Sed0012739 (gene) Chayote v1

Overview


Name	Sed0012739
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Glycine rich protein
Location	LG04: 42941194 .. 42942439 (-)
RNA-Seq Expression	Sed0012739
Synteny	Sed0012739

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAAAACAAAAAAATCTCTTAAAAATGATTTCGAAGCCTTTAGTTTTTGTGTGTCTTGTTTTGGCCTTTGTTCTTCTCATCTCCTCCGAGGTGGCTGCCAGAGACCTCGCTGAGACCTCCACCAACAACCACAACGGTTAGCTTCCAATAACAATAAAAAATAAAAATTCTTATATTTTGTTTGGTATGCATCAACAAAATTGTTAGTTTTTTTAAAATAAAATTTGTTTGTTCCTCATTTTATGTAATGATTTTGATTATATACTTATACTATCAGTTATTTTTTTTCAGTTATATAATGAGTTTTGTTTCTCTCAAATAGTATATCTTTTTTTATTTATTTTTTGAAAATATAAGTAAAATGGTAGATGAAAAAATGATTGACAGAAATAATATTTGTAAGCTTAATATGATCCTATTTAGTTAACGGCTGCTTGATGGTGTATTAAATCTAATCTTGACCTAAACTATTCTGCCTTTGACATTGCTCTAAACTAGAGATTGTTCTTGTAATGTATTTTTTAGAACTATAATTACAAGCTTCATTTCAAAAACAAAAAATAAAAAGATTCTATAAAAATCTAATATTTTTTACCAGCATCTATTTTTGATAAACTGTTAAATTTTAACTATGATGTAACAGAAGCCACAGTAGAGACAAATGGTGTAGAAGATGCCAAATATGACCGAGGTTATGGAGGCCATCACGGTGGTTACGACCATGGTCATGGCGGCGGCAGATACGGTGGCGGTGGTGGTAGGTACGGTGGTGGTGGCGGTGGCAGGTATGGTGGTGGCGGAAGATACGGTGGCGGTTGCCGATACGGTCGGTGCGGGCACAGGTGCTGCAGCTACGCAGGTGAAGTGGTAGAGGGGGCAAAGCCTTGAGGCTAATATGGATGTGCTGAAATAGTAAAGTATAAAGGTTATGTTGTGTGAGTATGGTTTGTGTGTAAAAGTTCATGAAATAAATGCATGGGGAATGGAGTGGCTAGCTTAGGCTTTTCTTTCTTCTTTTCCCTTTGTTTGGTTTTTAGTGTCTTGCTTTAGATTTGCTTTTGCAAACTTTTATGATATCAAGAAGAAATTTCAGCTTTGTGTGTCATTATACTTCTATCTTCATGAATCCACCTTATTTCAATGCTTAAAATATTTCAAGATGGCTCCATATGGAAAAGATATCTTGGACCAGATTTATGTAAATTTGTGAATTGAAATACATGTTTAAGTTTTACCCGCTTGAA

mRNA sequence

ACAAAAAACAAAAAAATCTCTTAAAAATGATTTCGAAGCCTTTAGTTTTTGTGTGTCTTGTTTTGGCCTTTGTTCTTCTCATCTCCTCCGAGGTGGCTGCCAGAGACCTCGCTGAGACCTCCACCAACAACCACAACGAAGCCACAGTAGAGACAAATGGTGTAGAAGATGCCAAATATGACCGAGGTTATGGAGGCCATCACGGTGGTTACGACCATGGTCATGGCGGCGGCAGATACGGTGGCGGTGGTGGTAGGTACGGTGGTGGTGGCGGTGGCAGGTATGGTGGTGGCGGAAGATACGGTGGCGGTTGCCGATACGGTCGGTGCGGGCACAGGTGCTGCAGCTACGCAGGTGAAGTGGTAGAGGGGGCAAAGCCTTGAGGCTAATATGGATGTGCTGAAATAGTAAAGTATAAAGGTTATGTTGTGTGAGTATGGTTTGTGTGTAAAAGTTCATGAAATAAATGCATGGGGAATGGAGTGGCTAGCTTAGGCTTTTCTTTCTTCTTTTCCCTTTGTTTGGTTTTTAGTGTCTTGCTTTAGATTTGCTTTTGCAAACTTTTATGATATCAAGAAGAAATTTCAGCTTTGTGTGTCATTATACTTCTATCTTCATGAATCCACCTTATTTCAATGCTTAAAATATTTCAAGATGGCTCCATATGGAAAAGATATCTTGGACCAGATTTATGTAAATTTGTGAATTGAAATACATGTTTAAGTTTTACCCGCTTGAA

