Sed0012962 (gene) Chayote v1

Overview


Name	Sed0012962
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DUF295 domain-containing protein
Location	LG10: 9256146 .. 9256956 (-)
RNA-Seq Expression	Sed0012962
Synteny	Sed0012962

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGCGAGCTGGTTAGCTAAGGTGGAGAGTACAAAGTTCGGTGAAATCCATTTTCGGACGTGCATGCTATCATTTGAAAGCTATTTTGGTAAACCTTTGAAATTTTTAAAAAATCCTCGTAAAGCCAACTGGCTCGATCTTCGTTTTCACGAAGTAGCTAGATCGTATTCGCTCGAAAACTTCTATATTGGTTGTGATGTTCATGGAGTTACCAAGGTTGTACTGTCTCCTGATTCTCTTTGGACCGATCGCAACAACTGCACCATTGTAGCCATTTACAATGGAGGGACACTAGGGTTTGCTAAACACAAAGGGCAAAATTGGACGCTAATTGATGAACATAACTTTGATTATGATGATTTGATTGTGTACAAGGAGCAGATTCTTACAGTTAACAGACAAGAAAACGATTGGTGGAGTGCGGTGGCGATCTCTACCTCGTGGAAGGATTGACAGGGGATTTCCTTAGGGATTCACACTTGAATCCAATCATTCCGTCCTCAGGTGAAAAAATCGGTTTCTATGTTTTCGATAGGGCTCCGCACTCGGATGCAATCGCGGGTGAAATGGAATTTGAATATCTCCTTCCAGGTCTGTCCTCGTATAAAATCGGGCTAGAGGATCTGTATAGGGATCCTCCGTGCATAACGACATTTGTTCCGTCTTCAACCATAATTCATTTCAATGTGTACAGGCTGATCCAGAAACAGGGAAGATGGGAGGAGGTGAGGGATTTGGGAGATCATGCCTTTCTTTTGGGGATAGATTGTTGTTTCTCAGTTTCAGCCCCAAAAAGTGTTGGACTTGA

mRNA sequence

ATGCCGGCGAGCTGGTTAGCTAAGGTGGAGAGTACAAAGTTCGGTGAAATCCATTTTCGGACGTGCATGCTATCATTTGAAAGCTATTTTGGTAAACCTTTGAAATTTTTAAAAAATCCTCGTAAAGCCAACTGGCTCGATCTTCGTTTTCACGAAGTAGCTAGATCGTATTCGCTCGAAAACTTCTATATTGGTTGTGATGTTCATGGAGTTACCAAGGTTGTACTGTCTCCTGATTCTCTTTGGACCGATCGCAACAACTGCACCATTGTAGCCATTTACAATGGAGGGACACTAGGGTTTGCTAAACACAAAGGGCAAAATTGGACGCTAATTGATGAACATAACTTTGATTATGATGATTTGATTGTGTACAAGGAGCAGATTCTTACAGTTAACAGACAAGAAAACGATTGGTGGAGTGCGGTGAAAAAATCGGTTTCTATGTTTTCGATAGGGCTCCGCACTCGGATGCAATCGCGGGTGAAATGGAATTTGAATATCTCCTTCCAGGCTGATCCAGAAACAGGGAAGATGGGAGGAGGTGAGGGATTTGGGAGATCATGCCTTTCTTTTGGGGATAGATTGTTGTTTCTCAGTTTCAGCCCCAAAAAGTGTTGGACTTGA

Coding sequence (CDS)

