Sed0012901 (gene) Chayote v1

Overview


Name	Sed0012901
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Photosystem I reaction center subunit II, chloroplastic
Location	LG12: 5713412 .. 5714029 (+)
RNA-Seq Expression	Sed0012901
Synteny	Sed0012901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGGCCACTCAAGCAACCCTCTTCTCCCCATCTCTCAAAACCCCCAAATCCGCCGCCGCCCCATGGATGAAGCAATCCCCAACTCTCGCCTTCAAAGCCAAGCCCTTGAAGCCGGCCTCCTCTTCCCGCTCGCTCAAAGTCTCCGCCGAGGCCGAGACCGCTGCCGCGGAGGCTCCCGCTGGCTTCTCCCCGCCGGAGCTGGACCCCACCACCCCCTCCCCAATCTTCGCGGGGAGCACCGGGGGGCTCCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGATTCCCCGAAGGAGCAGATCTTCGAGATGCCGACCGGGGGCGCCGCGGTCATGCGACAGGGCCCGAACCTCCTCAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACTAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTCCCCAATGGGGAGGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCTGAGAAGGTCAATCCAGGCAGGCAAGGCGTCGGCCTGAATTTCAGGTCCCTTGGGAAGAATCTCAGCGCCATTGAGGTTAAGTTTACTGGAAAACAAGTCTATGATTTGTAA

mRNA sequence

ATGGCCATGGCCACTCAAGCAACCCTCTTCTCCCCATCTCTCAAAACCCCCAAATCCGCCGCCGCCCCATGGATGAAGCAATCCCCAACTCTCGCCTTCAAAGCCAAGCCCTTGAAGCCGGCCTCCTCTTCCCGCTCGCTCAAAGTCTCCGCCGAGGCCGAGACCGCTGCCGCGGAGGCTCCCGCTGGCTTCTCCCCGCCGGAGCTGGACCCCACCACCCCCTCCCCAATCTTCGCGGGGAGCACCGGGGGGCTCCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGATTCCCCGAAGGAGCAGATCTTCGAGATGCCGACCGGGGGCGCCGCGGTCATGCGACAGGGCCCGAACCTCCTCAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACTAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTCCCCAATGGGGAGGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCTGAGAAGGTCAATCCAGGCAGGCAAGGCGTCGGCCTGAATTTCAGGTCCCTTGGGAAGAATCTCAGCGCCATTGAGGTTAAGTTTACTGGAAAACAAGTCTATGATTTGTAA

Coding sequence (CDS)

ATGGCCATGGCCACTCAAGCAACCCTCTTCTCCCCATCTCTCAAAACCCCCAAATCCGCCGCCGCCCCATGGATGAAGCAATCCCCAACTCTCGCCTTCAAAGCCAAGCCCTTGAAGCCGGCCTCCTCTTCCCGCTCGCTCAAAGTCTCCGCCGAGGCCGAGACCGCTGCCGCGGAGGCTCCCGCTGGCTTCTCCCCGCCGGAGCTGGACCCCACCACCCCCTCCCCAATCTTCGCGGGGAGCACCGGGGGGCTCCTCCGGAAGGCCCAGGTGGAGGAATTCTATGTCATAACATGGGATTCCCCGAAGGAGCAGATCTTCGAGATGCCGACCGGGGGCGCCGCGGTCATGCGACAGGGCCCGAACCTCCTCAAATTGGCGAGGAAGGAGCAGTGTTTGGCTCTGGGGACTAGGCTGAGATCCAAGTACAAGATTAAGTACCAATTTTACAGGGTGTTCCCCAATGGGGAGGTTCAGTATTTGCATCCTAAAGATGGGGTTTATCCTGAGAAGGTCAATCCAGGCAGGCAAGGCGTCGGCCTGAATTTCAGGTCCCTTGGGAAGAATCTCAGCGCCATTGAGGTTAAGTTTACTGGAAAACAAGTCTATGATTTGTAA

Protein sequence

MAMATQATLFSPSLKTPKSAAAPWMKQSPTLAFKAKPLKPASSSRSLKVSAEAETAAAEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAVMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGLNFRSLGKNLSAIEVKFTGKQVYDL

