Sed0012921 (gene) Chayote v1

Overview


Name	Sed0012921
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Protein RER1
Location	LG10: 4558680 .. 4562084 (-)
RNA-Seq Expression	Sed0012921
Synteny	Sed0012921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGTACAGCGGCCGGCGTTGGTCTCGGCGCCGCCGAAGACGTTTCTTCCACCACCCTTTTCTCACGGTGGAGGCATGCCATTTCCCGCCGGTATCAGCACCTCCTCGACAAATGTACCCCATTCATTTTCCACCGTTGGATCGCCTGCTTCTTCATCGCATCCATCTATGTTCTTCGTGTCTACCTCATCTAAGGATTCTACGTCGTCTCTTATGGCCTCGGAATTTACATCCTCAATCTTCTTATCGGATTTCTCTCCCCCCCCCAAGTCGATCCTGAGATCATGGATCTTACGGACGACCCTGCGCTCCCCGTTAGGGAATCCGATGAGTTTCGCCCCTTCGTTCGCAGGCTCCCCGAGTTTAAGTTCTGGTACGTTCTGGTTTCTGATTGCGAGTGTTTTTTGTTCTTTCGATTGGGGATTGGTTGTGTAATTATGATCTTTGGAGGTTTGGTTTGGTTTTAGGATGTGGGTAATTGTTGGATTGGAGCTACGAGCTTGTATGGGTCGGATTTCTTTTAACTTTTCATCTATAAGATGTGGATTTGATAAGGATTGGATCGATTGGAGCTGGGGTACCTAAATGATTTTCGCGTTTGATATTCTTATGTTTGCTAAGTTTGATCTCCTTAATTTTCTTAGCTCAAAATCCTGACTTGTTGAATGAGATTAAAGCTGTAATGGTTCAATCTAAGGGATTCCCTCTTGAAAGTCACATATTCGAAACTCACTTATGAGTTTAATTGTAAAATGACTTGTTGTTTCCCGATTTCATATCTTGGAATGGGTGTGGATGCCCGCGGGTTATCGGTTATGTAGTAGGGCTAAAGTCCGATTCCCGCTTATCAAGAAAAAAAAAAAAAGCTGATGGTCCTACATTATTTTTTCAGTTCAGATTTTCTTATATTTATCTGAACCTGAACTTGGTATATGTTATAATGTTTAAGCTTTGCGCCTTGGTCCTAGACTGTCCTAGCTAGCTTTTGACCTGTATCATTGTCCATTTAAGAGGATCTTTTTTGGTCCTTCAACTCTCTGCCCGTGAAGTTATTTTATCAAATATGGCTGTCACCACCTGTACTTCATTGGATCTAAGAGGGAGAAATTTATAACTATTTTTTAACTGTGTATTTAACGGTTATAAGATTGACGAGTACATTGGAGGAGAACCGAAAGTAAAGAAAAAACCTTGTAACATTAACCAAGTAGTTGGTACTTATGGTAAACACTTCAAAGATTCTAGCCTGCTTAAGATGTATGATGTTTCCTATAAAAGATATAGCCTCAATTATTGAGCATGTTAGATTAATGATAGAGCCTTGGGATTTTCATGTGTCCTTTACGATGTTTTAATTGCTTACACTTTTCTTAACCTTGTTACGTACCTTGATCTTCCACATATGACATATATACAACTTCTGGTAGCATTGCAGTGATTCGTTTAGGATAGCTGTTAAACCTTGAATTTTTTTATGCCCAAAAACCAAAACACATGAAGAAAGTTCCCAAAGTGCAATATTATCATTTATCAGTCAAATCCTCTGTTTATTTGCATATTGATGGCCTGTATTTATAAAGGTTTAGTTTTAACACGCACGTAACTGAATGCCTAATCTTCTAAAATTTCCTCATCAAGAAGAATATCTACCAACAAATTCAATGAAATAAAGAGAAGATTCCGTAGACTTGGTCAGTTGGGTTAGGCTTTTATTGGAAGAGACCGCCACAATGTGGTTGAAAATTTTGTATGGTTGGATGGTCCCTAAGGGGTAGTACGGTGGTTGAAGACTTGGGTTTTAAAGGTATGCTCCTTTCAAGGTCACAGGTTCGAGACTTACATGTGACATAACTCCTTTGATTTTTTTGGTGCCTGGCCTAGAGATGGATGTGGTTACCCTTGTTTCAAATTTTTTTTTTGTATGGTTGGATGTATGAAAGTGAAACTACCAAAATATTTTGAATCTATATTGATTGGTTACTAAAAGATGTGCAGATTTTTTTTAATAATGTTTTTCTGGTTAAGCTTGTTGATCAAAGTAATCATTAAGAATAGAAGGTCAATCTATGGGCGGCATGCCTTGAGGGTATGCTCTTCTTGAGATCCCAGGTTCAGGGTGGTTGTGGAAATTAATTTTCCAAGCAACCCCAAATTTTGCCTCTGTTTCCTACATTGTCTCCCGGTGCCTTGCCTAGGGATGGACATGGTTACTCAGGGTATTGGGGAGTGAAACTCCGATGTCTCGGTTTCCAAAAGTGAAAAAACGTTGGTAATGTTCACTTCCTTTCTTTTTTGAAGGTAATCAATCACCAAAGCCTTTTGAATTGCTTTTCTGATGACATTCTCCAGTGCATTTGATGTACCTGTATTCTGGTCTATCCTTCTATTTTACTGGGTGGTTCTGTTCACTCTCACCATGAGGAGACAGATATTGCATATGATCAAATATAAATTTGTCCCGTTCTCCATTGGTAAACAGGTAAAAATTTTCAATCCCAGTAATTTCTCAGCTGTCTTGGTCTTCTTTCATCCATTGTTTCCATGCGATTACGAACTTTTAACGGTTTTCTTTATTTCTCAATAGTGATATGATGGAAAGGATTCAGCTTCAAGCGAAACCAAGAACCTTCTGAAGGATTGATGAACTCTTTGGGTAGATTAATAGTAGTAATTGTTTGTCTCAGGTAGAACTAGTAAACTTCATTTGTTCTGTTGTATTCTTGTTGACTGTTAGTTCTTCATGAGTTAGGCTGATCATCTGCTGGTTCTTCATTTCTCCTGATCTTTGTAATGAATACAAGTTTCAAGTAGTAGATAGTATGGTTGCTGAATTTTCCCCTTCTCTTCATGGCAGATTTGTTCAAGTTGTAAAAATAAACTATTATCCCATCATCTGTGGGAAAAGTTAATTCAAAACCATCATTTTTTTAGTTTGTTCACAGGAAAGCTATTCTTGAAGAAAGAAAAAGAAGAGATAAAAACTTCTGGTTTTGTTAGCAGATGAACAATCTCAGACTTTACCATAAAGATTTTGCGGATTAGCTTGCTAGATCTCTGTTCTTATAATTTTATTATATTTATCAGTACTTCTTGCCAATATTGGTTGTGCTGGTTGAACCATTTGGTAATTTAGTTTGTTTGTGGCTGAATATTGAACTTATGTCCATAAGCATTGACCTTCTTATTATAATTCATTTCTGCTATTAGGAACTTGTAACTTTGGTTCCAGATTTTGGAATTTTATTTGCTTTCTAGTCCAACTGATAAGCTGTAAGTGTCAAAATAACTCGATCACTTTCACAAGGAATTTTCTACACACAAGTTCTCGTGTACAAAAGCAAAAACAGAACTTTGTTCTCAAATTCAATAAAAAAAATTGGCTTCACCCAGACTCGAACTAA