ATGCCGGCGAGCTGGTTAGCTAAGGTGGAGAGTACAAAGTTCGGTGAAATCCATTTTCGGACGTGCATGCTATCATTTGAAAGCTATTTTGGTAAACCTTTGAAATTTTTAAAAAATCCTCGTAAAGCCAACTGGCTCGATCTTCGTTTTCACGAAGTAGCTAGATCGTATTCGCTCGAAAACTTCTATATTGGTTGTGATGTTCATGGAGTTACCAAGGTTGTACTGTCTCCTGATTCTCTTTGGACCGATCGCAACAACTGCACCATTGTAGCCATTTACAATGGAGGGACACTAGGGTTTGCTAAACACAAAGGGCAAAATTGGACGCTAATTGATGAACATAACTTTGATTATGATGATTTGATTGTGTACAAGGAGCAGATTCTTACAGTTAACAGACAAGAAAACGATTGGTGGAGTGCGGTGAAAAAATCGGTTTCTATGTTTTCGATAGGGCTCCGCACTCGGATGCAATCGCGGGTGAAATGGAATTTGAATATCTCCTTCCAGGCTGATCCAGAAACAGGGAAGATGGGAGGAGGTGAGGGATTTGGGAGATCATGCCTTTCTTTTGGGGATAGATTGTTGTTTCTCAGTTTCAGCCCCAAAAAGTGTTGGACTTGA

Protein sequence

MPASWLAKVESTKFGEIHFRTCMLSFESYFGKPLKFLKNPRKANWLDLRFHEVARSYSLENFYIGCDVHGVTKVVLSPDSLWTDRNNCTIVAIYNGGTLGFAKHKGQNWTLIDEHNFDYDDLIVYKEQILTVNRQENDWWSAVKKSVSMFSIGLRTRMQSRVKWNLNISFQADPETGKMGGGEGFGRSCLSFGDRLLFLSFSPKKCWT

Homology

[Close]

BLAST of Sed0012962 vs. NCBI nr
Match: XP_038881861.1 (putative F-box protein At1g65770 [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-24
Identity = 68/147 (46.26%), Postives = 88/147 (59.86%), Query Frame = 0


Query: 5   WLAKVESTKFGEIHFRTCMLSFESYFGKPLKFLKNPRKANWLDLRFHEVARSYSLENFYI 64
           WLAKVESTK G++ F   + +  + +   L F K   + N LD   +EVA+SY+L  +  
Sbjct: 115 WLAKVESTKLGKMRFLHPLSTRYAKYNNEL-FRK---EVNLLDFGIYEVAKSYTL-GYTN 174

Query: 65  GCDVHGVTKVVLSPDSLWTDRNNCTIVAIYNGGTLGFAKHKGQNWTLIDEHNFDYDDLIV 124
           G  V  +TKVV+ PDS W D  NCTI+A+Y GG LGFAKH    WTLID+ NF YDD+IV
Sbjct: 175 GALVPRITKVVMFPDSPWIDVKNCTILAVYAGGKLGFAKHGDDKWTLIDDRNFHYDDVIV 234

Query: 125 YKEQILTVNRQENDWWSAVKKSVSMFS 152
           YK Q   V+R    +W      +  FS
Sbjct: 235 YKGQFYAVDRWGTVFWIDSSMKLVQFS 256

[Close]

BLAST of Sed0012962 vs. NCBI nr
Match: XP_023003897.1 (putative F-box protein At1g65770 isoform X1 [Cucurbita maxima])

HSP 1 Score: 121.3 bits (303), Expect = 9.7e-24
Identity = 66/148 (44.59%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 5   WLAKVESTKFGEIHF-RTCMLSFESYFGKPLKFLKNPRKANWLDLRFHEVARSYSLENFY 64
           WLAKVESTK G + F       +  Y  +  +     ++ N LD R +EVA+SY+L  + 
Sbjct: 102 WLAKVESTKLGTMRFLHPLSTRYVKYDNEVFR-----KEVNLLDFRIYEVAKSYTL-GYI 161

Query: 65  IGCDVHGVTKVVLSPDSLWTDRNNCTIVAIYNGGTLGFAKHKGQNWTLIDEHNFDYDDLI 124
            G  V  +TKVV+ PD  W D   CTIVA+Y GG LGFAKH    WTLID+ NF YDD+I
Sbjct: 162 NGALVPRITKVVMFPDCPWIDVKYCTIVAVYAGGKLGFAKHGDYKWTLIDDRNFHYDDVI 221

Query: 125 VYKEQILTVNRQENDWWSAVKKSVSMFS 152
           VYK Q   V+R    +W      +  FS
Sbjct: 222 VYKGQFYAVDRWGTIFWIDSSMRLVQFS 243