Homology

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BLAST of Sed0012901 vs. NCBI nr
Match: XP_022973649.1 (photosystem I reaction center subunit II, chloroplastic-like [Cucurbita maxima] >XP_022975157.1 photosystem I reaction center subunit II, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 352.8 bits (904), Expect = 2.0e-93
Identity = 184/208 (88.46%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKS--AAAPWMKQSPTLAF-KAKPLKPASSSRSLKVSAEAETAA 60
           MAMA QATLF+PSL TPKS   A PW KQSPTL+F  AKPL  ASSSR +KVSAEAE AA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVPW-KQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAA 60

Query: 61  AEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAVM 120
           AEAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+M
Sbjct: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQ 180
           RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           GVG NFRS+GKN+S IEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Sed0012901 vs. NCBI nr
Match: XP_023539342.1 (photosystem I reaction center subunit II, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.5 bits (898), Expect = 9.7e-93
Identity = 183/207 (88.41%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKS-AAAPWMKQSPTLAF-KAKPLKPASSSRSLKVSAEAETAAA 60
           MAMA QATLF+PSL TPKS A A   KQSPTL+F  AKPL  ASSSR +KVSAEAE AAA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLIKVSAEAEAAAA 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAVMR 120
           EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+MR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+G
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           VG NFRS+GKN+S IEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Sed0012901 vs. NCBI nr
Match: XP_022934493.1 (photosystem I reaction center subunit II, chloroplastic-like [Cucurbita moschata] >KAG7028912.1 Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 183/207 (88.41%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKS-AAAPWMKQSPTLAF-KAKPLKPASSSRSLKVSAEAETAAA 60
           MAMA QATLF+PSL TPKS A A   KQSPTL+F  AKPL  ASSSR +KVSAEAE AAA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAAA 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAVMR 120
           EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+MR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+G
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           VG NFRS+GKN+S IEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Sed0012901 vs. NCBI nr
Match: KAG6597451.1 (Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 183/207 (88.41%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKS-AAAPWMKQSPTLAF-KAKPLKPASSSRSLKVSAEAETAAA 60
           MAMA QATLF+PSL TPKS A A   KQSPTL+F  AKPL  ASSSR +KVSAEAE AAA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRFVKVSAEAEAAAA 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAVMR 120
           EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+MR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+G
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           VG NFRS+GKN+S IEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Sed0012901 vs. NCBI nr
Match: XP_038876164.1 (photosystem I reaction center subunit II, chloroplastic [Benincasa hispida])

HSP 1 Score: 349.4 bits (895), Expect = 2.2e-92
Identity = 185/209 (88.52%), Postives = 195/209 (93.30%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKSAA--APWMKQSPTLAF-KAKP-LKPASSSRSLKVSAEAETA 60
           MAMA QATLF+PSL TPKS A   PW KQSPTL+F  +KP LKPASSSRSLKVSAEAE A
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAITVPW-KQSPTLSFINSKPHLKPASSSRSLKVSAEAE-A 60

Query: 61  AAEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAV 120
           A EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+
Sbjct: 61  AVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 QGVGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           +GVG NFRS+GKN+S IEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

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BLAST of Sed0012901 vs. ExPASy Swiss-Prot
Match: P32869 (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=3659 GN=psaD PE=1 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 1.0e-92
Identity = 181/209 (86.60%), Postives = 193/209 (92.34%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKSA--AAPWMKQSPTLAF-KAKP-LKPASSSRSLKVSAEAETA 60
           MAMATQATLF+PSL TPKS   + PW KQS TL+F  +KP LK ASSSRS KVSAEAET 
Sbjct: 1   MAMATQATLFTPSLSTPKSTGISIPW-KQSSTLSFLTSKPHLKAASSSRSFKVSAEAET- 60

Query: 61  AAEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAV 120
           + EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+
Sbjct: 61  SVEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 QGVGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           +GVG NFRS+GKN+S IEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Sed0012901 vs. ExPASy Swiss-Prot
Match: P12372 (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum OX=4081 GN=psaD PE=2 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.3e-84
Identity = 164/209 (78.47%), Postives = 176/209 (84.21%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKSAAAPWMKQSPTLAFKAKPLK-PASSSRSLKVSAEAETAAAE 60
           MAMATQA+LF+P L  PKS  APW KQS       K LK   S +R ++  AE   AA E
Sbjct: 1   MAMATQASLFTPPLSVPKSTTAPW-KQSLVSFSTPKQLKSTVSVTRPIRAMAEEAPAATE 60

Query: 61  ---APAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAV 120
              APAGF+PP+LDP TPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+
Sbjct: 61  EKPAPAGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MRQGPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 QGVGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           +GVG NFRS+GKN SAIEVKFTGKQVYD+
Sbjct: 181 EGVGQNFRSIGKNKSAIEVKFTGKQVYDI 208