Coding sequence (CDS)

ATGATTTCGAAGCCTTTAGTTTTTGTGTGTCTTGTTTTGGCCTTTGTTCTTCTCATCTCCTCCGAGGTGGCTGCCAGAGACCTCGCTGAGACCTCCACCAACAACCACAACGAAGCCACAGTAGAGACAAATGGTGTAGAAGATGCCAAATATGACCGAGGTTATGGAGGCCATCACGGTGGTTACGACCATGGTCATGGCGGCGGCAGATACGGTGGCGGTGGTGGTAGGTACGGTGGTGGTGGCGGTGGCAGGTATGGTGGTGGCGGAAGATACGGTGGCGGTTGCCGATACGGTCGGTGCGGGCACAGGTGCTGCAGCTACGCAGGTGAAGTGGTAGAGGGGGCAAAGCCTTGA

Protein sequence

MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAKYDRGYGGHHGGYDHGHGGGRYGGGGGRYGGGGGGRYGGGGRYGGGCRYGRCGHRCCSYAGEVVEGAKP

Homology

[Close]

BLAST of Sed0012739 vs. NCBI nr
Match: KGN43456.1 (hypothetical protein Csa_020456 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 91/124 (73.39%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAK-----YDRGY 60
           M SK  VF+ L+LAFVLL+SSEVAARDLAETS+   NEATVETNGVEDAK     YDRGY
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79

Query: 61  GGHHGGYDHGHGGGRYGGGGGRYGGGGGGRYGGG-GRYGGGCRYGRCGHRCCSYAGEVVE 119
           G   GG+D G+GGGR G G G YGG GG  YGGG G YG GCRYGRCGH+CCSYAGEVVE
Sbjct: 80  G---GGHDRGYGGGRGGYGRGHYGGRGG--YGGGRGGYGRGCRYGRCGHKCCSYAGEVVE 138

[Close]

BLAST of Sed0012739 vs. NCBI nr
Match: NP_001267708.1 (glycine-rich protein-like precursor [Cucumis sativus] >BAF37542.1 cell wall glycine-rich protein [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 91/124 (73.39%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAK-----YDRGY 60
           M SK  VF+ L+LAFVLL+SSEVAARDLAETS+   NEATVETNGVEDAK     YDRGY
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  GGHHGGYDHGHGGGRYGGGGGRYGGGGGGRYGGG-GRYGGGCRYGRCGHRCCSYAGEVVE 119
           G   GG+D G+GGGR G G G YGG GG  YGGG G YG GCRYGRCGH+CCSYAGEVVE
Sbjct: 61  G---GGHDRGYGGGRGGYGRGHYGGRGG--YGGGRGGYGRGCRYGRCGHKCCSYAGEVVE 119

[Close]