mRNA sequence

ATGGAAAGTACAGCGGCCGGCGTTGGTCTCGGCGCCGCCGAAGACGTTTCTTCCACCACCCTTTTCTCACGGTGGAGGCATGCCATTTCCCGCCGGTATCAGCACCTCCTCGACAAATGTACCCCATTCATTTTCCACCGATTCTACGTCGTCTCTTATGGCCTCGGAATTTACATCCTCAATCTTCTTATCGGATTTCTCTCCCCCCCCCAAGTCGATCCTGAGATCATGGATCTTACGGACGACCCTGCGCTCCCCGTTAGGGAATCCGATGAGTTTCGCCCCTTCGTTCGCAGGCTCCCCGAGTTTAAGTTCTGTGCATTTGATGTACCTGTATTCTGGTCTATCCTTCTATTTTACTGGGTGGTTCTGTTCACTCTCACCATGAGGAGACAGATATTGCATATGATCAAATATAAATTTGTCCCGTTCTCCATTGGTAAACAGTGTCAAAATAACTCGATCACTTTCACAAGGAATTTTCTACACACAAGTTCTCGTGTACAAAAGCAAAAACAGAACTTTGTTCTCAAATTCAATAAAAAAAATTGGCTTCACCCAGACTCGAACTAA

Coding sequence (CDS)

ATGGAAAGTACAGCGGCCGGCGTTGGTCTCGGCGCCGCCGAAGACGTTTCTTCCACCACCCTTTTCTCACGGTGGAGGCATGCCATTTCCCGCCGGTATCAGCACCTCCTCGACAAATGTACCCCATTCATTTTCCACCGATTCTACGTCGTCTCTTATGGCCTCGGAATTTACATCCTCAATCTTCTTATCGGATTTCTCTCCCCCCCCCAAGTCGATCCTGAGATCATGGATCTTACGGACGACCCTGCGCTCCCCGTTAGGGAATCCGATGAGTTTCGCCCCTTCGTTCGCAGGCTCCCCGAGTTTAAGTTCTGTGCATTTGATGTACCTGTATTCTGGTCTATCCTTCTATTTTACTGGGTGGTTCTGTTCACTCTCACCATGAGGAGACAGATATTGCATATGATCAAATATAAATTTGTCCCGTTCTCCATTGGTAAACAGTGTCAAAATAACTCGATCACTTTCACAAGGAATTTTCTACACACAAGTTCTCGTGTACAAAAGCAAAAACAGAACTTTGTTCTCAAATTCAATAAAAAAAATTGGCTTCACCCAGACTCGAACTAA

Protein sequence

MESTAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHRFYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRLPEFKFCAFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVPFSIGKQCQNNSITFTRNFLHTSSRVQKQKQNFVLKFNKKNWLHPDSN

Homology

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BLAST of Sed0012921 vs. NCBI nr
Match: XP_023544323.1 (protein RER1A-like [Cucurbita pepo subsp. pepo] >XP_023544324.1 protein RER1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.4 bits (607), Expect = 5.0e-59
Identity = 130/186 (69.89%), Postives = 138/186 (74.19%), Query Frame = 0


Query: 1   MESTAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR------------- 60
           MES AAGV LGAAEDV STTLFSRW HA+SRRYQHLLD+CTP+IF+R             
Sbjct: 1   MESDAAGVRLGAAEDVYSTTLFSRWSHAVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  -------FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRL 120
                  FY+VSYGLGIYILNLLIGFLS PQVDPEI+DL D PALP+RESDEFRPFVRRL
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLS-PQVDPEILDLHDGPALPLRESDEFRPFVRRL 120

Query: 121 PEFK-----------------FCAFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVP 150
           PEFK                 F AFDVPVFW ILLFYWVVLFTLTMRRQI HMIKYK+VP
Sbjct: 121 PEFKFWYSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVP 180

[Close]

BLAST of Sed0012921 vs. NCBI nr
Match: XP_022949760.1 (protein RER1A-like [Cucurbita moschata] >XP_022949761.1 protein RER1A-like [Cucurbita moschata] >KAG6604161.1 Protein RER1A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238.4 bits (607), Expect = 5.0e-59
Identity = 129/186 (69.35%), Postives = 137/186 (73.66%), Query Frame = 0


Query: 1   MESTAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR------------- 60
           MES AAGVGLG AEDV STTLFSRW H +SRRYQHLLD+CTP+IF+R             
Sbjct: 1   MESEAAGVGLGGAEDVYSTTLFSRWSHGVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  -------FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRL 120
                  FY+VSYGLGIYILNLLIGFLS PQVDPEI+DL D PALP+RESDEFRPFVRRL
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLS-PQVDPEILDLHDGPALPLRESDEFRPFVRRL 120

Query: 121 PEFK-----------------FCAFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVP 150
           PEFK                 F AFDVPVFW ILLFYWVVLFTLTMRRQI HMIKYK+VP
Sbjct: 121 PEFKFWYSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVP 180

[Close]

BLAST of Sed0012921 vs. NCBI nr
Match: XP_022977598.1 (protein RER1A-like [Cucurbita maxima] >XP_022977599.1 protein RER1A-like [Cucurbita maxima])

HSP 1 Score: 237.7 bits (605), Expect = 8.5e-59
Identity = 129/186 (69.35%), Postives = 138/186 (74.19%), Query Frame = 0


