Sed0012586 (gene) Chayote v1

Overview


Name	Sed0012586
Type	gene
Organism	Sechium edule (Chayote v1)
Description	lysine-rich arabinogalactan protein 18-like
Location	LG10: 4760457 .. 4762267 (-)
RNA-Seq Expression	Sed0012586
Synteny	Sed0012586

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGACAATTTGCGATCGCACTCATTTTAATCGTCGCCGTCGTCGGTGGCAAGTCTCCGACTGCTACTCCAGTGGCTAAGTCTCCAACTCCTGCCTCATCTCCTGTAGTGCCATCGCCAAATTCATCTCCGCCGCCTACATCCCCACCATTAGCCTCTTCGCCGGTCAGGATTCCTTCGAATCTGTCCGTTCCGGCGGCTCGCCGCCAGCTACAACACGAGTGAGCTCTCCGCCGGTTCCAGCTCCGGCTAGTTCTCCACCAGTTCCAGTACTGGAGATCTCTCCTCTCGCTCTGATGCCAACAACCGCCCCCGAAAGTTCTCCGGTGGAATCGCCTCCGGTTGAGGTCCCGTCGCCAGTGCCGAGCAAGAAGAAATCAAAGAAGCATGAAGCACTAGCTCCATCGCCGACGTTTCTCGACCCACCGGCGCGACCTTCTAGCGAAGAAGGTCCTGCGCCACGTCCGTCACTGGATGATAAGGTAATCAATTTTAAATCCTAAATCTCCGCCATTACAGTCTAAACATTTACCTCCATTGTCAATCTGCTCAAGATCCGAAACATTGATCACATAATACGCCCTTAACAATGTCCGGAATCAGAATTTTACTTTGATTTTGATAGAAATGGCGCATAATTAATTTCCTTGTTTGAGTCATGGCAATGGCCGAATTTGCACCGGTTGAATCTAAGGACTTGAAATATGTTTCTCTCAAACCAGTAATCTCAAATAAACATGCCTTAAGTCTGGAAAACGCTTAAACTAGAATGTCATTTGAAATATCCTGACAGTATATTAGGCTGTTTTTTGACATATTTAGGTAGGTTTTGGGTTAAAGAGTTATATTGAGTAATTAAAAATTGAGAATTGTGTCAAAAACTCGTTTGGATGTAGTTTTTGTGCAGAGGAATTAGAGTCAAAACCTTGTTTTAAATGTAGAGTTAAAGATAAGTATTATTTTTAGTAGTTAAAAAAGAAATGATTAAAAATGAATTGTTAAAAATGAGTTATTTTGATTAATTTGAAAGGAATGATTAAAATAAGTTGTTAGAAATGATGGAATAGTTTTAAATGAATGATTAAAAATGAATGGTTAGAAATTAGAATTATTTTTAAAAATAAAAATGAGGAAAAATTAATAAAAACTTGAATTTTGGTTTTCGTGGAAGAGTTGATAATTCATAATACTAATTCCGACCTAAATATGTCAAACAAACACCCCTGGGACAGGGAATCTGATTTTCCGATTTAAAAAAAAAAGGCCGAATTTGCACTTGTTTGGAAGCGGAGTGACTGAGCTAACACGCGCCGCCGACCTGCGCGGATGTGTCGCGTAAGAGGGATTGAGTTGAGTTTTTACCATGGTTGAGTCTAAAATTAACCCAGGGTAAAGGAAGAGAACAAAACGCGTCAATAAAAGGAATCATAATTGGTCAGATCACACTACGCTCGAGAGCAGTCAATTTTAATCCAGGTTGGTTTTTTTTCAGATCACGGTGAGCCAAACACAGTAAAAAAAAAAAAGAAAGAAGAAATTAGACTTATATTTTAGAATTTCCCAAAGTTTAAATTCCGTTACTATGTTTTCATAAAATCTGAATTTTAATTTTTGTTGAAACCCATTACTGATTTCTTTTTTCTTAATCAATTTGATATTCTAATATTGAAAAATGCCATGAATCTGTCTCTTTGTTATTGTTGATGCAGAGTGGAGATGAAGCATTGAGGAACATGCAGACGGTGGCCGGAAGCTTGGGTCTCGGATTGGCCGCCGCCGCCGCTGCCGCCGTCAGTTTCATGTTCTAG