BLAST of Sed0012739 vs. NCBI nr
Match: CEG62450.1 (Glycine rich protein [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 2.6e-26
Identity = 91/124 (73.39%), Postives = 97/124 (78.23%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAK-----YDRGY 60
           M SK  VF+ L LAFVLL+SSEVAARDLAETS+   NEATVETNGVEDAK     YDRGY
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  GGHHGGYDHGHGGGRYGGGGGRYGGGGGGRYGGG-GRYGGGCRYGRCGHRCCSYAGEVVE 119
           G   GG+D G+GGGR G G G YGG GG  YGGG G YG GCRYGRCGH+CCSYAGEVVE
Sbjct: 61  G---GGHDRGYGGGRGGYGRGHYGGRGG--YGGGRGGYGRGCRYGRCGHKCCSYAGEVVE 119

[Close]

BLAST of Sed0012739 vs. NCBI nr
Match: KAE8645725.1 (hypothetical protein Csa_020407 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-25
Identity = 92/135 (68.15%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAK-----YDRGY 60
           M SK  VF+ L+LAFVLL+SSEVAARDLAETS+   NE TVETNGVEDAK     YDRGY
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEVTVETNGVEDAKYGRGGYDRGY 79

Query: 61  G-----GHHGGYDHGHGGG---RYGGGGGRYG----GGGGGRYGGGGRYGGGCRYGRCGH 119
           G     G+ GGYD G+GGG    YGGG G YG    GG GG  GG G YG GCRYGRCGH
Sbjct: 80  GGGYDRGYGGGYDRGYGGGYDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGH 139

[Close]

BLAST of Sed0012739 vs. NCBI nr
Match: XP_022952570.1 (cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-24
Identity = 89/121 (73.55%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAK---YDRGYGG 60
           M SK  +F+ L+ A VLLISSEVAARDLAETST   NEAT ETNGVEDAK   YD GYGG
Sbjct: 19  MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 78

Query: 61  HHGGYDHGHGGGRYGGGGGRYGGGGGGRYGGGGRYGGGCRYGRCGHRCCSYAGEVVEGAK 119
             GGY  G  GGR GG GGR G GG G YGGGG YG GCRYGRCG+RCCSYAGEVVEGAK
Sbjct: 79  -RGGYGRGGYGGR-GGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVVEGAK 137

[Close]

BLAST of Sed0012739 vs. ExPASy Swiss-Prot
Match: Q09134 (Abscisic acid and environmental stress-inducible protein OS=Medicago sativa subsp. falcata OX=3878 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.6e-05
Identity = 62/154 (40.26%), Postives = 72/154 (46.75%), Query Frame = 0


Query: 16  VLLISSEVAARDLAETSTNNHNEATVETNGVEDAKYDRGY----------------GGHH 75
           VLLISSEV+ARDL ET+++   E   +TN V DAKY  GY                GG++
Sbjct: 2   VLLISSEVSARDLTETTSDAKKEVVEKTNEVNDAKYGGGYNHGGGGYNGGGYNHGGGGYN 61

Query: 76  --GGYDHG------------HGGGRYGGGGGRYGGGGGGRYGGGGRY------------- 118
             GGY+HG            HGGG Y  GGG Y  GGGG   GGG Y             
Sbjct: 62  NGGGYNHGGGGYNNGGGGYNHGGGGYNNGGGGYNHGGGGYNNGGGGYNHGGGGYNGGGYN 121

[Close]

BLAST of Sed0012739 vs. ExPASy Swiss-Prot
Match: Q07202 (Cold and drought-regulated protein CORA OS=Medicago sativa OX=3879 GN=CORA PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.0e-04
Identity = 57/113 (50.44%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAKYDRGY---GG 60
           M SK  + +  +LA + LISS ++ARDL ETST+   E   +TN V DAKY  GY   GG
Sbjct: 1   MDSKKAILMLSLLA-MALISSVMSARDLTETSTDAKKEVVEKTNEVNDAKYGGGYNHGGG 60

Query: 61  HH-GGYDHG----HGGGRYGGGGGRYGGGGGGRYGGGGR--YGGGCRYGRCGH 104
           ++ GGY+HG    HGGG Y  GGG Y  GGGG  GGGG   +GGG   G  GH
Sbjct: 61  YNGGGYNHGGGYNHGGGGYHNGGGGYNHGGGGYNGGGGHGGHGGGGYNGGGGH 112