[Close]

BLAST of Sed0012901 vs. ExPASy Swiss-Prot
Match: P29302 (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=psaD PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.4e-81
Identity = 162/207 (78.26%), Postives = 177/207 (85.51%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKSAAAPWMKQSPTLAFKAKPLK-PASSSRSLKVSA-EAETAAA 60
           MAMATQA+LF+P+L  PKS +APW KQS   +F  K LK   S+ R ++  A EA T  A
Sbjct: 1   MAMATQASLFTPALSAPKS-SAPW-KQS-LASFSPKQLKSTVSAPRPIRAMAEEAATKEA 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAVMR 120
           EAP GF+PP+LDP TPSPIF GSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+MR
Sbjct: 61  EAPVGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQG 180
           +G NLLKLARKEQCLALGTRLRSKYKI Y+FYRVFPNGEVQYLHPKDGVYPEKVN GRQG
Sbjct: 121 EGANLLKLARKEQCLALGTRLRSKYKINYRFYRVFPNGEVQYLHPKDGVYPEKVNAGRQG 180

Query: 181 VGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           VG NFRS+GKN S IEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNKSPIEVKFTGKQVYDL 204

[Close]

BLAST of Sed0012901 vs. ExPASy Swiss-Prot
Match: P12353 (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=3562 GN=psaD PE=1 SV=2)

HSP 1 Score: 302.8 bits (774), Expect = 3.0e-81
Identity = 162/215 (75.35%), Postives = 175/215 (81.40%), Query Frame = 0


Query: 1   MAMATQATLFSP----SLKTPKSAAAPWMKQSPTLAFKAKPLKPASSSRSLKVSAEAETA 60
           MAMATQATLFSP    S K   +      KQ   + F +   KPAS   S++ +A AE  
Sbjct: 1   MAMATQATLFSPSSLSSAKPIDTRLTTSFKQPSAVTFAS---KPASRHHSIRAAAAAEGK 60

Query: 61  AA------EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMP 120
           AA      EAP GF+PPELDP TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMP
Sbjct: 61  AAAATETKEAPKGFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMP 120

Query: 121 TGGAAVMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPE 180
           TGGAA+MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFP+GEVQYLHPKDGVYPE
Sbjct: 121 TGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPSGEVQYLHPKDGVYPE 180

Query: 181 KVNPGRQGVGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           KVNPGRQGVGLN RS+GKN+S IEVKFTGKQ YDL
Sbjct: 181 KVNPGRQGVGLNMRSIGKNVSPIEVKFTGKQPYDL 212

[Close]

BLAST of Sed0012901 vs. ExPASy Swiss-Prot
Match: Q9SA56 (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAD2 PE=1 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.5e-75
Identity = 148/204 (72.55%), Postives = 163/204 (79.90%), Query Frame = 0


Query: 3   MATQAT-LFSPSLKTPKSAAAPWMKQSPTLAFKAKPLKPASSSRSLKVSAEAETAAAEAP 62
           MATQA  +FSP++ T  SA       S +   K+      +       S+ A  A  EAP
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAP 60

Query: 63  AGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAVMRQGP 122
            GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+MR+GP
Sbjct: 61  VGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGP 120

Query: 123 NLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGL 182
           NLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR+GVGL
Sbjct: 121 NLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGL 180

Query: 183 NFRSLGKNLSAIEVKFTGKQVYDL 206
           N RS+GKN+S IEVKFTGKQ YDL
Sbjct: 181 NMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of Sed0012901 vs. ExPASy TrEMBL
Match: A0A6J1ICA2 (photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111474178 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 9.5e-94
Identity = 184/208 (88.46%), Postives = 193/208 (92.79%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKS--AAAPWMKQSPTLAF-KAKPLKPASSSRSLKVSAEAETAA 60
           MAMA QATLF+PSL TPKS   A PW KQSPTL+F  AKPL  ASSSR +KVSAEAE AA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVPW-KQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAA 60

Query: 61  AEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAVM 120
           AEAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+M
Sbjct: 61  AEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIM 120

Query: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQ 180
           RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+
Sbjct: 121 RQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRE 180

