Sed0013002 (gene) Chayote v1

Overview
NameSed0013002
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUncharacterised protein family SERF
LocationLG13: 22990765 .. 22992088 (+)
RNA-Seq ExpressionSed0013002
SyntenySed0013002
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGCAAAGGGTTTTTGCTTTTGGGCGTTGTGATTGATTCTGAATTTGAAATCCTTTTGGGAAATGGGCGGAGGCAATGGCCAGAAGTCTAAAATGGCTCGGGAGAAAAACCTGGAGAAGCAGAAGTCTTCGAGAGGTAATTAATTAGGGCTCGTTCGATAACGTTCTCTATTTATTTATTTTTTGGATTGATTTTTGGGATTGCCCTTGTACTACTTTGACCCACCTTTGGGTAGTGTTTGGGGATCGCTTATACAAATCCTCCGCCCGTTCTTTCACGGAACTATGCATGTTTCTGCACTTTAAACATTGTTTATAATAATTTATAGAGTGGTCCAATCATGATAAACAGCCTTAAGACAATGAATTTAATTCACGATGATTGCTTATATAGTTATTAATTTTCTACTACTTGTTTTTTACATTCAAATGTTGTAGTCAATCGGTGACAATGTTCAGTTGCGTCTAAATTGGCCTAGCAGTCGCGGATATAAAAAAAAAAAAAGTGTTTGGCTTGCACTCTAAAAACCAATTGGTGTCCCCAGTGGCCTACATAAAACATAATTTCATTACCAGATAGATTAAATCTGATCACTTTGCCAATTTAGACTTTCAGGTGTGATAACTGTATAAAGATTATAGTTGATTATGATTTTGAACTGGAGTAATTTTCTCAGGAAGCCAGCTGGAAAAGAACAAGAAAGCCATGACAATTCAGGTAAAACTCAATGAGTTGTTCTTTTTTACATCTAAATTTTTGTTGATGATTACTCTTTATCCAAAGGGCGACCTCATTGTAGAAACTTGGGGTCGTTAAGGTATCATGCTTTTAAGGTTCCTGATTTGAAATCTACGAATATCTCTTGTTGTCTTTTGAGTCTGAACCTTGGAACAACATGGGTATCCTGGTTATTTGTGGGGTGAACCTCCGATTCTTAGTCATAAAAAAACAGTGGAGTTAGAATTTATTGAAAATTGAAAATTGGGTTATTGTGAAATATTGTAGTGCAAGGTATGCATGCAGACATTCATATGTACAACAACAGAGGTGAAGTGCAGGGAACATGCAGAAGCAAGGCACCCAAAATCTGATGTATTTGCCTGTTTTCCCCATCTTAAGAATTGAATAATTCCCAAACTTTAACCCTACATATCAATCAACTTACAACTTTATGCTCTCTAAACTTCTCCTCTCTTTTGTATTATTGAATGATTATAGAGGCTATACATGCCTTTCAATGTAACAACATAATGCTTGTTGTCAATAATATATTGAAAAAGATCAAATATATTTTGATTTATTGCTAAAGATTTTCATTTCAC

mRNA sequence

ATTTGCAAAGGGTTTTTGCTTTTGGGCGTTGTGATTGATTCTGAATTTGAAATCCTTTTGGGAAATGGGCGGAGGCAATGGCCAGAAGTCTAAAATGGCTCGGGAGAAAAACCTGGAGAAGCAGAAGTCTTCGAGAGGAAGCCAGCTGGAAAAGAACAAGAAAGCCATGACAATTCAGTGCAAGGTATGCATGCAGACATTCATATGTACAACAACAGAGGTGAAGTGCAGGGAACATGCAGAAGCAAGGCACCCAAAATCTGATGTATTTGCCTGTTTTCCCCATCTTAAGAATTGAATAATTCCCAAACTTTAACCCTACATATCAATCAACTTACAACTTTATGCTCTCTAAACTTCTCCTCTCTTTTGTATTATTGAATGATTATAGAGGCTATACATGCCTTTCAATGTAACAACATAATGCTTGTTGTCAATAATATATTGAAAAAGATCAAATATATTTTGATTTATTGCTAAAGATTTTCATTTCAC

Coding sequence (CDS)

ATGGGCGGAGGCAATGGCCAGAAGTCTAAAATGGCTCGGGAGAAAAACCTGGAGAAGCAGAAGTCTTCGAGAGGAAGCCAGCTGGAAAAGAACAAGAAAGCCATGACAATTCAGTGCAAGGTATGCATGCAGACATTCATATGTACAACAACAGAGGTGAAGTGCAGGGAACATGCAGAAGCAAGGCACCCAAAATCTGATGTATTTGCCTGTTTTCCCCATCTTAAGAATTGA