mRNA sequence

ATGGGAAGACAATTTGCGATCGCACTCATTTTAATCGTCGCCGTCGTCGGTGGCAAGTCTCCGACTGCTACTCCAGTGGCTAAGTCTCCAACTCCTGCCTCATCTCCTGTAGTGCCATCGCCAAATTCATCTCCGCCGCCTACATCCCCACCATTAGCCTCTTCGCCGGATTCCTTCGAATCTGTCCGTTCCGGCGGCTCGCCGCCAGCTACAACACGAGTGAGCTCTCCGCCGGTTCCAGCTCCGGCTAGTTCTCCACCAGTTCCAGTACTGGAGATCTCTCCTCTCGCTCTGATGCCAACAACCGCCCCCGAAAGTTCTCCGGTGGAATCGCCTCCGGTTGAGGTCCCGTCGCCAGTGCCGAGCAAGAAGAAATCAAAGAAGCATGAAGCACTAGCTCCATCGCCGACGTTTCTCGACCCACCGGCGCGACCTTCTAGCGAAGAAGGTCCTGCGCCACGTCCGTCACTGGATGATAAGAGTGGAGATGAAGCATTGAGGAACATGCAGACGGTGGCCGGAAGCTTGGGTCTCGGATTGGCCGCCGCCGCCGCTGCCGCCGTCAGTTTCATGTTCTAG

Coding sequence (CDS)

ATGGGAAGACAATTTGCGATCGCACTCATTTTAATCGTCGCCGTCGTCGGTGGCAAGTCTCCGACTGCTACTCCAGTGGCTAAGTCTCCAACTCCTGCCTCATCTCCTGTAGTGCCATCGCCAAATTCATCTCCGCCGCCTACATCCCCACCATTAGCCTCTTCGCCGGATTCCTTCGAATCTGTCCGTTCCGGCGGCTCGCCGCCAGCTACAACACGAGTGAGCTCTCCGCCGGTTCCAGCTCCGGCTAGTTCTCCACCAGTTCCAGTACTGGAGATCTCTCCTCTCGCTCTGATGCCAACAACCGCCCCCGAAAGTTCTCCGGTGGAATCGCCTCCGGTTGAGGTCCCGTCGCCAGTGCCGAGCAAGAAGAAATCAAAGAAGCATGAAGCACTAGCTCCATCGCCGACGTTTCTCGACCCACCGGCGCGACCTTCTAGCGAAGAAGGTCCTGCGCCACGTCCGTCACTGGATGATAAGAGTGGAGATGAAGCATTGAGGAACATGCAGACGGTGGCCGGAAGCTTGGGTCTCGGATTGGCCGCCGCCGCCGCTGCCGCCGTCAGTTTCATGTTCTAG

Protein sequence

MGRQFAIALILIVAVVGGKSPTATPVAKSPTPASSPVVPSPNSSPPPTSPPLASSPDSFESVRSGGSPPATTRVSSPPVPAPASSPPVPVLEISPLALMPTTAPESSPVESPPVEVPSPVPSKKKSKKHEALAPSPTFLDPPARPSSEEGPAPRPSLDDKSGDEALRNMQTVAGSLGLGLAAAAAAAVSFMF

Homology

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BLAST of Sed0012586 vs. NCBI nr
Match: XP_022963306.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita moschata])

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-33
Identity = 128/244 (52.46%), Postives = 139/244 (56.97%), Query Frame = 0


Query: 1   MGRQFAIALILIVAV---VGGKSPTATP----------VAKSPTPASSPVVPSPNS---- 60
           MGRQ  IAL+LI AV   VGG+SP A P           AK+P PA+SPVVP  NS    
Sbjct: 1   MGRQSVIALVLICAVVAGVGGQSPAAAPTTTPATPAPVAAKNPPPAASPVVPPTNSSPAA 60

Query: 61  ---------------------SPPPTSPPLASSPDSFESVRS--GGSPPATTRVSSPPVP 120
                                SPP ++PP AS P S     S    SPPAT   SSPPVP
Sbjct: 61  APQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSPPAASVPASSPPATVPASSPPVP 120

Query: 121 APASSPPVPVLEISPLALMPTTAPES------SPVESPPVEVPSPVPSKKKSKKHEALAP 180
            PASSPPVPV E SP    P  +P +      +PV SPP EVPSP PSKKKSKKH+A AP
Sbjct: 121 VPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASPPAEVPSPAPSKKKSKKHKAPAP 180

Query: 181 SPTFLDPPARPS-----SEEGPAPRPSLDDKSGDEAL-RNMQTVAGSLGLGLAAAAAAAV 193
           SP  L PPA PS     SEEGP P PSLDDKSG EAL RNMQ V GSL LG    +AA  
Sbjct: 181 SPALLGPPAPPSEAPGGSEEGPTPAPSLDDKSGAEALRRNMQKVVGSLALGF---SAAVF 240