[Close]

BLAST of Sed0012739 vs. ExPASy TrEMBL
Match: A0P8W6 (Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=CsGRP1 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.5e-27
Identity = 91/124 (73.39%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAK-----YDRGY 60
           M SK  VF+ L+LAFVLL+SSEVAARDLAETS+   NEATVETNGVEDAK     YDRGY
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  GGHHGGYDHGHGGGRYGGGGGRYGGGGGGRYGGG-GRYGGGCRYGRCGHRCCSYAGEVVE 119
           G   GG+D G+GGGR G G G YGG GG  YGGG G YG GCRYGRCGH+CCSYAGEVVE
Sbjct: 61  G---GGHDRGYGGGRGGYGRGHYGGRGG--YGGGRGGYGRGCRYGRCGHKCCSYAGEVVE 119

[Close]

BLAST of Sed0012739 vs. ExPASy TrEMBL
Match: A0A0A0K6L7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037600 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.5e-27
Identity = 91/124 (73.39%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAK-----YDRGY 60
           M SK  VF+ L+LAFVLL+SSEVAARDLAETS+   NEATVETNGVEDAK     YDRGY
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79

Query: 61  GGHHGGYDHGHGGGRYGGGGGRYGGGGGGRYGGG-GRYGGGCRYGRCGHRCCSYAGEVVE 119
           G   GG+D G+GGGR G G G YGG GG  YGGG G YG GCRYGRCGH+CCSYAGEVVE
Sbjct: 80  G---GGHDRGYGGGRGGYGRGHYGGRGG--YGGGRGGYGRGCRYGRCGHKCCSYAGEVVE 138

[Close]

BLAST of Sed0012739 vs. ExPASy TrEMBL
Match: A0A0A1IXP4 (Glycine rich protein OS=Cucumis sativus OX=3659 GN=GRP PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 91/124 (73.39%), Postives = 97/124 (78.23%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAK-----YDRGY 60
           M SK  VF+ L LAFVLL+SSEVAARDLAETS+   NEATVETNGVEDAK     YDRGY
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  GGHHGGYDHGHGGGRYGGGGGRYGGGGGGRYGGG-GRYGGGCRYGRCGHRCCSYAGEVVE 119
           G   GG+D G+GGGR G G G YGG GG  YGGG G YG GCRYGRCGH+CCSYAGEVVE
Sbjct: 61  G---GGHDRGYGGGRGGYGRGHYGGRGG--YGGGRGGYGRGCRYGRCGHKCCSYAGEVVE 119

[Close]

BLAST of Sed0012739 vs. ExPASy TrEMBL
Match: A0A6J1GM55 (cold and drought-regulated protein CORA-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455223 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.4e-25
Identity = 89/121 (73.55%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAK---YDRGYGG 60
           M SK  +F+ L+ A VLLISSEVAARDLAETST   NEAT ETNGVEDAK   YD GYGG
Sbjct: 19  MSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATAETNGVEDAKYGGYDGGYGG 78

Query: 61  HHGGYDHGHGGGRYGGGGGRYGGGGGGRYGGGGRYGGGCRYGRCGHRCCSYAGEVVEGAK 119
             GGY  G  GGR GG GGR G GG G YGGGG YG GCRYGRCG+RCCSYAGEVVEGAK
Sbjct: 79  -RGGYGRGGYGGR-GGYGGRGGYGGRGGYGGGGGYGRGCRYGRCGYRCCSYAGEVVEGAK 137

[Close]

BLAST of Sed0012739 vs. ExPASy TrEMBL
Match: A0A5D3DE59 (Cold and drought-regulated protein CORA-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00050 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 9.2e-25
Identity = 88/125 (70.40%), Postives = 94/125 (75.20%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAKYDRGYGGHHG 60
           M SK  VF+ L+LAFVLL+SSEVAARDLAETS+   NEATVETNGVEDAKY        G
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYG-------G 60

Query: 61  GYDHGHGGGRYGGGG------GRYGGGGGGRYGGG-GRYGGGCRYGRCGHRCCSYAGEVV 119
           GYD G+GGG YG GG      GR G GG G YGGG G YG GCRYGRCG+RCCSYAGEVV
Sbjct: 61  GYDRGYGGGGYGRGGYGRGGYGRGGYGGRGGYGGGRGGYGRGCRYGRCGYRCCSYAGEVV 118

[Close]

BLAST of Sed0012739 vs. TAIR 10
Match: AT2G05520.3 (glycine-rich protein 3 )

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 65/132 (49.24%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAKYD-RGYGGHH 60
           M SK LV   L L  VLL+ SEVAA           + ATV +   E  K D RGYG + 
Sbjct: 1   MASKALVL--LGLFAVLLVVSEVAAA----------SSATVNSESKETVKPDQRGYGDNG 60

Query: 61  GGYDHG-----HGGGRYGGGGGRYGGGGGGRYGGGGRYGGG------CRYGRC--GH--- 115
           G Y++G      GGGRY GGGGRY GGGG   GGGGR GGG      CR+G C  G+   
Sbjct: 61  GNYNNGGGNYQGGGGRYQGGGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHGCCYRGYNGC 120

[Close]

BLAST of Sed0012739 vs. TAIR 10
Match: AT2G05520.5 (glycine-rich protein 3 )

HSP 1 Score: 49.3 bits (116), Expect = 2.5e-06
Identity = 62/121 (51.24%), Postives = 71/121 (58.68%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAKYD-RGYGGHH 60
           M SK LV   L L  VLL+ SEVAA           + ATV +   E  K D RGYG + 
Sbjct: 1   MASKALVL--LGLFAVLLVVSEVAAA----------SSATVNSESKETVKPDQRGYGDNG 60

Query: 61  GGYDHGHGGGRYGGGGGRYGGGGGGRYGGGGRYGGGCRYGRC--GH----RCCSYAGEVV 115
           G Y+  +GGGRY GGGGRY  GGGGR GGGG  G  CR+G C  G+    RCCSYAGE V
Sbjct: 61  GNYN--NGGGRYQGGGGRY-QGGGGRQGGGGSGGSYCRHGCCYRGYNGCSRCCSYAGEAV 106

[Close]

BLAST of Sed0012739 vs. TAIR 10
Match: AT2G05520.4 (glycine-rich protein 3 )

HSP 1 Score: 48.5 bits (114), Expect = 4.2e-06
Identity = 64/131 (48.85%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAKYD-RGYGGHH 60
           M SK LV   L L  VLL+ SEVAA           + ATV +   E  K D RGYG + 
Sbjct: 1   MASKALVL--LGLFAVLLVVSEVAAA----------SSATVNSESKETVKPDQRGYGDNG 60

Query: 61  GGYDHG----HGGGRYGGGGGRYGGGGGGRYGGGGRYGGG------CRYGRC--GH---- 115
           G Y++G     GGG Y GGGGRY GGGG   GGGGR GGG      CR+G C  G+    
Sbjct: 61  GNYNNGGGYQGGGGNYQGGGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHGCCYRGYNGCS 119

[Close]

BLAST of Sed0012739 vs. TAIR 10
Match: AT2G05520.6 (glycine-rich protein 3 )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 62/125 (49.60%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVEDAKYD-RGYGGHH 60
           M SK LV   L L  VLL+ SEVAA           + ATV +   E  K D RGYG + 
Sbjct: 1   MASKALVL--LGLFAVLLVVSEVAAA----------SSATVNSESKETVKPDQRGYGDNG 60

Query: 61  GGYDHG----HGGGRYGGGGGRYGGGGGGRYGGGGRYGGGCRYGRC--GH----RCCSYA 115
           G Y++G     GGG Y GGGGRY  GGGGR GGGG  G  CR+G C  G+    RCCSYA
Sbjct: 61  GNYNNGGGYQGGGGNYQGGGGRY-QGGGGRQGGGGSGGSYCRHGCCYRGYNGCSRCCSYA 112

[Close]

BLAST of Sed0012739 vs. TAIR 10
Match: AT2G05520.2 (glycine-rich protein 3 )

HSP 1 Score: 44.3 bits (103), Expect = 8.0e-05
Identity = 62/135 (45.93%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 1   MISKPLVFVCLVLAFVLLISSEVAARDLAETSTNNHNEATVETNGVED--AKYDRGYGGH 60
           M SK LV   L L  VLL+ SEVAA   A  ++ +      +  G  D    Y+ G G  
Sbjct: 1   MASKALVL--LGLFAVLLVVSEVAAASSATVNSESKETVKPDQRGYGDNGGNYNNGGGYQ 60

Query: 61  HGGYDHGHGGGRYGGGGGRYGG------GGGGRY-GGGGRYGGG------CRYGRC--GH 115
            GG ++  GGG Y GGGGRY G      GGGGRY GGGGR GGG      CR+G C  G+
Sbjct: 61  GGGGNYQGGGGNYQGGGGRYQGGGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHGCCYRGY 120

The following BLAST results are available for this feature:

BLAST of Sed0012739 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43456.1	1.6e-26	73.39	hypothetical protein Csa_020456 [Cucumis sativus]	[more]
NP_001267708.1	1.6e-26	73.39	glycine-rich protein-like precursor [Cucumis sativus] >BAF37542.1 cell wall glyc...	[more]
CEG62450.1	2.6e-26	73.39	Glycine rich protein [Cucumis sativus]	[more]
KAE8645725.1	2.9e-25	68.15	hypothetical protein Csa_020407 [Cucumis sativus]	[more]
XP_022952570.1	1.1e-24	73.55	cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Sed0012739 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09134	1.6e-05	40.26	Abscisic acid and environmental stress-inducible protein OS=Medicago sativa subs...	[more]
Q07202	5.0e-04	50.44	Cold and drought-regulated protein CORA OS=Medicago sativa OX=3879 GN=CORA PE=2 ...	[more]

BLAST of Sed0012739 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0P8W6	7.5e-27	73.39	Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=CsGRP1 PE=2 SV=1	[more]
A0A0A0K6L7	7.5e-27	73.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037600 PE=4 SV=1	[more]
A0A0A1IXP4	1.3e-26	73.39	Glycine rich protein OS=Cucumis sativus OX=3659 GN=GRP PE=2 SV=1	[more]
A0A6J1GM55	5.4e-25	73.55	cold and drought-regulated protein CORA-like isoform X1 OS=Cucurbita moschata OX...	[more]
A0A5D3DE59	9.2e-25	70.40	Cold and drought-regulated protein CORA-like OS=Cucumis melo var. makuwa OX=1194...	[more]

BLAST of Sed0012739 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G05520.3	1.5e-06	49.24	glycine-rich protein 3	[more]
AT2G05520.5	2.5e-06	51.24	glycine-rich protein 3	[more]
AT2G05520.4	4.2e-06	48.85	glycine-rich protein 3	[more]
AT2G05520.6	1.6e-05	49.60	glycine-rich protein 3	[more]
AT2G05520.2	8.0e-05	45.93	glycine-rich protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..95 e-value: 4.7E-15 score: 56.0
IPR010800	Glycine rich protein	PANTHER	PTHR37389	FAMILY NOT NAMED	coord: 1..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..50
None	No IPR available	PANTHER	PTHR37389:SF9	GLYCINE-RICH PROTEIN	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012739.1	Sed0012739.1	mRNA