Protein sequence

MGGGNGQKSKMAREKNLEKQKSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAEARHPKSDVFACFPHLKN
Homology
[Close]
BLAST of Sed0013002 vs. NCBI nr
Match: XP_022937248.1 (uncharacterized protein At2g23090-like [Cucurbita moschata] >KAG6591413.1 hypothetical protein SDJN03_13759, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024292.1 hypothetical protein SDJN02_13106 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 9.4e-33
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 1  MGGGNGQKSKMAREKNLEKQK-SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQK SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLKN 78
          EARHPKSDV+ACFPHLKN
Sbjct: 61 EARHPKSDVYACFPHLKN 78

[Close]
BLAST of Sed0013002 vs. NCBI nr
Match: XP_038897649.1 (uncharacterized protein At2g23090-like [Benincasa hispida])

HSP 1 Score: 148.7 bits (374), Expect = 2.1e-32
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 0 

Query: 1  MGGGNGQKSKMAREKNLEKQKSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQKSKMARE+NLEKQKSSRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKSKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVFACFPHLK 77
          ARHPKSDV+ACFPHLK
Sbjct: 61 ARHPKSDVYACFPHLK 76

[Close]
BLAST of Sed0013002 vs. NCBI nr
Match: XP_008452628.1 (PREDICTED: uncharacterized protein At2g23090-like [Cucumis melo] >KAA0064431.1 uncharacterized protein E6C27_scaffold255G001420 [Cucumis melo var. makuwa] >TYK20157.1 uncharacterized protein E5676_scaffold134G002860 [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 4.7e-32
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0 

Query: 1  MGGGNGQKSKMAREKNLEKQKSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQK+KMARE+NLEKQKSSRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVFACFPHLK 77
          ARHPKSDV+ACFPHLK
Sbjct: 61 ARHPKSDVYACFPHLK 76

[Close]
BLAST of Sed0013002 vs. NCBI nr
Match: XP_023535928.1 (uncharacterized protein At2g23090-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.1 bits (370), Expect = 6.1e-32
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0 

Query: 1  MGGGNGQKSKMAREKNLEKQK-SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEK K SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKLKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLKN 78
          EARHPKSDV+ACFPHLKN
Sbjct: 61 EARHPKSDVYACFPHLKN 78

[Close]
BLAST of Sed0013002 vs. NCBI nr
Match: XP_022977152.1 (uncharacterized protein At2g23090-like [Cucurbita maxima])

HSP 1 Score: 147.1 bits (370), Expect = 6.1e-32
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0 

Query: 1  MGGGNGQKSKMAREKNLEKQK-SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQK SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLKN 78
          EARHPKS V+ACFPHLKN
Sbjct: 61 EARHPKSGVYACFPHLKN 78

[Close]
BLAST of Sed0013002 vs. ExPASy Swiss-Prot
Match: O64818 (Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.5e-28
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0 

Query: 1  MGGGNGQKSKMAREKNLEKQKSS-RGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGN QKS MAR KNLEK K++ +GSQLE NKKAM+IQCKVCMQTFICTT+EVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLK 77
          EA+HPK+DV ACFPHLK
Sbjct: 61 EAKHPKADVVACFPHLK 77

[Close]
BLAST of Sed0013002 vs. ExPASy TrEMBL
Match: A0A6J1FFL3 (uncharacterized protein At2g23090-like OS=Cucurbita moschata OX=3662 GN=LOC111443593 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.6e-33
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 1  MGGGNGQKSKMAREKNLEKQK-SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQK SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLKN 78
          EARHPKSDV+ACFPHLKN
Sbjct: 61 EARHPKSDVYACFPHLKN 78

[Close]
BLAST of Sed0013002 vs. ExPASy TrEMBL
Match: A0A5A7VFF4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002860 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0 

Query: 1  MGGGNGQKSKMAREKNLEKQKSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQK+KMARE+NLEKQKSSRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVFACFPHLK 77
          ARHPKSDV+ACFPHLK
Sbjct: 61 ARHPKSDVYACFPHLK 76

[Close]
BLAST of Sed0013002 vs. ExPASy TrEMBL
Match: A0A1S3BU86 (uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103493591 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.3e-32
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 0 

Query: 1  MGGGNGQKSKMAREKNLEKQKSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQK+KMARE+NLEKQKSSRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKSSRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVFACFPHLK 77
          ARHPKSDV+ACFPHLK
Sbjct: 61 ARHPKSDVYACFPHLK 76

[Close]
BLAST of Sed0013002 vs. ExPASy TrEMBL
Match: A0A6J1IHN4 (uncharacterized protein At2g23090-like OS=Cucurbita maxima OX=3661 GN=LOC111477302 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0 

Query: 1  MGGGNGQKSKMAREKNLEKQK-SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGNGQKSKMAREKNLEKQK SSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA
Sbjct: 1  MGGGNGQKSKMAREKNLEKQKSSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLKN 78
          EARHPKS V+ACFPHLKN
Sbjct: 61 EARHPKSGVYACFPHLKN 78

[Close]
BLAST of Sed0013002 vs. ExPASy TrEMBL
Match: A0A0A0KZW6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642360 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.1e-32
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 0 

Query: 1  MGGGNGQKSKMAREKNLEKQKSSRGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60
          MGGGNGQK+KMARE+NLEKQK+SRGSQLE NKKAMTIQCKVCMQTFICTTTEVKCREHAE
Sbjct: 1  MGGGNGQKAKMARERNLEKQKASRGSQLETNKKAMTIQCKVCMQTFICTTTEVKCREHAE 60

Query: 61 ARHPKSDVFACFPHLK 77
          ARHPKSDV+ACFPHLK
Sbjct: 61 ARHPKSDVYACFPHLK 76

[Close]
BLAST of Sed0013002 vs. TAIR 10
Match: AT2G23090.1 (Uncharacterised protein family SERF )

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-29
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 0 

Query: 1  MGGGNGQKSKMAREKNLEKQKSS-RGSQLEKNKKAMTIQCKVCMQTFICTTTEVKCREHA 60
          MGGGN QKS MAR KNLEK K++ +GSQLE NKKAM+IQCKVCMQTFICTT+EVKCREHA
Sbjct: 1  MGGGNAQKSAMARAKNLEKAKAAGKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHA 60

Query: 61 EARHPKSDVFACFPHLK 77
          EA+HPK+DV ACFPHLK
Sbjct: 61 EAKHPKADVVACFPHLK 77

The following BLAST results are available for this feature:
BLAST of Sed0013002 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022937248.19.4e-3397.44uncharacterized protein At2g23090-like [Cucurbita moschata] >KAG6591413.1 hypoth... [more]
XP_038897649.12.1e-3296.05uncharacterized protein At2g23090-like [Benincasa hispida][more]
XP_008452628.14.7e-3294.74PREDICTED: uncharacterized protein At2g23090-like [Cucumis melo] >KAA0064431.1 u... [more]
XP_023535928.16.1e-3296.15uncharacterized protein At2g23090-like [Cucurbita pepo subsp. pepo][more]
XP_022977152.16.1e-3296.15uncharacterized protein At2g23090-like [Cucurbita maxima][more]
BLAST of Sed0013002 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O648182.5e-2881.82Uncharacterized protein At2g23090 OS=Arabidopsis thaliana OX=3702 GN=At2g23090 P... [more]
BLAST of Sed0013002 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FFL34.6e-3397.44uncharacterized protein At2g23090-like OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A5A7VFF42.3e-3294.74Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BU862.3e-3294.74uncharacterized protein At2g23090-like OS=Cucumis melo OX=3656 GN=LOC103493591 P... [more]
A0A6J1IHN43.0e-3296.15uncharacterized protein At2g23090-like OS=Cucurbita maxima OX=3661 GN=LOC1114773... [more]
A0A0A0KZW65.1e-3293.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642360 PE=4 SV=1[more]
BLAST of Sed0013002 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G23090.11.8e-2981.82Uncharacterised protein family SERF [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007513Uncharacterised protein family SERF, N-terminalPFAMPF044194F5coord: 3..35
e-value: 9.0E-7
score: 29.7
IPR039438At2g23090-like, zinc-binding domainPFAMPF12907zf-met2coord: 38..75
e-value: 3.4E-19
score: 68.6
IPR026939ZNF706/At2g23090 superfamilyGENE3D4.10.1050.10coord: 1..77
e-value: 4.7E-32
score: 112.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availablePANTHERPTHR33788:SF17SUBFAMILY NOT NAMEDcoord: 1..76
NoneNo IPR availableSUPERFAMILY118359Expressed protein At2g23090/F21P24.15coord: 1..76
IPR039713At2g23090-likePANTHERPTHR33788OS07G0114300 PROTEINcoord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0013002.1Sed0013002.1mRNA