[Close]

BLAST of Sed0012962 vs. NCBI nr
Match: XP_022926986.1 (putative F-box protein At1g65770 isoform X1 [Cucurbita moschata])

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-23
Identity = 66/148 (44.59%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 5   WLAKVESTKFGEIHF-RTCMLSFESYFGKPLKFLKNPRKANWLDLRFHEVARSYSLENFY 64
           WLAKVESTK G + F       +  Y  +  +     ++ N LD R +EVA+SY+L  + 
Sbjct: 102 WLAKVESTKLGTMRFLHPLSTRYVKYDNEVFR-----KEVNLLDFRIYEVAKSYTL-GYT 161

Query: 65  IGCDVHGVTKVVLSPDSLWTDRNNCTIVAIYNGGTLGFAKHKGQNWTLIDEHNFDYDDLI 124
            G  V  +TKVV+ PD  W D   CTIVA+Y GG LGFAKH    WTLID+ NF YDD+I
Sbjct: 162 NGALVPRITKVVMFPDCPWIDVKYCTIVAVYAGGKLGFAKHGDYKWTLIDDRNFHYDDVI 221

Query: 125 VYKEQILTVNRQENDWWSAVKKSVSMFS 152
           VYK Q   V+R    +W      +  FS
Sbjct: 222 VYKGQFYAVDRWGTIFWIDSSMRLVQFS 243

[Close]

BLAST of Sed0012962 vs. NCBI nr
Match: KAG6594746.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-23
Identity = 66/148 (44.59%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 5   WLAKVESTKFGEIHF-RTCMLSFESYFGKPLKFLKNPRKANWLDLRFHEVARSYSLENFY 64
           WLAKVESTK G + F       +  Y  +  +     ++ N LD R +EVA+SY+L  + 
Sbjct: 102 WLAKVESTKLGTMRFLHPLSTRYVKYDNEVFR-----KEVNLLDFRIYEVAKSYTL-GYT 161

Query: 65  IGCDVHGVTKVVLSPDSLWTDRNNCTIVAIYNGGTLGFAKHKGQNWTLIDEHNFDYDDLI 124
            G  V  +TKVV+ PD  W D   CTIVA+Y GG LGFAKH    WTLID+ NF YDD+I
Sbjct: 162 NGALVPRITKVVMFPDCPWIDVKYCTIVAVYAGGKLGFAKHGDYKWTLIDDRNFHYDDVI 221

Query: 125 VYKEQILTVNRQENDWWSAVKKSVSMFS 152
           VYK Q   V+R    +W      +  FS
Sbjct: 222 VYKGQFYAVDRWGTIFWIDSSMRLVQFS 243

[Close]

BLAST of Sed0012962 vs. NCBI nr
Match: XP_023518907.1 (putative F-box protein At1g65770 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-23
Identity = 66/148 (44.59%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 5   WLAKVESTKFGEIHF-RTCMLSFESYFGKPLKFLKNPRKANWLDLRFHEVARSYSLENFY 64
           WLAKVESTK G + F       +  Y  +  +     ++ N LD R +EVA+SY+L  + 
Sbjct: 102 WLAKVESTKLGTMRFLHPLSTRYVKYDNEVFR-----KEVNLLDFRIYEVAKSYTL-GYT 161

Query: 65  IGCDVHGVTKVVLSPDSLWTDRNNCTIVAIYNGGTLGFAKHKGQNWTLIDEHNFDYDDLI 124
            G  V  +TKVV+ PD  W D   CTIVA+Y GG LGFAKH    WTLID+ NF YDD+I
Sbjct: 162 NGALVPRITKVVMFPDCPWIDVKYCTIVAVYAGGKLGFAKHGDYKWTLIDDRNFHYDDVI 221

Query: 125 VYKEQILTVNRQENDWWSAVKKSVSMFS 152
           VYK Q   V+R    +W      +  FS
Sbjct: 222 VYKGQFYAVDRWGTIFWIDSSMRLVQFS 243

[Close]

BLAST of Sed0012962 vs. ExPASy TrEMBL
Match: A0A6J1KNW7 (putative F-box protein At1g65770 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497348 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.7e-24
Identity = 66/148 (44.59%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 5   WLAKVESTKFGEIHF-RTCMLSFESYFGKPLKFLKNPRKANWLDLRFHEVARSYSLENFY 64
           WLAKVESTK G + F       +  Y  +  +     ++ N LD R +EVA+SY+L  + 
Sbjct: 102 WLAKVESTKLGTMRFLHPLSTRYVKYDNEVFR-----KEVNLLDFRIYEVAKSYTL-GYI 161

Query: 65  IGCDVHGVTKVVLSPDSLWTDRNNCTIVAIYNGGTLGFAKHKGQNWTLIDEHNFDYDDLI 124
            G  V  +TKVV+ PD  W D   CTIVA+Y GG LGFAKH    WTLID+ NF YDD+I
Sbjct: 162 NGALVPRITKVVMFPDCPWIDVKYCTIVAVYAGGKLGFAKHGDYKWTLIDDRNFHYDDVI 221

Query: 125 VYKEQILTVNRQENDWWSAVKKSVSMFS 152
           VYK Q   V+R    +W      +  FS
Sbjct: 222 VYKGQFYAVDRWGTIFWIDSSMRLVQFS 243

[Close]

BLAST of Sed0012962 vs. ExPASy TrEMBL
Match: A0A6J1EGF3 (putative F-box protein At1g65770 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433939 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-24
Identity = 66/148 (44.59%), Postives = 84/148 (56.76%), Query Frame = 0


Query: 5   WLAKVESTKFGEIHF-RTCMLSFESYFGKPLKFLKNPRKANWLDLRFHEVARSYSLENFY 64
           WLAKVESTK G + F       +  Y  +  +     ++ N LD R +EVA+SY+L  + 
Sbjct: 102 WLAKVESTKLGTMRFLHPLSTRYVKYDNEVFR-----KEVNLLDFRIYEVAKSYTL-GYT 161

Query: 65  IGCDVHGVTKVVLSPDSLWTDRNNCTIVAIYNGGTLGFAKHKGQNWTLIDEHNFDYDDLI 124
            G  V  +TKVV+ PD  W D   CTIVA+Y GG LGFAKH    WTLID+ NF YDD+I
Sbjct: 162 NGALVPRITKVVMFPDCPWIDVKYCTIVAVYAGGKLGFAKHGDYKWTLIDDRNFHYDDVI 221

Query: 125 VYKEQILTVNRQENDWWSAVKKSVSMFS 152
           VYK Q   V+R    +W      +  FS
Sbjct: 222 VYKGQFYAVDRWGTIFWIDSSMRLVQFS 243

[Close]

BLAST of Sed0012962 vs. ExPASy TrEMBL
Match: A0A5A7SHJ7 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G00810 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 66/147 (44.90%), Postives = 85/147 (57.82%), Query Frame = 0


Query: 5   WLAKVESTKFGEIHFRTCMLSFESYFGKPLKFLKNPRKANWLDLRFHEVARSYSLENFYI 64
           WLAKVESTK G++ F   +    + + K    L   ++ N LD   +EVA+SY+L  +  
Sbjct: 110 WLAKVESTKLGKMRF---LHPLSTRYAKCNSDLFR-KEVNLLDFGIYEVAKSYTL-GYTN 169

Query: 65  GCDVHGVTKVVLSPDSLWTDRNNCTIVAIYNGGTLGFAKHKGQNWTLIDEHNFDYDDLIV 124
           G  V  +TKVV+ PDS W D   CTI+A+Y GG LGFAKH    WTLID  NF YDD+IV
Sbjct: 170 GSPVPRITKVVMFPDSPWIDVKKCTILAVYAGGKLGFAKHGDDKWTLIDHRNFHYDDVIV 229

Query: 125 YKEQILTVNRQENDWWSAVKKSVSMFS 152
           YK Q   V+R    +W      +  FS
Sbjct: 230 YKGQFYAVDRWGTVFWIDSSMRLVQFS 251

[Close]

