein SDJN02_16758 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.2 bits (635), Expect = 2.1e-62
Identity = 126/138 (91.30%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVK 120
           DETGM+I+TARNDQVDLMKEG+T+ LRNAKIDMFKGSMRLAVDRWGRVE  TEPASFTVK
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVE-VTEPASFTVK 120

Query: 121 EDNNLSLIEYELVNVVEE 139
           E+NNLSLIEYELVNVVEE
Sbjct: 121 EENNLSLIEYELVNVVEE 137

[Close]

BLAST of Sed0013021 vs. NCBI nr
Match: XP_022961781.1 (uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023545751.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 2.7e-62
Identity = 126/138 (91.30%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL VKVVN KMVLQKGR DG Q+RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLIVKVVNAKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVK 120
           DETGM+I+TARNDQVDLMKEG+T+TLRNAKIDMFKGSMRLAVDRWGRVE  TEPA+FTVK
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVE-VTEPAAFTVK 120

Query: 121 EDNNLSLIEYELVNVVEE 139
           EDNNLSLIEYELVNVVEE
Sbjct: 121 EDNNLSLIEYELVNVVEE 137

[Close]

BLAST of Sed0013021 vs. NCBI nr
Match: XP_022131585.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 248.8 bits (634), Expect = 2.7e-62
Identity = 126/138 (91.30%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQVRQMRIAECLVG 60

Query: 61  DETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVK 120
           DETGM+I+TARNDQVD+MKEG+T+ LRNAKIDMFKGSMRLAVDRWGRVE  TEPASFTVK
Sbjct: 61  DETGMIIFTARNDQVDMMKEGATIILRNAKIDMFKGSMRLAVDRWGRVE-VTEPASFTVK 120

Query: 121 EDNNLSLIEYELVNVVEE 139
           EDNNLSLIEYELVNVVEE
Sbjct: 121 EDNNLSLIEYELVNVVEE 137

[Close]

BLAST of Sed0013021 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-41
Identity = 87/133 (65.41%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 9   RKPVFTKVDQLRPGTSGHTLSVKVVNTKMVL---QKGRTDGTQSR---QMRIAECLVGDE 68
           RKPVF KV+QL+PGT+GHTL+VKV+   +V+   +K R   + SR     RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 69  TGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVKED 128
           TG +++TARNDQVDLMK G+TV LRN++IDMFKG+MRL VD+WGR+E AT  ASFTVKED
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIE-ATGAASFTVKED 137

Query: 129 NNLSLIEYELVNV 136
           NNLSL+EYEL+NV
Sbjct: 138 NNLSLVEYELINV 149

[Close]

BLAST of Sed0013021 vs. ExPASy TrEMBL
Match: A0A1S3BA24 (uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487687 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.5e-63
Identity = 127/138 (92.03%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVK 120
           DETGM+I+TARNDQVDLMKEG+T+TLRNAKIDMFKGSMRLAVDRWGRVE  TEPA+FTVK
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVE-VTEPANFTVK 120

Query: 121 EDNNLSLIEYELVNVVEE 139
           EDNNLSLIEYELVNVVEE
Sbjct: 121 EDNNLSLIEYELVNVVEE 137

[Close]

BLAST of Sed0013021 vs. ExPASy TrEMBL
Match: A0A5A7V0K6 (Nucleic acid-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002290 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.5e-63
Identity = 127/138 (92.03%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVK 120
           DETGM+I+TARNDQVDLMKEG+T+TLRNAKIDMFKGSMRLAVDRWGRVE  TEPA+FTVK
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVE-VTEPANFTVK 120

Query: 121 EDNNLSLIEYELVNVVEE 139
           EDNNLSLIEYELVNVVEE
Sbjct: 121 EDNNLSLIEYELVNVVEE 137

[Close]

BLAST of Sed0013021 vs. ExPASy TrEMBL
Match: A0A0A0LNA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348250 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.5e-63
Identity = 127/138 (92.03%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVK 120
           DETGM+I+TARNDQVDLMKEG+T+TLRNAKIDMFKGSMRLAVDRWGRVE  TEPA+FTVK
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATITLRNAKIDMFKGSMRLAVDRWGRVE-VTEPANFTVK 120

Query: 121 EDNNLSLIEYELVNVVEE 139
           EDNNLSLIEYELVNVVEE
Sbjct: 121 EDNNLSLIEYELVNVVEE 137

[Close]

BLAST of Sed0013021 vs. ExPASy TrEMBL
Match: A0A6J1KS21 (uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC111495976 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.9e-63
Identity = 126/138 (91.30%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVK 120
           DETGM+I+TARNDQVDLMKEG+T+ LRNAKIDMFKGSMRLAVDRWGRVE  TEPASFTVK
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVE-VTEPASFTVK 120

Query: 121 EDNNLSLIEYELVNVVEE 139
           E+NNLSLIEYELVNVVEE
Sbjct: 121 EENNLSLIEYELVNVVEE 137

[Close]

BLAST of Sed0013021 vs. ExPASy TrEMBL
Match: A0A6J1GH14 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111454116 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.9e-63
Identity = 126/138 (91.30%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLVG 60
           MAESKPGLRKPVFTKVDQLRPGTSGHTL+VKVVNTKMVLQKGR DG Q+RQMRIAECLVG
Sbjct: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLTVKVVNTKMVLQKGRPDGPQARQMRIAECLVG 60

Query: 61  DETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVK 120
           DETGM+I+TARNDQVDLMKEG+T+ LRNAKIDMFKGSMRLAVDRWGRVE  TEPASFTVK
Sbjct: 61  DETGMIIFTARNDQVDLMKEGATIILRNAKIDMFKGSMRLAVDRWGRVE-VTEPASFTVK 120

Query: 121 EDNNLSLIEYELVNVVEE 139
           E+NNLSLIEYELVNVVEE
Sbjct: 121 EENNLSLIEYELVNVVEE 137

[Close]

BLAST of Sed0013021 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 223.8 bits (569), Expect = 8.6e-59
Identity = 111/138 (80.43%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 1   MAES-KPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQKGRTDGTQSRQMRIAECLV 60
           MA+S K GL+KP FTKVDQLRPGTSGH ++VK+V+TKMVLQKGR DG Q+RQ+RI+EC+V
Sbjct: 1   MADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIV 60

Query: 61  GDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTV 120
           GDETG++++TARNDQVDLMKEGSTVTLRNAKIDM+KGSMRLAVD+WGRVE  TEPASF V
Sbjct: 61  GDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVE-VTEPASFKV 120

Query: 121 KEDNNLSLIEYELVNVVE 138
           KED N+SLIEYELVNVVE
Sbjct: 121 KEDTNMSLIEYELVNVVE 137

[Close]

BLAST of Sed0013021 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-56
Identity = 108/137 (78.83%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQK--GRTDGTQSRQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L+VKVVNTKMV+Q+  GR  G QSRQMRIAECL
Sbjct: 1   MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 60

Query: 61  VGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFT 120
           VGDETG++I+TARNDQVD+MKEGS VTLRNAKIDM+KGSMRLAVDRWGRVE A EP   T
Sbjct: 61  VGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDIT 120

Query: 121 VKEDNNLSLIEYELVNV 136
           VK+DNNLSLIEYELV+V
Sbjct: 121 VKDDNNLSLIEYELVSV 137

[Close]

BLAST of Sed0013021 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-56
Identity = 108/137 (78.83%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQK--GRTDGTQSRQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L+VKVVNTKMV+Q+  GR  G QSRQMRIAECL
Sbjct: 15  MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 74

Query: 61  VGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFT 120
           VGDETG++I+TARNDQVD+MKEGS VTLRNAKIDM+KGSMRLAVDRWGRVE A EP   T
Sbjct: 75  VGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDIT 134

Query: 121 VKEDNNLSLIEYELVNV 136
           VK+DNNLSLIEYELV+V
Sbjct: 135 VKDDNNLSLIEYELVSV 151

[Close]

BLAST of Sed0013021 vs. TAIR 10
Match: AT1G10590.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-56
Identity = 108/137 (78.83%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 1   MAESKPGLRKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQK--GRTDGTQSRQMRIAECL 60
           MAE+   LRKPVFTKV++LRPGT+GH+L+VKVVNTKMV+Q+  GR  G QSRQMRIAECL
Sbjct: 1   MAEATSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECL 60

Query: 61  VGDETGMVIYTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFT 120
           VGDETG++I+TARNDQVD+MKEGS VTLRNAKIDM+KGSMRLAVDRWGRVE A EP   T
Sbjct: 61  VGDETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDIT 120

Query: 121 VKEDNNLSLIEYELVNV 136
           VK+DNNLSLIEYELV+V
Sbjct: 121 VKDDNNLSLIEYELVSV 137

[Close]

BLAST of Sed0013021 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 188.0 bits (476), Expect = 5.2e-48
Identity = 96/131 (73.28%), Postives = 110/131 (83.97%), Query Frame = 0


Query: 9   RKPVFTKVDQLRPGTSGHTLSVKVVNTKMVLQK-GRTDGTQSRQMRIAECLVGDETGMVI 68
           +KPVF KVDQL+PGTSGHTL+VKVV+   V QK G    +  R  RI+ECLVGDET  ++
Sbjct: 53  KKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACIL 112

Query: 69  YTARNDQVDLMKEGSTVTLRNAKIDMFKGSMRLAVDRWGRVEAATEPASFTVKEDNNLSL 128
           +TARNDQV+LMK G+TV LRNAKIDMFKGSMRLAVD+WGR+E ATEPA  TVKEDNNLSL
Sbjct: 113 FTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIE-ATEPADITVKEDNNLSL 172

Query: 129 IEYELVNVVEE 139
           +EYELVNVVEE
Sbjct: 173 VEYELVNVVEE 182

The following BLAST results are available for this feature:

BLAST of Sed0013021 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142984.1	3.2e-63	92.03	uncharacterized protein At4g28440 [Cucumis sativus] >XP_008444318.1 PREDICTED: u...	[more]
XP_038883981.1	4.1e-63	91.30	uncharacterized protein At4g28440 [Benincasa hispida]	[more]
XP_022951207.1	2.1e-62	91.30	uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_023001948.1 unch...	[more]
XP_022961781.1	2.7e-62	91.30	uncharacterized protein At4g28440-like [Cucurbita moschata] >XP_022961782.1 unch...	[more]
XP_022131585.1	2.7e-62	91.30	uncharacterized protein At4g28440-like [Momordica charantia]	[more]

BLAST of Sed0013021 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	1.2e-41	65.41	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of Sed0013021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BA24	1.5e-63	92.03	uncharacterized protein At4g28440 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A5A7V0K6	1.5e-63	92.03	Nucleic acid-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0LNA1	1.5e-63	92.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348250 PE=4 SV=1	[more]
A0A6J1KS21	9.9e-63	91.30	uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC1114959...	[more]
A0A6J1GH14	9.9e-63	91.30	uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Sed0013021 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23750.1	8.6e-59	80.43	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	1.8e-56	78.83	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	1.8e-56	78.83	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.2	1.8e-56	78.83	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	5.2e-48	73.28	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 23..127 e-value: 6.3E-41 score: 140.8
None	No IPR available	PANTHER	PTHR31472:SF28	BNAA07G09820D PROTEIN	coord: 1..137
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 1..137
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 27..109 e-value: 6.29719E-15 score: 63.4109
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 6..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013021.1	Sed0013021.1	mRNA