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BLAST of Sed0012586 vs. NCBI nr
Match: KAG6595001.1 (hypothetical protein SDJN03_11554, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153.3 bits (386), Expect = 2.1e-33
Identity = 127/244 (52.05%), Postives = 140/244 (57.38%), Query Frame = 0


Query: 1   MGRQFAIALILIVAV---VGGKSPTATP----------VAKSPTPASSPVVPSPNS---- 60
           MGRQ  IAL++I AV   VGG+SP A P           AK P+PA+SPVVP  NS    
Sbjct: 1   MGRQSVIALVMICAVVAGVGGQSPAAAPTTTPATPAPVAAKYPSPAASPVVPPTNSSPAA 60

Query: 61  ---------------------SPPPTSPPLASSPDSFESVRS--GGSPPATTRVSSPPVP 120
                                SPP ++PP AS P S     S    SPPAT   SSPPVP
Sbjct: 61  APQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSPPAASVPASSPPATVPASSPPVP 120

Query: 121 APASSPPVPVLEISPLALMPTTAPES------SPVESPPVEVPSPVPSKKKSKKHEALAP 180
            PASSPPVPV E SP    P  +P +      +PV SPP EVPSP PSKKKSKKH+A AP
Sbjct: 121 VPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASPPAEVPSPAPSKKKSKKHKAPAP 180

Query: 181 SPTFLDPPARPS-----SEEGPAPRPSLDDKSGDEAL-RNMQTVAGSLGLGLAAAAAAAV 193
           SP  L PPA PS     SEEGP+P PSLDDKSG EAL RNMQ V GSL LG    +AA  
Sbjct: 181 SPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALRRNMQKVVGSLALGF---SAAVF 240

[Close]

BLAST of Sed0012586 vs. NCBI nr
Match: XP_023517454.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 2.1e-33
Identity = 128/244 (52.46%), Postives = 139/244 (56.97%), Query Frame = 0


Query: 1   MGRQFAIALILIVAV---VGGKSPTATP----------VAKSPTPASSPVVPSPNS---- 60
           MGRQ  IAL+LI AV   VGG+SP A P           AK P PA+SPVVP  NS    
Sbjct: 1   MGRQSVIALVLICAVVAGVGGQSPAAAPTTTPATPAPVAAKYPPPAASPVVPPTNSSPAA 60

Query: 61  ---------------------SPPPTSPPLASSPDSFESVRS--GGSPPATTRVSSPPVP 120
                                SPP ++PP AS P S     S    SPPAT   SSPPVP
Sbjct: 61  APQKPVTPAPVSTPPVVAPVASPPASTPPTASVPASSPPAASVPASSPPATVPASSPPVP 120

Query: 121 APASSPPVPVLEISPLALMPTTAPES------SPVESPPVEVPSPVPSKKKSKKHEALAP 180
            PASSPPVPV E SP    P  +P +      +PV SPP EVPSP PSKKKSKKH+A AP
Sbjct: 121 VPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASPPAEVPSPAPSKKKSKKHKAPAP 180

Query: 181 SPTFLDPPARPS-----SEEGPAPRPSLDDKSGDEALR-NMQTVAGSLGLGLAAAAAAAV 193
           SP  L PPA PS     SEEGP+P PSLDDKSG EALR NMQ V GSL LG    +AA  
Sbjct: 181 SPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALRKNMQKVVGSLALGF---SAAVF 240

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BLAST of Sed0012586 vs. NCBI nr
Match: XP_023003133.1 (lysine-rich arabinogalactan protein 18-like [Cucurbita maxima])

HSP 1 Score: 151.4 bits (381), Expect = 8.1e-33
Identity = 134/254 (52.76%), Postives = 141/254 (55.51%), Query Frame = 0


Query: 1   MGRQFAIALILIVAV---VGGKSPTATP----------VAKSPTPASSPVVPSPNSSP-- 60
           MGRQ  IAL+LI AV   VGG+SP A P           AK P PA+SPVVP  NSSP  
Sbjct: 1   MGRQSVIALVLICAVVAGVGGQSPAAAPTTTPATPAPVAAKYPPPAASPVVPPTNSSPAA 60

Query: 61  ---------------------------PPT------SPPLASSPDSFESVRS--GGSPPA 120
                                      PPT      SPP AS P S     S    SPPA
Sbjct: 61  APQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSPPAASVPASSPPAASVPASSPPA 120

Query: 121 TTRVSSPPVPAPASSPPVPVLEISPLALMP---TTAPES---SPVESPPVEVPSPVPSKK 180
           T   SSPPVP PASSPPVPV E SP    P     APES   +PV SPP EVPSP PSKK
Sbjct: 121 TVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPESAPPAPVASPPAEVPSPAPSKK 180

Query: 181 KSKKHEALAPSPTFLDPPARPS-----SEEGPAPRPSLDDKSGDEAL-RNMQTVAGSLGL 193
           KSKKH+A APSP  L PPA PS     SEEGP+P PSLDDKSG EAL RNMQ V GSL L
Sbjct: 181 KSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALRRNMQKVVGSLAL 240

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BLAST of Sed0012586 vs. NCBI nr
Match: XP_038883640.1 (lysine-rich arabinogalactan protein 18 [Benincasa hispida])

HSP 1 Score: 139.8 bits (351), Expect = 2.4e-29
Identity = 121/248 (48.79%), Postives = 134/248 (54.03%), Query Frame = 0


Query: 1   MGRQFAIALILIVAVVGG------------------------------------------ 60
           MGRQ  IAL+LI AVV G                                          
Sbjct: 1   MGRQSVIALVLICAVVAGVGGSLQLQLRLPLGRHPACSSQVSTSSRISCISTDKLISRRR 60

Query: 61  KSPTATPVAKSPTPASSPVVPSPNSSPPPTSPPLASSPDS---FESVRSGGSPPATTRVS 120
            S  ATP   S  PAS+P   +P +SPP ++PP AS P S     SV     P AT   S
Sbjct: 61  SSKPATPAPVSTPPASAPPAVAPVASPPASTPPTASVPASSPPAASVPPSSPPAATVPAS 120

Query: 121 SPPVPAPASSPPVPVLEISPLALMPT---TAPESS---PVESPPVEVPSPVPSKKKSKKH 180
           SPPVP P SSPPVPV   SP    PT    APESS   PV SPPVEVP+P PSKKKSKKH
Sbjct: 121 SPPVPVPVSSPPVPVPVSSPPVPTPTQSPPAPESSPPAPVASPPVEVPAPAPSKKKSKKH 180

Query: 181 EALAPSPTFLDPPARPS-----SEEGPAPRPSLDDKSGDEALRNMQTVAGSLGLGLAAAA 193
           +A APSP  L PPA PS     SEEGP+P PSL+DKSG EALRN+Q VAGSL +G    A
Sbjct: 181 KAPAPSPALLGPPAPPSEAPGGSEEGPSPSPSLEDKSGAEALRNLQKVAGSLAVGW---A 240

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BLAST of Sed0012586 vs. ExPASy Swiss-Prot
Match: Q9FPR2 (Lysine-rich arabinogalactan protein 18 OS=Arabidopsis thaliana OX=3702 GN=AGP18 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.9e-15
Identity = 90/219 (41.10%), Postives = 116/219 (52.97%), Query Frame = 0


Query: 1   MGRQFAIALILI---VAVVGGKSPTATPVAKSPT--------PASSPVVPSPNSSPPPTS 60
           M R F + + LI   VA VGG+SP ++P  KSPT        P  SP V SP ++P  T 
Sbjct: 1   MDRNFLLTVTLICIVVAGVGGQSPISSP-TKSPTTPSAPTTSPTKSPAVTSPTTAPAKTP 60

Query: 61  PPLASSPDSFESVRSGGSPPATTRVSSPPVPAPASSPPVPV-LEISPLALMPTTAPES-- 120
              ASSP     V S  SP   +  S PP P P SSPPVP  +  SP++  P  AP +  
Sbjct: 61  TASASSP-----VESPKSPAPVSESSPPPTPVPESSPPVPAPMVSSPVSSPPVPAPVADS 120

Query: 121 --SPVESPPVEVPSPVPSK-----KKSKKHEAL-APSPTFLDPPARPSSEEGP-----AP 180
             +PV +P  +VP+P PSK     KKSKKH+A  AP+P  L PPA P+   GP     +P
Sbjct: 121 PPAPVAAPVADVPAPAPSKHKKTTKKSKKHQAAPAPAPELLGPPAPPTESPGPNSDAFSP 180

Query: 181 RPSLDDKSGDEALRNMQTVAGSLGLGLAAAAAAAVSFMF 193
            PS DD+SG  + R ++ VA    +G  A A A +   F
Sbjct: 181 GPSADDQSGAASTRVLRNVA----VGAVATAWAVLVMAF 209

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BLAST of Sed0012586 vs. ExPASy Swiss-Prot
Match: Q9C5S0 (Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-09
Identity = 67/172 (38.95%), Postives = 89/172 (51.74%), Query Frame = 0


Query: 1   MGRQFAIALILIVAVVG--GKSPTATPVAKSPTPASSPVVPSPNSSPPPTS--PPLASSP 60
           M R FAIA+I IV + G  G++PT+ P A +P P  +P  P P ++PPP S  PP+ +SP
Sbjct: 1   MARSFAIAVICIVLIAGVTGQAPTSPPTA-TPAP-PTPTTPPPAATPPPVSAPPPVTTSP 60

Query: 61  DSFESVRSGGSPPATTRVSSPP-------VPAPASSPPVPVLEISPLALMPTTAPESSPV 120
               +     +PP    VSSPP        P P +SPP PV    P    P   P  +P+
Sbjct: 61  PPVTTAPPPANPPPP--VSSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPL 120

Query: 121 ESPPVEVPSPVPSKKKSKKHEALAPSPTFLDPPARPSSEEGPAPRPSLDDKS 162
            SPP +VP+P P+ K        +PSP+    P  PSS+   AP PS D  S
Sbjct: 121 ASPPAQVPAPAPTTKPD------SPSPSPSSSPPLPSSD---APGPSTDSIS 159

[Close]

BLAST of Sed0012586 vs. ExPASy TrEMBL
Match: A0A6J1HFT1 (lysine-rich arabinogalactan protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC111463555 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 6.0e-34
Identity = 128/244 (52.46%), Postives = 139/244 (56.97%), Query Frame = 0


Query: 1   MGRQFAIALILIVAV---VGGKSPTATP----------VAKSPTPASSPVVPSPNS---- 60
           MGRQ  IAL+LI AV   VGG+SP A P           AK+P PA+SPVVP  NS    
Sbjct: 1   MGRQSVIALVLICAVVAGVGGQSPAAAPTTTPATPAPVAAKNPPPAASPVVPPTNSSPAA 60

Query: 61  ---------------------SPPPTSPPLASSPDSFESVRS--GGSPPATTRVSSPPVP 120
                                SPP ++PP AS P S     S    SPPAT   SSPPVP
Sbjct: 61  APQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSPPAASVPASSPPATVPASSPPVP 120

Query: 121 APASSPPVPVLEISPLALMPTTAPES------SPVESPPVEVPSPVPSKKKSKKHEALAP 180
            PASSPPVPV E SP    P  +P +      +PV SPP EVPSP PSKKKSKKH+A AP
Sbjct: 121 VPASSPPVPVPESSPPVPTPIESPPAPETAPPAPVASPPAEVPSPAPSKKKSKKHKAPAP 180

Query: 181 SPTFLDPPARPS-----SEEGPAPRPSLDDKSGDEAL-RNMQTVAGSLGLGLAAAAAAAV 193
           SP  L PPA PS     SEEGP P PSLDDKSG EAL RNMQ V GSL LG    +AA  
Sbjct: 181 SPALLGPPAPPSEAPGGSEEGPTPAPSLDDKSGAEALRRNMQKVVGSLALGF---SAAVF 240

[Close]

BLAST of Sed0012586 vs. ExPASy TrEMBL
Match: A0A6J1KVL2 (lysine-rich arabinogalactan protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111496835 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.9e-33
Identity = 134/254 (52.76%), Postives = 141/254 (55.51%), Query Frame = 0


Query: 1   MGRQFAIALILIVAV---VGGKSPTATP----------VAKSPTPASSPVVPSPNSSP-- 60
           MGRQ  IAL+LI AV   VGG+SP A P           AK P PA+SPVVP  NSSP  
Sbjct: 1   MGRQSVIALVLICAVVAGVGGQSPAAAPTTTPATPAPVAAKYPPPAASPVVPPTNSSPAA 60

Query: 61  ---------------------------PPT------SPPLASSPDSFESVRS--GGSPPA 120
                                      PPT      SPP AS P S     S    SPPA
Sbjct: 61  APQKPVTPAPVSTPPAVAPVASPPASTPPTASVPASSPPAASVPASSPPAASVPASSPPA 120

Query: 121 TTRVSSPPVPAPASSPPVPVLEISPLALMP---TTAPES---SPVESPPVEVPSPVPSKK 180
           T   SSPPVP PASSPPVPV E SP    P     APES   +PV SPP EVPSP PSKK
Sbjct: 121 TVPASSPPVPVPASSPPVPVPESSPPVPTPIESPPAPESAPPAPVASPPAEVPSPAPSKK 180

Query: 181 KSKKHEALAPSPTFLDPPARPS-----SEEGPAPRPSLDDKSGDEAL-RNMQTVAGSLGL 193
           KSKKH+A APSP  L PPA PS     SEEGP+P PSLDDKSG EAL RNMQ V GSL L
Sbjct: 181 KSKKHKAPAPSPALLGPPAPPSEAPGGSEEGPSPAPSLDDKSGAEALRRNMQKVVGSLAL 240

[Close]

BLAST of Sed0012586 vs. ExPASy TrEMBL
Match: A0A1S3B0X7 (lysine-rich arabinogalactan protein 18-like OS=Cucumis melo OX=3656 GN=LOC103484821 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.1e-26
Identity = 121/245 (49.39%), Postives = 131/245 (53.47%), Query Frame = 0


Query: 1   MGRQFAIALILI---VAVVGGKSPTATP----------VAKSPTPASSPVVPSPNS---- 60
           MGRQ  IAL+LI   VAVVGG+SP A P           AK P PA+SPV P  NS    
Sbjct: 1   MGRQSVIALVLICAVVAVVGGQSPAAAPTTTPAATPPVAAKYPPPAASPVSPPTNSSPAA 60

Query: 61  --------------------------SPPPTSPPLASSPDS---FESVRSGGSPPATTRV 120
                                     SPP ++PP AS P S     SV     P AT   
Sbjct: 61  APQKPATPAPVSTPPASAPPAVAPVASPPASTPPTASVPASSPPAASVPPSSPPAATVPA 120

Query: 121 SSPPVPAPASSPPVPVLEISPLALMPT---TAPESS---PVESPPVEVPSPVPSKKKSKK 180
           SSPPVP P SSPPVPV   SP    PT    APESS   PV SPP EVP+P PS KKSKK
Sbjct: 121 SSPPVPVPVSSPPVPVPVSSPPVPTPTESPPAPESSPPAPVASPPAEVPAPAPS-KKSKK 180

Query: 181 HEALAPSPTFLDPPARPS-----SEEGPAPRPSLDDKSGDEALRNMQTVAGSLGLGLAAA 189
           H A APSP  L PPA PS     SEEGP+P PSL+DKSG EAL     VAGSL LG AA 
Sbjct: 181 HRAPAPSPALLGPPAPPSEAPAGSEEGPSPSPSLEDKSGAEAL---MKVAGSLALGWAAV 240

[Close]

BLAST of Sed0012586 vs. ExPASy TrEMBL
Match: Q9XIV1 (Arabinogalactan protein OS=Cucumis sativus OX=3659 GN=Csa_6G493850 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.0e-25
Identity = 118/245 (48.16%), Postives = 129/245 (52.65%), Query Frame = 0


Query: 1   MGRQFAIALILIVAV---VGGKSPT----------------------------------- 60
           MGRQ  IAL+LI AV   VGG+SP                                    
Sbjct: 1   MGRQSVIALVLICAVVAGVGGQSPAAAPTTTPAATPPVAATYPPPAASPVSTPTNPSPAA 60

Query: 61  -----ATPVAKSPTPASSPVVPSPNSSPPPTSPPLASSPDS---FESVRSGGSPPATTRV 120
                ATP   S  PAS+P   +P +SPP ++PP AS P S     SV     P AT   
Sbjct: 61  APQKPATPAPVSTPPASAPPAVAPVASPPASTPPTASVPASSPPAASVPPSSPPAATVPA 120

Query: 121 SSPPVPAPASSPPVPVLEISPLALMPT---TAPESS---PVESPPVEVPSPVPSKKKSKK 180
           SSPPVP P SSPPV V   SP    PT    APESS   PV SPPVEVP+P PSKKKSKK
Sbjct: 121 SSPPVPVPVSSPPVSVPVSSPPVPTPTESPPAPESSPPAPVASPPVEVPAPAPSKKKSKK 180

Query: 181 HEALAPSPTFLDPPARPS-----SEEGPAPRPSLDDKSGDEALRNMQTVAGSLGLGLAAA 189
           H A APSP  L PPA PS     SEEGPAP PSL+DKSG EAL     VAGSL LG AA 
Sbjct: 181 HRAPAPSPALLGPPAPPSEAPAGSEEGPAPSPSLEDKSGAEAL---MKVAGSLALGWAAV 240

[Close]

BLAST of Sed0012586 vs. ExPASy TrEMBL
Match: A0A6J1IK34 (lysine-rich arabinogalactan protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111478152 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 117/254 (46.06%), Postives = 132/254 (51.97%), Query Frame = 0


Query: 1   MGRQFAIALILIVAV---VGGKSPTATP----------VAKSPTPASSPVVPSPNSSP-- 60
           MGRQ  IAL+LI AV   VGG+SP A P           AK   PA+SPV P  NSSP  
Sbjct: 1   MGRQSVIALVLICAVIAGVGGQSPAAAPTSVPGATSPAAAKHTPPAASPVSPPTNSSPVA 60

Query: 61  --------------------------------------PPTSPPLASSPDS---FESVRS 120
                                                 PP+SPP AS P S     SV +
Sbjct: 61  APQKPATPAPVSTPPASAPLAVAPVASPPVSTPPTASVPPSSPPAASVPASSPPTASVPA 120

Query: 121 GGSPPATTRVSSPPVPAPASSPPVPVLEISPLALMPTTA-----PESSPVESPPVEVPSP 180
              P A+   SSPPV  PASSPPVPV E SP    PT +     P S+P  +PPVEVP+P
Sbjct: 121 ISPPAASVPASSPPVLVPASSPPVPVPESSPPVSTPTQSPPAPTPTSTPESAPPVEVPAP 180

Query: 181 VPSKKKSKKHEALAPSPTFLDPPARPS-----SEEGPAPRPSLDDKSGDEALRNMQTVAG 189
            PS  KSKKH+A APSP  L PPA PS     SEEGP+P PSL+DKSG EAL   Q VAG
Sbjct: 181 APS-NKSKKHKAPAPSPALLGPPAPPSEAPGASEEGPSPGPSLEDKSGAEAL---QKVAG 240

[Close]

BLAST of Sed0012586 vs. TAIR 10
Match: AT4G37450.1 (arabinogalactan protein 18 )

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-16
Identity = 90/219 (41.10%), Postives = 116/219 (52.97%), Query Frame = 0


Query: 1   MGRQFAIALILI---VAVVGGKSPTATPVAKSPT--------PASSPVVPSPNSSPPPTS 60
           M R F + + LI   VA VGG+SP ++P  KSPT        P  SP V SP ++P  T 
Sbjct: 1   MDRNFLLTVTLICIVVAGVGGQSPISSP-TKSPTTPSAPTTSPTKSPAVTSPTTAPAKTP 60

Query: 61  PPLASSPDSFESVRSGGSPPATTRVSSPPVPAPASSPPVPV-LEISPLALMPTTAPES-- 120
              ASSP     V S  SP   +  S PP P P SSPPVP  +  SP++  P  AP +  
Sbjct: 61  TASASSP-----VESPKSPAPVSESSPPPTPVPESSPPVPAPMVSSPVSSPPVPAPVADS 120

Query: 121 --SPVESPPVEVPSPVPSK-----KKSKKHEAL-APSPTFLDPPARPSSEEGP-----AP 180
             +PV +P  +VP+P PSK     KKSKKH+A  AP+P  L PPA P+   GP     +P
Sbjct: 121 PPAPVAAPVADVPAPAPSKHKKTTKKSKKHQAAPAPAPELLGPPAPPTESPGPNSDAFSP 180

Query: 181 RPSLDDKSGDEALRNMQTVAGSLGLGLAAAAAAAVSFMF 193
            PS DD+SG  + R ++ VA    +G  A A A +   F
Sbjct: 181 GPSADDQSGAASTRVLRNVA----VGAVATAWAVLVMAF 209

[Close]

BLAST of Sed0012586 vs. TAIR 10
Match: AT2G14890.2 (arabinogalactan protein 9 )

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-10
Identity = 67/172 (38.95%), Postives = 89/172 (51.74%), Query Frame = 0


Query: 1   MGRQFAIALILIVAVVG--GKSPTATPVAKSPTPASSPVVPSPNSSPPPTS--PPLASSP 60
           M R FAIA+I IV + G  G++PT+ P A +P P  +P  P P ++PPP S  PP+ +SP
Sbjct: 1   MARSFAIAVICIVLIAGVTGQAPTSPPTA-TPAP-PTPTTPPPAATPPPVSAPPPVTTSP 60

Query: 61  DSFESVRSGGSPPATTRVSSPP-------VPAPASSPPVPVLEISPLALMPTTAPESSPV 120
               +     +PP    VSSPP        P P +SPP PV    P    P   P  +P+
Sbjct: 61  PPVTTAPPPANPPPP--VSSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPL 120

Query: 121 ESPPVEVPSPVPSKKKSKKHEALAPSPTFLDPPARPSSEEGPAPRPSLDDKS 162
            SPP +VP+P P+ K        +PSP+    P  PSS+   AP PS D  S
Sbjct: 121 ASPPAQVPAPAPTTKPD------SPSPSPSSSPPLPSSD---APGPSTDSIS 159

[Close]

BLAST of Sed0012586 vs. TAIR 10
Match: AT2G14890.1 (arabinogalactan protein 9 )

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-10
Identity = 67/172 (38.95%), Postives = 89/172 (51.74%), Query Frame = 0


Query: 1   MGRQFAIALILIVAVVG--GKSPTATPVAKSPTPASSPVVPSPNSSPPPTS--PPLASSP 60
           M R FAIA+I IV + G  G++PT+ P A +P P  +P  P P ++PPP S  PP+ +SP
Sbjct: 1   MARSFAIAVICIVLIAGVTGQAPTSPPTA-TPAP-PTPTTPPPAATPPPVSAPPPVTTSP 60

Query: 61  DSFESVRSGGSPPATTRVSSPP-------VPAPASSPPVPVLEISPLALMPTTAPESSPV 120
               +     +PP    VSSPP        P P +SPP PV    P    P   P  +P+
Sbjct: 61  PPVTTAPPPANPPPP--VSSPPPASPPPATPPPVASPPPPVASPPPATPPPVATPPPAPL 120

Query: 121 ESPPVEVPSPVPSKKKSKKHEALAPSPTFLDPPARPSSEEGPAPRPSLDDKS 162
            SPP +VP+P P+ K        +PSP+    P  PSS+   AP PS D  S
Sbjct: 121 ASPPAQVPAPAPTTKPD------SPSPSPSSSPPLPSSD---APGPSTDSIS 159

[Close]

BLAST of Sed0012586 vs. TAIR 10
Match: AT4G18670.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.7e-04
Identity = 55/141 (39.01%), Postives = 70/141 (49.65%), Query Frame = 0


Query: 20  SPTATPVAKSP--TPASSPVVPSPNSSPP--PTSPPLASSPDSFESVRS-GGSPPATTRV 79
           SP  +P   +P  +P SSP  P+P  SPP  PT+P    SP S  +  S GGSPP+ +  
Sbjct: 467 SPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPSPGGSPPSPSIS 526

Query: 80  SSPP--VPAPASSPPVPVLEISPLALMPTTAPESSPVESPPVEVPSPVPSKKKSKKHEAL 139
            SPP  VP+P S+P  P    SP +  P     SSP+ SPP     P P     +    +
Sbjct: 527 PSPPITVPSPPSTPTSPGSPPSPSSPTP-----SSPIPSPPTPSTPPTPI-SPGQNSPPI 586

Query: 140 APSPTFLDPPARPSSEEGPAP 154
            PSP F   P+ PSS   P P
Sbjct: 587 IPSPPFTG-PSPPSSPSPPLP 600

The following BLAST results are available for this feature:

BLAST of Sed0012586 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963306.1	1.2e-33	52.46	lysine-rich arabinogalactan protein 18-like [Cucurbita moschata]	[more]
KAG6595001.1	2.1e-33	52.05	hypothetical protein SDJN03_11554, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023517454.1	2.1e-33	52.46	lysine-rich arabinogalactan protein 18-like [Cucurbita pepo subsp. pepo]	[more]
XP_023003133.1	8.1e-33	52.76	lysine-rich arabinogalactan protein 18-like [Cucurbita maxima]	[more]
XP_038883640.1	2.4e-29	48.79	lysine-rich arabinogalactan protein 18 [Benincasa hispida]	[more]

BLAST of Sed0012586 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FPR2	7.9e-15	41.10	Lysine-rich arabinogalactan protein 18 OS=Arabidopsis thaliana OX=3702 GN=AGP18 ...	[more]
Q9C5S0	2.9e-09	38.95	Classical arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=AGP9 PE=1...	[more]

BLAST of Sed0012586 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFT1	6.0e-34	52.46	lysine-rich arabinogalactan protein 18-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KVL2	3.9e-33	52.76	lysine-rich arabinogalactan protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3B0X7	6.1e-26	49.39	lysine-rich arabinogalactan protein 18-like OS=Cucumis melo OX=3656 GN=LOC103484...	[more]
Q9XIV1	1.0e-25	48.16	Arabinogalactan protein OS=Cucumis sativus OX=3659 GN=Csa_6G493850 PE=2 SV=1	[more]
A0A6J1IK34	1.7e-23	46.06	lysine-rich arabinogalactan protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of Sed0012586 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37450.1	5.6e-16	41.10	arabinogalactan protein 18	[more]
AT2G14890.2	2.1e-10	38.95	arabinogalactan protein 9	[more]
AT2G14890.1	2.1e-10	38.95	arabinogalactan protein 9	[more]
AT4G18670.1	1.7e-04	39.01	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..168
IPR044981	Lysine-rich arabinogalactan protein AGP9/17/18	PANTHER	PTHR37209	LYSINE-RICH ARABINOGALACTAN PROTEIN 17-RELATED	coord: 5..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012586.1	Sed0012586.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane