Sed0013002 (gene) Chayote v1

Overview


Name	Sed0013002
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Uncharacterised protein family SERF
Location	LG13: 22990765 .. 22992088 (+)
RNA-Seq Expression	Sed0013002
Synteny	Sed0013002

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGCAAAGGGTTTTTGCTTTTGGGCGTTGTGATTGATTCTGAATTTGAAATCCTTTTGGGAAATGGGCGGAGGCAATGGCCAGAAGTCTAAAATGGCTCGGGAGAAAAACCTGGAGAAGCAGAAGTCTTCGAGAGGTAATTAATTAGGGCTCGTTCGATAACGTTCTCTATTTATTTATTTTTTGGATTGATTTTTGGGATTGCCCTTGTACTACTTTGACCCACCTTTGGGTAGTGTTTGGGGATCGCTTATACAAATCCTCCGCCCGTTCTTTCACGGAACTATGCATGTTTCTGCACTTTAAACATTGTTTATAATAATTTATAGAGTGGTCCAATCATGATAAACAGCCTTAAGACAATGAATTTAATTCACGATGATTGCTTATATAGTTATTAATTTTCTACTACTTGTTTTTTACATTCAAATGTTGTAGTCAATCGGTGACAATGTTCAGTTGCGTCTAAATTGGCCTAGCAGTCGCGGATATAAAAAAAAAAAAAGTGTTTGGCTTGCACTCTAAAAACCAATTGGTGTCCCCAGTGGCCTACATAAAACATAATTTCATTACCAGATAGATTAAATCTGATCACTTTGCCAATTTAGACTTTCAGGTGTGATAACTGTATAAAGATTATAGTTGATTATGATTTTGAACTGGAGTAATTTTCTCAGGAAGCCAGCTGGAAAAGAACAAGAAAGCCATGACAATTCAGGTAAAACTCAATGAGTTGTTCTTTTTTACATCTAAATTTTTGTTGATGATTACTCTTTATCCAAAGGGCGACCTCATTGTAGAAACTTGGGGTCGTTAAGGTATCATGCTTTTAAGGTTCCTGATTTGAAATCTACGAATATCTCTTGTTGTCTTTTGAGTCTGAACCTTGGAACAACATGGGTATCCTGGTTATTTGTGGGGTGAACCTCCGATTCTTAGTCATAAAAAAACAGTGGAGTTAGAATTTATTGAAAATTGAAAATTGGGTTATTGTGAAATATTGTAGTGCAAGGTATGCATGCAGACATTCATATGTACAACAACAGAGGTGAAGTGCAGGGAACATGCAGAAGCAAGGCACCCAAAATCTGATGTATTTGCCTGTTTTCCCCATCTTAAGAATTGAATAATTCCCAAACTTTAACCCTACATATCAATCAACTTACAACTTTATGCTCTCTAAACTTCTCCTCTCTTTTGTATTATTGAATGATTATAGAGGCTATACATGCCTTTCAATGTAACAACATAATGCTTGTTGTCAATAATATATTGAAAAAGATCAAATATATTTTGATTTATTGCTAAAGATTTTCATTTCAC

mRNA sequence

ATTTGCAAAGGGTTTTTGCTTTTGGGCGTTGTGATTGATTCTGAATTTGAAATCCTTTTGGGAAATGGGCGGAGGCAATGGCCAGAAGTCTAAAATGGCTCGGGAGAAAAACCTGGAGAAGCAGAAGTCTTCGAGAGGAAGCCAGCTGGAAAAGAACAAGAAAGCCATGACAATTCAGTGCAAGGTATGCATGCAGACATTCATATGTACAACAACAGAGGTGAAGTGCAGGGAACATGCAGAAGCAAGGCACCCAAAATCTGATGTATTTGCCTGTTTTCCCCATCTTAAGAATTGAATAATTCCCAAACTTTAACCCTACATATCAATCAACTTACAACTTTATGCTCTCTAAACTTCTCCTCTCTTTTGTATTATTGAATGATTATAGAGGCTATACATGCCTTTCAATGTAACAACATAATGCTTGTTGTCAATAATATATTGAAAAAGATCAAATATATTTTGATTTATTGCTAAAGATTTTCATTTCAC

Coding sequence (CDS)

ATGGGCGGAGGCAATGGCCAGAAGTCTAAAATGGCTCGGGAGAAAAACCTGGAGAAGCAGAAGTCTTCGAGAGGAAGCCAGCTGGAAAAGAACAAGAAAGCCATGACAATTCAGTGCAAGGTATGCATGCAGACATTCATATGTACAACAACAGAGGTGAAGTGCAGGGAACATGCAGAAGCAAGGCACCCAAAATCTGATGTATTTGCCTGTTTTCCCCATCTTAAGAATTGA

Protein sequence

MGGGNGQKSKMAREKNLEKQKSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAEARHPKSDVFACFPHLKN

Homology

[Close]

BLAST of Sed0013002 vs. NCBI nr
Match: XP_022937248.1 (uncharacterized protein At2g23090-like [Cucurbita moschata] >KAG6591413.1 hypothetical protein SDJN03_13759, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024292.1 hypothetical protein SDJN02_13106 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 9.4e-33
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQK-SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQK SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLKN 78
          EARHPKSDV+ACFPHLKN
Sbjct: 61 EARHPKSDVYACFPHLKN 78

[Close]

BLAST of Sed0013002 vs. NCBI nr
Match: XP_038897649.1 (uncharacterized protein At2g23090-like [Benincasa hispida])

HSP 1 Score: 148.7 bits (374), Expect = 2.1e-32
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQKSKMARE+NLEKQKSSRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKSKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVFACFPHLK 77
          ARHPKSDV+ACFPHLK
Sbjct: 61 ARHPKSDVYACFPHLK 76

[Close]

BLAST of Sed0013002 vs. NCBI nr
Match: XP_008452628.1 (PREDICTED: uncharacterized protein At2g23090-like [Cucumis melo] >KAA0064431.1 uncharacterized protein E6C27_scaffold255G001420 [Cucumis melo var. makuwa] >TYK20157.1 uncharacterized protein E5676_scaffold134G002860 [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 4.7e-32
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQK+KMARE+NLEKQKSSRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVFACFPHLK 77
          ARHPKSDV+ACFPHLK
Sbjct: 61 ARHPKSDVYACFPHLK 76

[Close]

BLAST of Sed0013002 vs. NCBI nr
Match: XP_023535928.1 (uncharacterized protein At2g23090-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.1 bits (370), Expect = 6.1e-32
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQK-SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEK K SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKLKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLKN 78
          EARHPKSDV+ACFPHLKN
Sbjct: 61 EARHPKSDVYACFPHLKN 78

[Close]

BLAST of Sed0013002 vs. NCBI nr
Match: XP_022977152.1 (uncharacterized protein At2g23090-like [Cucurbita maxima])

HSP 1 Score: 147.1 bits (370), Expect = 6.1e-32
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQK-SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQK SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLKN 78
          EARHPKS V+ACFPHLKN
Sbjct: 61 EARHPKSGVYACFPHLKN 78

[Close]

BLAST of Sed0013002 vs. ExPASy Swiss-Prot
Match: O64818 (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.5e-28
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSS-RGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGN QKS MAR KNLEK K++ +GSQLE NKKAM+IQCKVCMQTFICTT+EVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLK 77
          EA+HPK+DV ACFPHLK
Sbjct: 61 EAKHPKADVVACFPHLK 77

[Close]

BLAST of Sed0013002 vs. ExPASy TrEMBL
Match: A0A6J1FFL3 (uncharacterized protein At2g23090-like OS=Cucurbita moschata OX=3662 GN=LOC111443593 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.6e-33
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQK-SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQK SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLKN 78
          EARHPKSDV+ACFPHLKN
Sbjct: 61 EARHPKSDVYACFPHLKN 78

[Close]

BLAST of Sed0013002 vs. ExPASy TrEMBL
Match: A0A5A7VFF4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002860 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQK+KMARE+NLEKQKSSRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVFACFPHLK 77
          ARHPKSDV+ACFPHLK
Sbjct: 61 ARHPKSDVYACFPHLK 76

[Close]

BLAST of Sed0013002 vs. ExPASy TrEMBL
Match: A0A1S3BU86 (uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103493591 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQK+KMARE+NLEKQKSSRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVFACFPHLK 77
          ARHPKSDV+ACFPHLK
Sbjct: 61 ARHPKSDVYACFPHLK 76

[Close]

BLAST of Sed0013002 vs. ExPASy TrEMBL
Match: A0A6J1IHN4 (uncharacterized protein At2g23090-like OS=Cucurbita maxima OX=3661 GN=LOC111477302 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQK-SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQK SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLKN 78
          EARHPKS V+ACFPHLKN
Sbjct: 61 EARHPKSGVYACFPHLKN 78

[Close]

BLAST of Sed0013002 vs. ExPASy TrEMBL
Match: A0A0A0KZW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642360 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.1e-32
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQK+KMARE+NLEKQK+SRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVFACFPHLK 77
          ARHPKSDV+ACFPHLK
Sbjct: 61 ARHPKSDVYACFPHLK 76

[Close]

BLAST of Sed0013002 vs. TAIR 10
Match: AT2G23090.1 (Uncharacterised protein family SERF )

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-29
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1  MGGGNGQKSKMAREKNLEKQKSS-RGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGN QKS MAR KNLEK K++ +GSQLE NKKAM+IQCKVCMQTFICTT+EVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLK 77
          EA+HPK+DV ACFPHLK
Sbjct: 61 EAKHPKADVVACFPHLK 77

The following BLAST results are available for this feature:

BLAST of Sed0013002 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937248.1	9.4e-33	97.44	uncharacterized protein At2g23090-like [Cucurbita moschata] >KAG6591413.1 hypoth...	[more]
XP_038897649.1	2.1e-32	96.05	uncharacterized protein At2g23090-like [Benincasa hispida]	[more]
XP_008452628.1	4.7e-32	94.74	PREDICTED: uncharacterized protein At2g23090-like [Cucumis melo] >KAA0064431.1 u...	[more]
XP_023535928.1	6.1e-32	96.15	uncharacterized protein At2g23090-like [Cucurbita pepo subsp. pepo]	[more]
XP_022977152.1	6.1e-32	96.15	uncharacterized protein At2g23090-like [Cucurbita maxima]	[more]

BLAST of Sed0013002 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64818	2.5e-28	81.82	Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 P...	[more]

BLAST of Sed0013002 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FFL3	4.6e-33	97.44	uncharacterized protein At2g23090-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A5A7VFF4	2.3e-32	94.74	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BU86	2.3e-32	94.74	uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103493591 P...	[more]
A0A6J1IHN4	3.0e-32	96.15	uncharacterized protein At2g23090-like OS=Cucurbita maxima OX=3661 GN=LOC1114773...	[more]
A0A0A0KZW6	5.1e-32	93.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642360 PE=4 SV=1	[more]

BLAST of Sed0013002 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23090.1	1.8e-29	81.82	Uncharacterised protein family SERF	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 3..35 e-value: 9.0E-7 score: 29.7
IPR039438	At2g23090-like, zinc-binding domain	PFAM	PF12907	zf-met2	coord: 38..75 e-value: 3.4E-19 score: 68.6
IPR026939	ZNF706/At2g23090 superfamily	GENE3D	4.10.1050.10		coord: 1..77 e-value: 4.7E-32 score: 112.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR33788:SF17	SUBFAMILY NOT NAMED	coord: 1..76
None	No IPR available	SUPERFAMILY	118359	Expressed protein At2g23090/F21P24.15	coord: 1..76
IPR039713	At2g23090-like	PANTHER	PTHR33788	OS07G0114300 PROTEIN	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0013002.1	Sed0013002.1	mRNA