Query: 1   MESTAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR------------- 60
           MES AAGVGL AAE VSSTTLF+RW HA+SRRYQHLLD+CTP+IF+R             
Sbjct: 1   MESEAAGVGLNAAEGVSSTTLFARWSHAVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  -------FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRL 120
                  FY+VSYGLGIYILNLLIGFLS PQVDPEI+DL D PALP+RESDEFRPFVRRL
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLS-PQVDPEILDLHDGPALPLRESDEFRPFVRRL 120

Query: 121 PEFK-----------------FCAFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVP 150
           PEFK                 F AFDVPVFW ILLFYWVVLFTLTMRRQI HMIKYK+VP
Sbjct: 121 PEFKFWYSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVP 180

[Close]

BLAST of Sed0012921 vs. NCBI nr
Match: XP_038880923.1 (protein RER1A-like [Benincasa hispida] >XP_038880924.1 protein RER1A-like [Benincasa hispida])

HSP 1 Score: 237.7 bits (605), Expect = 8.5e-59
Identity = 131/186 (70.43%), Postives = 139/186 (74.73%), Query Frame = 0


Query: 1   MESTAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR------------- 60
           ME  AAGVGLGAAEDVSSTTLFSR  HA+SRRYQHLLD+CTP+IF+R             
Sbjct: 1   MEGVAAGVGLGAAEDVSSTTLFSRLSHAVSRRYQHLLDRCTPYIFYRWIACFFIASIYVL 60

Query: 61  -------FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRL 120
                  FY+VSYGLGIYILNLLIGFLS PQVDPEI+DL + PALPVRESDEFRPFVRRL
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLS-PQVDPEILDLNEGPALPVRESDEFRPFVRRL 120

Query: 121 PEFK--------FC---------AFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVP 150
           PEFK        FC         AFDVPVFW ILLFYWVVLFTLTMRRQI HMIKYK+VP
Sbjct: 121 PEFKFWYSITKAFCIAFLMTFFNAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVP 180

[Close]

BLAST of Sed0012921 vs. NCBI nr
Match: KAG7034324.1 (Protein RER1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.7 bits (600), Expect = 3.2e-58
Identity = 128/186 (68.82%), Postives = 136/186 (73.12%), Query Frame = 0


Query: 1   MESTAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR------------- 60
           MES AAGVGLG A DV STTLFSRW H +SRRYQHLLD+CTP+IF+R             
Sbjct: 1   MESEAAGVGLGGAGDVYSTTLFSRWSHGVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  -------FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRL 120
                  FY+VSYGLGIYILNLLIGFLS PQVDPEI+DL D PALP+RESDEFRPFVRRL
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLS-PQVDPEILDLHDGPALPLRESDEFRPFVRRL 120

Query: 121 PEFK-----------------FCAFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVP 150
           PEFK                 F AFDVPVFW ILLFYWVVLFTLTMRRQI HMIKYK+VP
Sbjct: 121 PEFKFWYSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVP 180

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BLAST of Sed0012921 vs. ExPASy Swiss-Prot
Match: O48670 (Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-36
Identity = 86/160 (53.75%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 27  HAISRRYQHLLDKCTPFIFHR--------------------FYVVSYGLGIYILNLLIGF 86
           H   R YQH LDK TP   +R                    FY+++YGLGIY+LNLLIGF
Sbjct: 20  HEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGF 79

Query: 87  LSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRLPEFK-----------------FCAFD 146
           LS P VDPE   ++D P+LP R SDEF+PF+RRLPEFK                 F  FD
Sbjct: 80  LS-PLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFD 139

Query: 147 VPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVPFSIGKQ 150
           VPVFW ILL YW+VLF LTMRRQI HMIKYK++PFS GKQ
Sbjct: 140 VPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQ 178

[Close]

BLAST of Sed0012921 vs. ExPASy Swiss-Prot
Match: O48671 (Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 1.4e-35
Identity = 86/160 (53.75%), Postives = 100/160 (62.50%), Query Frame = 0


Query: 27  HAISRRYQHLLDKCTP--------------------FIFHRFYVVSYGLGIYILNLLIGF 86
           H   R YQ+ LDK TP                    +  H FY++SYGLGIY+LNLLIGF
Sbjct: 20  HEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGF 79

Query: 87  LSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRLPEFK-----------------FCAFD 146
           LS P VDPE ++++D   LP R SDEF+PF+RRLPEFK                 F  FD
Sbjct: 80  LS-PLVDPE-LEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFD 139

Query: 147 VPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVPFSIGKQ 150
           VPVFW ILL YWVVLF LTMRRQI HMIK+K++PFSIGKQ
Sbjct: 140 VPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQ 177

[Close]

BLAST of Sed0012921 vs. ExPASy Swiss-Prot
Match: Q9ZWI7 (Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-35
Identity = 88/184 (47.83%), Postives = 109/184 (59.24%), Query Frame = 0


Query: 3   STAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR--------------- 62
           +TA    L +++  S     +R  HA S+R QHLLDK  P + +R               
Sbjct: 18  ATATDDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRV 77

Query: 63  -----FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRLPE 122
                FY+++Y +GIY+LNL+I FLS PQ DPE   LT   +LP R SDE+RPFVRRLPE
Sbjct: 78  YFVEGFYIITYAIGIYLLNLIIAFLS-PQEDPE-ASLTSGGSLPTRRSDEYRPFVRRLPE 137

Query: 123 FKFC-----------------AFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVPFS 150
           FKF                   FDVPVFW ILLFYWV+LF LTMR+QI HMIKY++VPFS
Sbjct: 138 FKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 197

[Close]

BLAST of Sed0012921 vs. ExPASy Swiss-Prot
Match: Q9ZPV7 (Protein RER1D OS=Arabidopsis thaliana OX=3702 GN=At2g18240 PE=2 SV=2)

HSP 1 Score: 130.2 bits (326), Expect = 2.5e-29
Identity = 80/180 (44.44%), Postives = 106/180 (58.89%), Query Frame = 0


Query: 23  SRWRHAISRRYQHLLDKCTPFIFHR--------------------FYVVSYGLGIYILNL 82
           ++WR   S+ +Q+ LD+  P I  R                    ++V+SYGL  YILNL
Sbjct: 20  AKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATYILNL 79

Query: 83  LIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRLPEFKF---------CAF----- 142
           LIGFLS P+VDPE ++  D  +LPV ESDE++PFVRRLPEFKF          AF     
Sbjct: 80  LIGFLS-PKVDPE-LEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVVAFVMTFF 139

Query: 143 ---DVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVPFSIGKQCQ------NNSITFTR 160
              DVPVFW ILL YW+VL++LTM+R I+HM KY++ PF + K  +      N+ +TF R
Sbjct: 140 SFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRKPVKLLKFLVNSVLTFLR 197

[Close]

BLAST of Sed0012921 vs. ExPASy Swiss-Prot
Match: Q5ZHM5 (Protein RER1 OS=Gallus gallus OX=9031 GN=RER1 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.6e-28
Identity = 72/155 (46.45%), Postives = 98/155 (63.23%), Query Frame = 0


Query: 33  YQHLLDKCTP--------------------FIFHRFYVVSYGLGIYILNLLIGFLSPPQV 92
           YQ  LDK TP                    ++   +Y+V+Y LGIY LNL I FLS P+V
Sbjct: 29  YQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLS-PKV 88

Query: 93  DPEIMDLTDD-PALPVRESDEFRPFVRRLPEFKF-------------C----AFDVPVFW 150
           DP +M+ +DD P+LP R+++EFRPF+RRLPEFKF             C    AF+VPVFW
Sbjct: 89  DPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFFEAFNVPVFW 148

[Close]

BLAST of Sed0012921 vs. ExPASy TrEMBL
Match: A0A6J1GCX4 (Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111453051 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.4e-59
Identity = 129/186 (69.35%), Postives = 137/186 (73.66%), Query Frame = 0


Query: 1   MESTAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR------------- 60
           MES AAGVGLG AEDV STTLFSRW H +SRRYQHLLD+CTP+IF+R             
Sbjct: 1   MESEAAGVGLGGAEDVYSTTLFSRWSHGVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  -------FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRL 120
                  FY+VSYGLGIYILNLLIGFLS PQVDPEI+DL D PALP+RESDEFRPFVRRL
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLS-PQVDPEILDLHDGPALPLRESDEFRPFVRRL 120

Query: 121 PEFK-----------------FCAFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVP 150
           PEFK                 F AFDVPVFW ILLFYWVVLFTLTMRRQI HMIKYK+VP
Sbjct: 121 PEFKFWYSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVP 180

[Close]

BLAST of Sed0012921 vs. ExPASy TrEMBL
Match: A0A6J1IRU9 (Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111477878 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 4.1e-59
Identity = 129/186 (69.35%), Postives = 138/186 (74.19%), Query Frame = 0


Query: 1   MESTAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR------------- 60
           MES AAGVGL AAE VSSTTLF+RW HA+SRRYQHLLD+CTP+IF+R             
Sbjct: 1   MESEAAGVGLNAAEGVSSTTLFARWSHAVSRRYQHLLDRCTPYIFYRWIACFFVASIYVL 60

Query: 61  -------FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRL 120
                  FY+VSYGLGIYILNLLIGFLS PQVDPEI+DL D PALP+RESDEFRPFVRRL
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLS-PQVDPEILDLHDGPALPLRESDEFRPFVRRL 120

Query: 121 PEFK-----------------FCAFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVP 150
           PEFK                 F AFDVPVFW ILLFYWVVLFTLTMRRQI HMIKYK+VP
Sbjct: 121 PEFKFWYSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVP 180

[Close]

BLAST of Sed0012921 vs. ExPASy TrEMBL
Match: A0A6J1KTW6 (Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111497178 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.0e-58
Identity = 129/186 (69.35%), Postives = 137/186 (73.66%), Query Frame = 0


Query: 1   MESTAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR------------- 60
           MES AAGVG GAAEDVSSTTLF+RW HA S RYQHLLD+C+P+IF+R             
Sbjct: 1   MESVAAGVGHGAAEDVSSTTLFARWSHAASCRYQHLLDRCSPYIFYRWIACFFIASIYVL 60

Query: 61  -------FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRL 120
                  FY+VSYGLGIYILNLLIGFLS PQVDPEI+DL D PALPVRESDEFRPFVRRL
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLS-PQVDPEILDLHDGPALPVRESDEFRPFVRRL 120

Query: 121 PEFK-----------------FCAFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVP 150
           PEFK                 F AFDVPVFW ILLFYWVVLFTLTMRRQI HMIKYK+VP
Sbjct: 121 PEFKFWYSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVP 180

[Close]

BLAST of Sed0012921 vs. ExPASy TrEMBL
Match: A0A6J1HHE0 (Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111463557 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.0e-58
Identity = 129/186 (69.35%), Postives = 137/186 (73.66%), Query Frame = 0


Query: 1   MESTAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR------------- 60
           MES AAGVG GAAEDVSSTTLF+RW HA S RYQHLLD+C+P+IF+R             
Sbjct: 1   MESVAAGVGHGAAEDVSSTTLFARWSHAASCRYQHLLDRCSPYIFYRWIACFFIASIYVL 60

Query: 61  -------FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRL 120
                  FY+VSYGLGIYILNLLIGFLS PQVDPEI+DL D PALPVRESDEFRPFVRRL
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLS-PQVDPEILDLHDGPALPVRESDEFRPFVRRL 120

Query: 121 PEFK-----------------FCAFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVP 150
           PEFK                 F AFDVPVFW ILLFYWVVLFTLTMRRQI HMIKYK+VP
Sbjct: 121 PEFKFWYSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKYVP 180

[Close]

BLAST of Sed0012921 vs. ExPASy TrEMBL
Match: A0A6J1BTU8 (Protein RER1 OS=Momordica charantia OX=3673 GN=LOC111005301 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 6.6e-57
Identity = 128/188 (68.09%), Postives = 136/188 (72.34%), Query Frame = 0


Query: 1   MESTAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR------------- 60
           MES AAGVGLGAAED SSTT+ SRW HA+SRRYQHLLD+CTPFIF+R             
Sbjct: 1   MESVAAGVGLGAAEDFSSTTIVSRWSHAVSRRYQHLLDRCTPFIFYRWIACFAIASIYVL 60

Query: 61  -------FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTD--DPALPVRESDEFRPFVR 120
                  FY+VSYGLGIYILNLLIGFLS PQVDPEI DL +   PALP+ ESDEFRPFVR
Sbjct: 61  RVYLIEGFYIVSYGLGIYILNLLIGFLS-PQVDPEIPDLHEGTGPALPISESDEFRPFVR 120

Query: 121 RLPEFK-----------------FCAFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKF 150
           RLPEFK                 F AFDVPVFW ILLFYWVVLFTLTMRRQI HMIKYK+
Sbjct: 121 RLPEFKFWYSITKAFCIAFLMTFFSAFDVPVFWPILLFYWVVLFTLTMRRQISHMIKYKY 180

[Close]

BLAST of Sed0012921 vs. TAIR 10
Match: AT4G39220.1 (Rer1 family protein )

HSP 1 Score: 154.5 bits (389), Expect = 8.8e-38
Identity = 86/160 (53.75%), Postives = 99/160 (61.88%), Query Frame = 0


Query: 27  HAISRRYQHLLDKCTPFIFHR--------------------FYVVSYGLGIYILNLLIGF 86
           H   R YQH LDK TP   +R                    FY+++YGLGIY+LNLLIGF
Sbjct: 20  HEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGF 79

Query: 87  LSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRLPEFK-----------------FCAFD 146
           LS P VDPE   ++D P+LP R SDEF+PF+RRLPEFK                 F  FD
Sbjct: 80  LS-PLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFD 139

Query: 147 VPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVPFSIGKQ 150
           VPVFW ILL YW+VLF LTMRRQI HMIKYK++PFS GKQ
Sbjct: 140 VPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQ 178

[Close]

BLAST of Sed0012921 vs. TAIR 10
Match: AT2G21600.1 (endoplasmatic reticulum retrieval protein 1B )

HSP 1 Score: 151.0 bits (380), Expect = 9.7e-37
Identity = 86/160 (53.75%), Postives = 100/160 (62.50%), Query Frame = 0


Query: 27  HAISRRYQHLLDKCTP--------------------FIFHRFYVVSYGLGIYILNLLIGF 86
           H   R YQ+ LDK TP                    +  H FY++SYGLGIY+LNLLIGF
Sbjct: 20  HEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGF 79

Query: 87  LSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRLPEFK-----------------FCAFD 146
           LS P VDPE ++++D   LP R SDEF+PF+RRLPEFK                 F  FD
Sbjct: 80  LS-PLVDPE-LEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFFSVFD 139

Query: 147 VPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVPFSIGKQ 150
           VPVFW ILL YWVVLF LTMRRQI HMIK+K++PFSIGKQ
Sbjct: 140 VPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQ 177

[Close]

BLAST of Sed0012921 vs. TAIR 10
Match: AT2G23310.1 (Rer1 family protein )

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-36
Identity = 88/184 (47.83%), Postives = 109/184 (59.24%), Query Frame = 0


Query: 3   STAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR--------------- 62
           +TA    L +++  S     +R  HA S+R QHLLDK  P + +R               
Sbjct: 18  ATATDDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRV 77

Query: 63  -----FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRLPE 122
                FY+++Y +GIY+LNL+I FLS PQ DPE   LT   +LP R SDE+RPFVRRLPE
Sbjct: 78  YFVEGFYIITYAIGIYLLNLIIAFLS-PQEDPE-ASLTSGGSLPTRRSDEYRPFVRRLPE 137

Query: 123 FKFC-----------------AFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVPFS 150
           FKF                   FDVPVFW ILLFYWV+LF LTMR+QI HMIKY++VPFS
Sbjct: 138 FKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 197

[Close]

BLAST of Sed0012921 vs. TAIR 10
Match: AT2G23310.2 (Rer1 family protein )

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-36
Identity = 88/184 (47.83%), Postives = 109/184 (59.24%), Query Frame = 0


Query: 3   STAAGVGLGAAEDVSSTTLFSRWRHAISRRYQHLLDKCTPFIFHR--------------- 62
           +TA    L +++  S     +R  HA S+R QHLLDK  P + +R               
Sbjct: 18  ATATDDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRV 77

Query: 63  -----FYVVSYGLGIYILNLLIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRLPE 122
                FY+++Y +GIY+LNL+I FLS PQ DPE   LT   +LP R SDE+RPFVRRLPE
Sbjct: 78  YFVEGFYIITYAIGIYLLNLIIAFLS-PQEDPE-ASLTSGGSLPTRRSDEYRPFVRRLPE 137

Query: 123 FKFC-----------------AFDVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVPFS 150
           FKF                   FDVPVFW ILLFYWV+LF LTMR+QI HMIKY++VPFS
Sbjct: 138 FKFWLSIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 197

[Close]

BLAST of Sed0012921 vs. TAIR 10
Match: AT2G18240.1 (Rer1 family protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-30
Identity = 80/180 (44.44%), Postives = 106/180 (58.89%), Query Frame = 0


Query: 23  SRWRHAISRRYQHLLDKCTPFIFHR--------------------FYVVSYGLGIYILNL 82
           ++WR   S+ +Q+ LD+  P I  R                    ++V+SYGL  YILNL
Sbjct: 20  AKWRIEFSKSFQNYLDRSAPNIVRRWLVTLVAAVIYIYRVYSVYGYFVISYGLATYILNL 79

Query: 83  LIGFLSPPQVDPEIMDLTDDPALPVRESDEFRPFVRRLPEFKF---------CAF----- 142
           LIGFLS P+VDPE ++  D  +LPV ESDE++PFVRRLPEFKF          AF     
Sbjct: 80  LIGFLS-PKVDPE-LEALDPDSLPVDESDEYKPFVRRLPEFKFWYAATKAFVVAFVMTFF 139

Query: 143 ---DVPVFWSILLFYWVVLFTLTMRRQILHMIKYKFVPFSIGKQCQ------NNSITFTR 160
              DVPVFW ILL YW+VL++LTM+R I+HM KY++ PF + K  +      N+ +TF R
Sbjct: 140 SFLDVPVFWPILLCYWLVLYSLTMKRLIVHMFKYRYFPFDVRKPVKLLKFLVNSVLTFLR 197

The following BLAST results are available for this feature:

BLAST of Sed0012921 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544323.1	5.0e-59	69.89	protein RER1A-like [Cucurbita pepo subsp. pepo] >XP_023544324.1 protein RER1A-li...	[more]
XP_022949760.1	5.0e-59	69.35	protein RER1A-like [Cucurbita moschata] >XP_022949761.1 protein RER1A-like [Cucu...	[more]
XP_022977598.1	8.5e-59	69.35	protein RER1A-like [Cucurbita maxima] >XP_022977599.1 protein RER1A-like [Cucurb...	[more]
XP_038880923.1	8.5e-59	70.43	protein RER1A-like [Benincasa hispida] >XP_038880924.1 protein RER1A-like [Benin...	[more]
KAG7034324.1	3.2e-58	68.82	Protein RER1A [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Sed0012921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48670	1.2e-36	53.75	Protein RER1A OS=Arabidopsis thaliana OX=3702 GN=RER1A PE=1 SV=1	[more]
O48671	1.4e-35	53.75	Protein RER1B OS=Arabidopsis thaliana OX=3702 GN=RER1B PE=1 SV=2	[more]
Q9ZWI7	1.8e-35	47.83	Protein RER1C OS=Arabidopsis thaliana OX=3702 GN=RER1C PE=2 SV=1	[more]
Q9ZPV7	2.5e-29	44.44	Protein RER1D OS=Arabidopsis thaliana OX=3702 GN=At2g18240 PE=2 SV=2	[more]
Q5ZHM5	3.6e-28	46.45	Protein RER1 OS=Gallus gallus OX=9031 GN=RER1 PE=2 SV=1	[more]

BLAST of Sed0012921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GCX4	2.4e-59	69.35	Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111453051 PE=3 SV=1	[more]
A0A6J1IRU9	4.1e-59	69.35	Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111477878 PE=3 SV=1	[more]
A0A6J1KTW6	2.0e-58	69.35	Protein RER1 OS=Cucurbita maxima OX=3661 GN=LOC111497178 PE=3 SV=1	[more]
A0A6J1HHE0	2.0e-58	69.35	Protein RER1 OS=Cucurbita moschata OX=3662 GN=LOC111463557 PE=3 SV=1	[more]
A0A6J1BTU8	6.6e-57	68.09	Protein RER1 OS=Momordica charantia OX=3673 GN=LOC111005301 PE=3 SV=1	[more]

BLAST of Sed0012921 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39220.1	8.8e-38	53.75	Rer1 family protein	[more]
AT2G21600.1	9.7e-37	53.75	endoplasmatic reticulum retrieval protein 1B	[more]
AT2G23310.1	1.3e-36	47.83	Rer1 family protein	[more]
AT2G23310.2	1.3e-36	47.83	Rer1 family protein	[more]
AT2G18240.1	1.8e-30	44.44	Rer1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004932	Retrieval of early ER protein Rer1	PFAM	PF03248	Rer1	coord: 106..149 e-value: 6.0E-19 score: 68.4 coord: 44..105 e-value: 4.8E-19 score: 68.7
IPR004932	Retrieval of early ER protein Rer1	PANTHER	PTHR10743	PROTEIN RER1	coord: 105..153
IPR004932	Retrieval of early ER protein Rer1	PANTHER	PTHR10743	PROTEIN RER1	coord: 13..106
None	No IPR available	PANTHER	PTHR10743:SF11	PROTEIN RER1C	coord: 105..153 coord: 13..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012921.1	Sed0012921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051179	localization
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle