Sed0012567 (gene) Chayote v1

Overview


Name	Sed0012567
Type	gene
Organism	Sechium edule (Chayote v1)
Description	stress-induced protein KIN2-like
Location	LG03: 1782499 .. 1783355 (+)
RNA-Seq Expression	Sed0012567
Synteny	Sed0012567

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACAACTCTCAAAAGATGAGTTACCATGCTGGAGAGGCCAAAGGCCAAGCTCAGGTTTTTAAACTCTTACCTTATTTTCATTTATAACCATATATTAATGAGATGTATCAACAAATTTATTATTAGAGTTTTCTACATCTGATTGTTTATATCATCATCAAGTATACGTCTTGTACACCGAATGGCATTGAAGCTTGATAGTTGCGAGGATAAATTGAATTTCAAGTCAATCTGTTATTAGGTGAATTACACATTATTAACCCATTTGGTGAATTAATTGAAACTTGAGTTAATATTAGGGGTTAGTTAATTAACTAACCATGAGAGTTGTGTAAAATGTGTGTTATATATAAATCACATTTAGATTATCTTTTTCCTTGAGAGAGAGTTAGAAACCCTAGCCACCTTTGAGAACCCTTGTACAAATCTATGACAATGACATTTAGATGGTGAATCGATCAAGCTCAATTGATTCACAACAGCGGAGTAGGGATGTTTTCAAACCACTTAAATTTGACGTGTTTTGTCTCTCTTCTCCATTTTATCCTTTTTTATTTAGTTTGATGTTGGATTAGAGTTGCATAGATCTAGATTTTATTAATGCACAATCTTTTTAGTCTCTGGTTCAAATCCGAGTTGGTACATCAAAAAAAATATACGTCTCGTACTATTTTTAACAATTATAACATGTTAGTTTCGTATTGATAATATAGGAGAAGGCTAGCAATATGATGGACAAAGCGAGTGATGCCGCTCAATCAGCTAAAGAATCGATGCAAGAGACAGGACAACAAATGCAAGCCAAGGCACAAGGAGCAGCAGATGCTGTCAAGAATGCTATGAATAAATGA

mRNA sequence

ATGGCTGACAACTCTCAAAAGATGAGTTACCATGCTGGAGAGGCCAAAGGCCAAGCTCAGGAGAAGGCTAGCAATATGATGGACAAAGCGAGTGATGCCGCTCAATCAGCTAAAGAATCGATGCAAGAGACAGGACAACAAATGCAAGCCAAGGCACAAGGAGCAGCAGATGCTGTCAAGAATGCTATGAATAAATGA

Coding sequence (CDS)

ATGGCTGACAACTCTCAAAAGATGAGTTACCATGCTGGAGAGGCCAAAGGCCAAGCTCAGGAGAAGGCTAGCAATATGATGGACAAAGCGAGTGATGCCGCTCAATCAGCTAAAGAATCGATGCAAGAGACAGGACAACAAATGCAAGCCAAGGCACAAGGAGCAGCAGATGCTGTCAAGAATGCTATGAATAAATGA

Protein sequence

MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVKNAMNK

Homology

[Close]

BLAST of Sed0012567 vs. NCBI nr
Match: XP_004141485.1 (late embryogenesis abundant protein 2 [Cucumis sativus] >KGN52546.1 hypothetical protein Csa_008504 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 2.9e-19
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVK 60
          MADNSQKMSYHAGEAKGQ QEK SNMMDKASDAAQSAKES+QETGQQM AKAQGAADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVK 60

Query: 61 NAMNK 66
          +A+NK
Sbjct: 61 DAVNK 65

[Close]

BLAST of Sed0012567 vs. NCBI nr
Match: XP_008437025.1 (PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0043490.1 stress-induced protein KIN2-like [Cucumis melo var. makuwa])

HSP 1 Score: 101.7 bits (252), Expect = 2.5e-18
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVK 60
          MADNSQKMSYH GEAKGQAQEKASNMMDKASD AQSAKESMQE GQQM+AKAQGAADAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 NA--MNK 66
          +A  MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Sed0012567 vs. NCBI nr
Match: XP_022159716.1 (stress-induced protein KIN2-like [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 2.5e-18
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVK 60
          MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQE GQQ++AKAQG ADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVK 60

Query: 61 NA--MNK 66
          +A  MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Sed0012567 vs. NCBI nr
Match: XP_022159706.1 (stress-induced protein KIN2-like [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 2.5e-18
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVK 60
          MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKES+QE GQQ++AKAQGAADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVK 60

Query: 61 NA--MNK 66
          +A  MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Sed0012567 vs. NCBI nr
Match: GAV60064.1 (hypothetical protein CFOL_v3_03595 [Cephalotus follicularis])

HSP 1 Score: 100.9 bits (250), Expect = 4.2e-18
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVK 60
          MADNSQKMSYHAGEAKGQAQEKA  MMDKAS+AAQSAKESMQETGQQM+AKAQGAADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKAGTMMDKASNAAQSAKESMQETGQQMKAKAQGAADAVK 60

Query: 61 NA--MNK 66
          +A  MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Sed0012567 vs. ExPASy TrEMBL
Match: A0A0A0KXN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643250 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-19
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVK 60
          MADNSQKMSYHAGEAKGQ QEK SNMMDKASDAAQSAKES+QETGQQM AKAQGAADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQTQEKMSNMMDKASDAAQSAKESVQETGQQMMAKAQGAADAVK 60

Query: 61 NAMNK 66
          +A+NK
Sbjct: 61 DAVNK 65

[Close]

BLAST of Sed0012567 vs. ExPASy TrEMBL
Match: A0A5A7TJP0 (Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1167G00300 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVK 60
          MADNSQKMSYH GEAKGQAQEKASNMMDKASD AQSAKESMQE GQQM+AKAQGAADAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 NA--MNK 66
          +A  MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Sed0012567 vs. ExPASy TrEMBL
Match: A0A6J1E4Q8 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVK 60
          MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKES+QE GQQ++AKAQGAADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESVQEAGQQVKAKAQGAADAVK 60

Query: 61 NA--MNK 66
          +A  MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Sed0012567 vs. ExPASy TrEMBL
Match: A0A6J1E4S0 (stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVK 60
          MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQE GQQ++AKAQG ADAVK
Sbjct: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQEAGQQVKAKAQGVADAVK 60

Query: 61 NA--MNK 66
          +A  MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Sed0012567 vs. ExPASy TrEMBL
Match: A0A1S3ASP1 (stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVK 60
          MADNSQKMSYH GEAKGQAQEKASNMMDKASD AQSAKESMQE GQQM+AKAQGAADAVK
Sbjct: 1  MADNSQKMSYHVGEAKGQAQEKASNMMDKASDTAQSAKESMQEAGQQMKAKAQGAADAVK 60

Query: 61 NA--MNK 66
          +A  MNK
Sbjct: 61 DATGMNK 67

[Close]

BLAST of Sed0012567 vs. TAIR 10
Match: AT5G38760.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 79.7 bits (195), Expect = 9.4e-16
Identity = 47/67 (70.15%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVK 60
          M+ NSQ +S+ AG+AKGQ QEKAS MMDKAS+AAQSAKES++ETGQQ++ KAQGA ++VK
Sbjct: 1  MSSNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVK 60

Query: 61 NA--MNK 66
          NA  MNK
Sbjct: 61 NATGMNK 67

[Close]

BLAST of Sed0012567 vs. TAIR 10
Match: AT5G53820.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 75.5 bits (184), Expect = 1.8e-14
Identity = 41/60 (68.33%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MADNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVK 60
          M++NSQ MS++AG+AKGQ QEKASN++DKAS+AAQSAKES+QE GQQ++ KAQGA++ +K
Sbjct: 1  MSNNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIK 60

[Close]

BLAST of Sed0012567 vs. TAIR 10
Match: AT3G02480.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 70.1 bits (170), Expect = 7.5e-13
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 3  DNSQKMSYHAGEAKGQAQEKASNMMDKASDAAQSAKESMQETGQQMQAKAQGAADAVKN- 62
          DN Q  SY AG+A GQ +EKA  MMDKA DAA SA++S+Q+TGQQM+ KAQGAAD VK+ 
Sbjct: 2  DNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKDK 61

Query: 63 -AMNK 66
            MNK
Sbjct: 62 TGMNK 66

The following BLAST results are available for this feature:

BLAST of Sed0012567 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141485.1	2.9e-19	90.77	late embryogenesis abundant protein 2 [Cucumis sativus] >KGN52546.1 hypothetical...	[more]
XP_008437025.1	2.5e-18	89.55	PREDICTED: stress-induced protein KIN2-like [Cucumis melo] >KAA0043490.1 stress-...	[more]
XP_022159716.1	2.5e-18	89.55	stress-induced protein KIN2-like [Momordica charantia]	[more]
XP_022159706.1	2.5e-18	89.55	stress-induced protein KIN2-like [Momordica charantia]	[more]
GAV60064.1	4.2e-18	89.55	hypothetical protein CFOL_v3_03595 [Cephalotus follicularis]	[more]

BLAST of Sed0012567 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0012567 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXN2	1.4e-19	90.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G643250 PE=4 SV=1	[more]
A0A5A7TJP0	1.2e-18	89.55	Stress-induced protein KIN2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A6J1E4Q8	1.2e-18	89.55	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026049 ...	[more]
A0A6J1E4S0	1.2e-18	89.55	stress-induced protein KIN2-like OS=Momordica charantia OX=3673 GN=LOC111026055 ...	[more]
A0A1S3ASP1	1.2e-18	89.55	stress-induced protein KIN2-like OS=Cucumis melo OX=3656 GN=LOC103482578 PE=4 SV...	[more]

BLAST of Sed0012567 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38760.1	9.4e-16	70.15	Late embryogenesis abundant protein (LEA) family protein	[more]
AT5G53820.1	1.8e-14	68.33	Late embryogenesis abundant protein (LEA) family protein	[more]
AT3G02480.1	7.5e-13	64.62	Late embryogenesis abundant protein (LEA) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 27..47
None	No IPR available	GENE3D	6.10.140.1430		coord: 2..45 e-value: 6.7E-6 score: 28.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	PANTHER	PTHR34191:SF15	BNAA01G32930D PROTEIN	coord: 1..63
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012567.1	Sed0012567.1	mRNA