Query: 181 GVGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           GVG NFRS+GKN+S IEVKFTGKQVYDL
Sbjct: 181 GVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Sed0012901 vs. ExPASy TrEMBL
Match: A0A6J1F7T5 (photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441652 PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.1e-93
Identity = 183/207 (88.41%), Postives = 192/207 (92.75%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKS-AAAPWMKQSPTLAF-KAKPLKPASSSRSLKVSAEAETAAA 60
           MAMA QATLF+PSL TPKS A A   KQSPTL+F  AKPL  ASSSR +KVSAEAE AAA
Sbjct: 1   MAMAAQATLFTPSLTTPKSTATAVSWKQSPTLSFLNAKPLNLASSSRLVKVSAEAEAAAA 60

Query: 61  EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAVMR 120
           EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+MR
Sbjct: 61  EAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMR 120

Query: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQG 180
           QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR+G
Sbjct: 121 QGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGREG 180

Query: 181 VGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           VG NFRS+GKN+S IEVKFTGKQVYDL
Sbjct: 181 VGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Sed0012901 vs. ExPASy TrEMBL
Match: A0A6J1GWF9 (photosystem I reaction center subunit II, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457767 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.0e-92
Identity = 182/209 (87.08%), Postives = 193/209 (92.34%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKSAAA--PWMKQSPTLAF-KAKPL-KPASSSRSLKVSAEAETA 60
           MAMA QATLF+PSL TPKS A   PW KQS TL+F  +KPL KPA+SSR +KVSAEAE A
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPW-KQSSTLSFINSKPLIKPAASSRIVKVSAEAEAA 60

Query: 61  AAEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAV 120
           A EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+
Sbjct: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 QGVGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           +GVG NFRS+GKN+S IEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Sed0012901 vs. ExPASy TrEMBL
Match: A0A6J1INM6 (photosystem I reaction center subunit II, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111479135 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.2e-92
Identity = 182/209 (87.08%), Postives = 192/209 (91.87%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKSAAA--PWMKQSPTLAF-KAKPL-KPASSSRSLKVSAEAETA 60
           MAMA QATLF+PSL TPKS A   PW KQS TL F  +KPL KPA+SSR +KVSAEAE A
Sbjct: 1   MAMAAQATLFTPSLSTPKSTAVTIPW-KQSSTLCFINSKPLIKPAASSRIVKVSAEAEAA 60

Query: 61  AAEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAV 120
           A EAPAGFSPPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+
Sbjct: 61  ATEAPAGFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 QGVGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           +GVG NFRS+GKN+S IEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 208

[Close]

BLAST of Sed0012901 vs. ExPASy TrEMBL
Match: A0A5D3D399 (Photosystem I reaction center subunit II OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00340 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.8e-92
Identity = 184/209 (88.04%), Postives = 196/209 (93.78%), Query Frame = 0


Query: 1   MAMATQATLFSPSLKTPKSAA--APWMKQSPTLAF-KAKP-LKPASSSRSLKVSAEAETA 60
           MAMATQATLF+PSL TPKS+A   PW KQSPTL+F  +KP LK ASSSRSLKVSAEAE A
Sbjct: 1   MAMATQATLFTPSLSTPKSSAISIPW-KQSPTLSFLTSKPHLKTASSSRSLKVSAEAE-A 60

Query: 61  AAEAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAV 120
           A EAPAGF+PPELDP+TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+
Sbjct: 61  AVEAPAGFTPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI 120

Query: 121 MRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180
           MR+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR
Sbjct: 121 MREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGR 180

Query: 181 QGVGLNFRSLGKNLSAIEVKFTGKQVYDL 206
           +GVG NFRS+GKN+S IEVKFTGKQVYDL
Sbjct: 181 EGVGQNFRSIGKNVSPIEVKFTGKQVYDL 207

[Close]

BLAST of Sed0012901 vs. TAIR 10
Match: AT1G03130.1 (photosystem I subunit D-2 )

HSP 1 Score: 283.9 bits (725), Expect = 1.0e-76
Identity = 148/204 (72.55%), Postives = 163/204 (79.90%), Query Frame = 0


Query: 3   MATQAT-LFSPSLKTPKSAAAPWMKQSPTLAFKAKPLKPASSSRSLKVSAEAETAAAEAP 62
           MATQA  +FSP++ T  SA       S +   K+      +       S+ A  A  EAP
Sbjct: 1   MATQAAGIFSPAITTTTSAVKKLHLFSSSHRPKSLSFTKTAIRAEKTESSSAAPAVKEAP 60

Query: 63  AGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPTGGAAVMRQGP 122
            GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPTGGAA+MR+GP
Sbjct: 61  VGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGP 120

Query: 123 NLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRQGVGL 182
           NLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK NPGR+GVGL
Sbjct: 121 NLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEKANPGREGVGL 180

Query: 183 NFRSLGKNLSAIEVKFTGKQVYDL 206
           N RS+GKN+S IEVKFTGKQ YDL
Sbjct: 181 NMRSIGKNVSPIEVKFTGKQSYDL 204

[Close]

BLAST of Sed0012901 vs. TAIR 10
Match: AT4G02770.1 (photosystem I subunit D-1 )

HSP 1 Score: 279.6 bits (714), Expect = 2.0e-75
Identity = 153/214 (71.50%), Postives = 171/214 (79.91%), Query Frame = 0


Query: 3   MATQAT-LFSPSLKTPKSAAAPWMKQSPTLAFKAKPLKPASSS------RSLKVSAEAET 62
           MATQA  +F+ ++ T   AA   +K+   L F +   +P S S      R+ K  + A  
Sbjct: 1   MATQAAGIFNSAITT---AATSGVKK---LHFFSTTHRPKSLSFTKTAIRAEKTDSSAAA 60

Query: 63  AAA----EAPAGFSPPELDPTTPSPIFAGSTGGLLRKAQVEEFYVITWDSPKEQIFEMPT 122
           AAA    EAP GF+PP+LDP TPSPIFAGSTGGLLRKAQVEEFYVITW+SPKEQIFEMPT
Sbjct: 61  AAAPATKEAPVGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPT 120

Query: 123 GGAAVMRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEK 182
           GGAA+MR+GPNLLKLARKEQCLALGTRLRSKYKI YQFYRVFPNGEVQYLHPKDGVYPEK
Sbjct: 121 GGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYRVFPNGEVQYLHPKDGVYPEK 180

Query: 183 VNPGRQGVGLNFRSLGKNLSAIEVKFTGKQVYDL 206
            NPGR+GVGLN RS+GKN+S IEVKFTGKQ YDL
Sbjct: 181 ANPGREGVGLNMRSIGKNVSPIEVKFTGKQSYDL 208

The following BLAST results are available for this feature:

BLAST of Sed0012901 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973649.1	2.0e-93	88.46	photosystem I reaction center subunit II, chloroplastic-like [Cucurbita maxima] ...	[more]
XP_023539342.1	9.7e-93	88.41	photosystem I reaction center subunit II, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022934493.1	1.3e-92	88.41	photosystem I reaction center subunit II, chloroplastic-like [Cucurbita moschata...	[more]
KAG6597451.1	1.3e-92	88.41	Photosystem I reaction center subunit II, chloroplastic, partial [Cucurbita argy...	[more]
XP_038876164.1	2.2e-92	88.52	photosystem I reaction center subunit II, chloroplastic [Benincasa hispida]	[more]

BLAST of Sed0012901 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32869	1.0e-92	86.60	Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus OX=36...	[more]
P12372	2.3e-84	78.47	Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum ...	[more]
P29302	1.4e-81	78.26	Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris ...	[more]
P12353	3.0e-81	75.35	Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9SA56	1.5e-75	72.55	Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of Sed0012901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ICA2	9.5e-94	88.46	photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A6J1F7T5	6.1e-93	88.41	photosystem I reaction center subunit II, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A6J1GWF9	4.0e-92	87.08	photosystem I reaction center subunit II, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A6J1INM6	5.2e-92	87.08	photosystem I reaction center subunit II, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A5D3D399	6.8e-92	88.04	Photosystem I reaction center subunit II OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Sed0012901 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03130.1	1.0e-76	72.55	photosystem I subunit D-2	[more]
AT4G02770.1	2.0e-75	71.50	photosystem I subunit D-1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.1470.10	Photosystem I PsaD, reaction center subunit II	coord: 63..205 e-value: 2.4E-74 score: 249.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
IPR003685	Photosystem I PsaD	PFAM	PF02531	PsaD	coord: 72..203 e-value: 1.0E-65 score: 219.3
IPR003685	Photosystem I PsaD	PANTHER	PTHR31982	PHOTOSYSTEM I REACTION CENTER SUBUNIT II-1, CHLOROPLASTIC-RELATED	coord: 1..205
IPR036579	Photosystem I, reaction centre subunit PsaD superfamily	SUPERFAMILY	64234	Photosystem I subunit PsaD	coord: 70..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012901.1	Sed0012901.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009522	photosystem I