BLAST of Sed0012962 vs. ExPASy TrEMBL
Match: A0A1S4DT77 (putative F-box protein At1g65770 OS=Cucumis melo OX=3656 GN=LOC103485361 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 66/147 (44.90%), Postives = 85/147 (57.82%), Query Frame = 0


Query: 5   WLAKVESTKFGEIHFRTCMLSFESYFGKPLKFLKNPRKANWLDLRFHEVARSYSLENFYI 64
           WLAKVESTK G++ F   +    + + K    L   ++ N LD   +EVA+SY+L  +  
Sbjct: 110 WLAKVESTKLGKMRF---LHPLSTRYAKCNSDLFR-KEVNLLDFGIYEVAKSYTL-GYTN 169

Query: 65  GCDVHGVTKVVLSPDSLWTDRNNCTIVAIYNGGTLGFAKHKGQNWTLIDEHNFDYDDLIV 124
           G  V  +TKVV+ PDS W D   CTI+A+Y GG LGFAKH    WTLID  NF YDD+IV
Sbjct: 170 GSPVPRITKVVMFPDSPWIDVKKCTILAVYAGGKLGFAKHGDDKWTLIDHRNFHYDDVIV 229

Query: 125 YKEQILTVNRQENDWWSAVKKSVSMFS 152
           YK Q   V+R    +W      +  FS
Sbjct: 230 YKGQFYAVDRWGTVFWIDSSMRLVQFS 251

[Close]

BLAST of Sed0012962 vs. ExPASy TrEMBL
Match: A0A0A0KJJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507420 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.0e-23
Identity = 67/147 (45.58%), Postives = 85/147 (57.82%), Query Frame = 0


Query: 5   WLAKVESTKFGEIHFRTCMLSFESYFGKPLKFLKNPRKANWLDLRFHEVARSYSLENFYI 64
           WLAKVESTK G++ F   +    + + K    L   ++ N LD   +EVA+SY+L  +  
Sbjct: 113 WLAKVESTKLGKMRF---LHPLSTRYAKCNSDLLR-KEVNLLDFGIYEVAKSYTL-GYTN 172

Query: 65  GCDVHGVTKVVLSPDSLWTDRNNCTIVAIYNGGTLGFAKHKGQNWTLIDEHNFDYDDLIV 124
           G  V  +TKVV+ PDS W D   CTI+AIY GG LGFAKH    WTLID  NF YDD+IV
Sbjct: 173 GSLVPRITKVVMFPDSPWIDVKKCTILAIYAGGKLGFAKHGDNKWTLIDHCNFHYDDVIV 232

Query: 125 YKEQILTVNRQENDWWSAVKKSVSMFS 152
           YK Q   V+R    +W      +  FS
Sbjct: 233 YKGQFYAVDRWGTIFWIDSSMKLVQFS 254

The following BLAST results are available for this feature:

BLAST of Sed0012962 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881861.1	1.5e-24	46.26	putative F-box protein At1g65770 [Benincasa hispida]	[more]
XP_023003897.1	9.7e-24	44.59	putative F-box protein At1g65770 isoform X1 [Cucurbita maxima]	[more]
XP_022926986.1	1.3e-23	44.59	putative F-box protein At1g65770 isoform X1 [Cucurbita moschata]	[more]
KAG6594746.1	1.3e-23	44.59	putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023518907.1	1.3e-23	44.59	putative F-box protein At1g65770 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0012962 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0012962 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KNW7	4.7e-24	44.59	putative F-box protein At1g65770 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1EGF3	6.1e-24	44.59	putative F-box protein At1g65770 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5A7SHJ7	1.8e-23	44.90	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S4DT77	1.8e-23	44.90	putative F-box protein At1g65770 OS=Cucumis melo OX=3656 GN=LOC103485361 PE=4 SV...	[more]
A0A0A0KJJ1	4.0e-23	45.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507420 PE=4 SV=1	[more]

BLAST of Sed0012962 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47123:SF14	BINDING PROTEIN, PUTATIVE-RELATED	coord: 44..151
None	No IPR available	PANTHER	PTHR47123	F-BOX PROTEIN SKIP23	coord: 44..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012962.1	Sed0012962.1	mRNA