Sed0012538 (gene) Chayote v1

Overview


Name	Sed0012538
Type	gene
Organism	Sechium edule (Chayote v1)
Description	28 kDa ribonucleoprotein, chloroplastic
Location	LG12: 2649892 .. 2652442 (-)
RNA-Seq Expression	Sed0012538
Synteny	Sed0012538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCCGCCGGAGCCTCCTTCAAAACTCCGATAAGGGGTTCAAGGTCCAACCACCGGCTCTCCGATTCTCTCATAACAACCCCATCAACCCAAATGTTGCGGCCCATCTTGTCCTATTCTCTGGCAATCGAATCGCCGCCGTTCAGAGCTTGGCGGCCGGTTCTGGGCATCTCTGCCGCCGTCGTGCAAGGAGAGGCGGCTGTGACAAATGGTTTTGAAGAGGGTGTGGCGGAGGAGACGGCGGTGGACGGCGGTTCTCCGGTGGATTTCGGTAGTAGTACTACTACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCCCAGCTTGCTGCTATTGTTCAGGATCATGGGGTTGCTGAGCTTATTGAGGTAAATTGCCTGCAAAATGTCAACGGTTAATTTAAGTCGTTTGATAACCATTTTGTTTTTTGTTTTTTGTTTATGAAATTTAAACCTACAACAAATATCTTACAGTACCTTTATTTCTTATTTGGATATCTACATGTTACCTATATTTTAATTAACAAAACCAAAATTTGTAAACAAAAAAAAAATCAAATGGTTATCAAACGGGCCTTATATATTGAATTCTGATTTATGGTTTCACTTCTATTTAATGGCATTATGTGAAAACTTTGCTTAAGAAGCCAACCTCATGAGAGACTTGGTTTACTTTTAGGGCTTCAAATCACAATGGATATATTTAAGCAACTGTTCCAATTCTTTTTGTATAATATATGTTTTTTGAAGTAATGAACTCAAGCTTTGGCTGTCACCTGACACCTACCCAAGATCCTACCAGCTTTTGAAATGTTGTAGGTTTTATTTTTAGAAACTCGAAAACTGGAGTTTCGCTCCATTATATCCCAGGTAACCACGCCTGTCTCTAGGCTAGGCATCGGGAAGTATCGAAAGAATGGAGACATGGAAGATGTCTACAAATAAATATTACACGAGAGTCTCGAAATGTTTGTCGAGAATTGAGTATATAACTTATCTTCTTATATATTCGTGAGTGTACATGACATAGTATCCGATCTTACAACTTTTGAATGTAATTTATAAAGAAATTAATTGCTAGGTGATTACCATAAATTGAACCCATTACTTCTTAGTTCTCAAAGCTTTTTGACCATTAGGCCATTCACCATAACCCACTAACTTGTTTAAGGGAATATGGGTTTGGTATTTGGTGGCAATTATAAGTCCATCCATGAGACATACAATCATGGAATGAAACCATTGTAGAATAGTATGATTATGTTGCTAGGGTGCTACTGTGGATAATATCCTATGTGTTACTTTTTAATAATGTCCCCTTTGTTAACCACCATCTAGAGCCTAGTGATCAAAATGACATTAAAACATCAAAAAGTTGTAGATTCAATTCATGATGGTCATCTACTTAAGATTAATGTTCTTAGTAAGGCTAGCTAAATATTTCGTGAGATTACTTGTGGTGTATATAAGCTAGTCAAGACGAGTGTGGACATTATTATTAAAAAAAAGAACACTGACCTTAATTACAAGCTAGACAAGGGAATCTACTTTCTTCTTTCCATTGAAGGCTTGACTCATCATGACCATCTTAACAATAATTAAAAAAAAAAAAGAAGAAGAAGAAGAAGAAGAATAAACTTGTACATACTACATAGATGAACCACAGTTATTTCATATATTAATGACTATTAAACATATAAAAACTCCTATGCTGCTTGAAAAGAAGTTCCATTGTTGCAAATTGCAATCTCATTGATCTAATCTTTAAAACAGACTTCTGGTCGTCTGCATTCGAATTTCGATCTTTACTTTGAACTAATCACCAAGAGCATATTTCCATATTAATTCTCATGCCTCTTTAGAGTCTAATCAATTCGAATGGTATAAGGTTTTGTATGACAGAAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGTGTTGAAGATTGCAATAAAGTCATAGAAAATCTGGATGGAACTGTAAGAATCTCACACTTTCATTCTCTCTTTATTTTCTATGTCCAAGTACAGTTATAAGTGGAGAACTATGGGACTTTGATGCTAAATATGAGTATCACTTATATCCAGGCTTACATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCTAAGCCTAAGGAACCCTTATATCCAGAAACTGAGTATAAACTTTTTGTGGGAAATTTATCCTGGTCAGTTACATCAGAAAGTTTGGCACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTCATCTATAATGGAGAGACCGGGCAGTCACGAGGTTATGGCTTTGTATCGTATCCGACTAAGTCAGAGATGGAAACAGCTCTTGGAGCTCTTAATGAAATGGTAAGAGTCTTTCTTAGTTTCTCCTGTATCTTTTTGTTCACATGGTTTGTTATTATATCATATAACATCATGTAGCTCAATTATGTCTATTTTTCAACTTCGTAGGAACTTGAAGGCAGGGTAATACGCGTAAGCCTGGCTGAAGGAAAACAGGTACAAGGGTAA

mRNA sequence

ATGGCCGCCGCCGCCGGAGCCTCCTTCAAAACTCCGATAAGGGGTTCAAGGTCCAACCACCGGCTCTCCGATTCTCTCATAACAACCCCATCAACCCAAATGTTGCGGCCCATCTTGTCCTATTCTCTGGCAATCGAATCGCCGCCGTTCAGAGCTTGGCGGCCGGTTCTGGGCATCTCTGCCGCCGTCGTGCAAGGAGAGGCGGCTGTGACAAATGGTTTTGAAGAGGGTGTGGCGGAGGAGACGGCGGTGGACGGCGGTTCTCCGGTGGATTTCGGTAGTAGTACTACTACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCCCAGCTTGCTGCTATTGTTCAGGATCATGGGGTTGCTGAGCTTATTGAGGTTTTGTATGACAGAAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGTGTTGAAGATTGCAATAAAGTCATAGAAAATCTGGATGGAACTGCTTACATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCTAAGCCTAAGGAACCCTTATATCCAGAAACTGAGTATAAACTTTTTGTGGGAAATTTATCCTGGTCAGTTACATCAGAAAGTTTGGCACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTCATCTATAATGGAGAGACCGGGCAGTCACGAGGTTATGGCTTTGTATCGTATCCGACTAAGTCAGAGATGGAAACAGCTCTTGGAGCTCTTAATGAAATGGAACTTGAAGGCAGGGTAATACGCGTAAGCCTGGCTGAAGGAAAACAGGTACAAGGGTAA

Coding sequence (CDS)

ATGGCCGCCGCCGCCGGAGCCTCCTTCAAAACTCCGATAAGGGGTTCAAGGTCCAACCACCGGCTCTCCGATTCTCTCATAACAACCCCATCAACCCAAATGTTGCGGCCCATCTTGTCCTATTCTCTGGCAATCGAATCGCCGCCGTTCAGAGCTTGGCGGCCGGTTCTGGGCATCTCTGCCGCCGTCGTGCAAGGAGAGGCGGCTGTGACAAATGGTTTTGAAGAGGGTGTGGCGGAGGAGACGGCGGTGGACGGCGGTTCTCCGGTGGATTTCGGTAGTAGTACTACTACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCCCAGCTTGCTGCTATTGTTCAGGATCATGGGGTTGCTGAGCTTATTGAGGTTTTGTATGACAGAAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGTGTTGAAGATTGCAATAAAGTCATAGAAAATCTGGATGGAACTGCTTACATGGGCAGAATTTTGAGGGTTAATTTCTCAGACAAACCTAAGCCTAAGGAACCCTTATATCCAGAAACTGAGTATAAACTTTTTGTGGGAAATTTATCCTGGTCAGTTACATCAGAAAGTTTGGCACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTCATCTATAATGGAGAGACCGGGCAGTCACGAGGTTATGGCTTTGTATCGTATCCGACTAAGTCAGAGATGGAAACAGCTCTTGGAGCTCTTAATGAAATGGAACTTGAAGGCAGGGTAATACGCGTAAGCCTGGCTGAAGGAAAACAGGTACAAGGGTAA

Protein sequence

MAAAAGASFKTPIRGSRSNHRLSDSLITTPSTQMLRPILSYSLAIESPPFRAWRPVLGISAAVVQGEAAVTNGFEEGVAEETAVDGGSPVDFGSSTTTKLYFGNLPYSVDSSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVSYPTKSEMETALGALNEMELEGRVIRVSLAEGKQVQG

Homology

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BLAST of Sed0012538 vs. NCBI nr
Match: XP_004134038.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN56810.1 hypothetical protein Csa_010830 [Cucumis sativus])

HSP 1 Score: 428.7 bits (1101), Expect = 3.7e-116
Identity = 230/276 (83.33%), Postives = 244/276 (88.41%), Query Frame = 0


Query: 2   AAAAGAS-FKTPIRGSRSNHRLSDSLITTPSTQMLRPILSYSLAIESPPFRA----WRPV 61
           AAA GAS F T +RGSRS H LSDSL+ TPSTQ+L PILS SLAIESP  RA    WRPV
Sbjct: 5   AAATGASFFATSLRGSRSKHWLSDSLLATPSTQVL-PILSRSLAIESPLLRASSEKWRPV 64

Query: 62  LGISAAVVQGEAAVTNGFEEGVAEETAVDGGSPVDFGSSTTTKLYFGNLPYSVDSSQLAA 121
           + ISAAVVQGE AVT G EEGV EET V+GGSPV+ GS   TKLYFGNLPYSVDSSQLAA
Sbjct: 65  MIISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESGS---TKLYFGNLPYSVDSSQLAA 124

Query: 122 IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNFSDK 181
           IVQD+G+AELIEVLYDRNTGKSRGFAFVTMSS+EDCNKVIENLDG+AYMGRILRVNFSDK
Sbjct: 125 IVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDK 184

Query: 182 PKPKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVS 241
           PKPKEPLYPETEYKLFVGNLSWSVTSE L QAFQEYGNVVGARVIY+GETG+SRGYGFVS
Sbjct: 185 PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVS 244

Query: 242 YPTKSEMETALGALNEMELEGRVIRVSLAEGKQVQG 273
           Y TKSEMETAL  +NE+ELEGRVIRVSLAEGKQ  G
Sbjct: 245 YSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 276

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BLAST of Sed0012538 vs. NCBI nr
Match: XP_016898952.1 (PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo])

HSP 1 Score: 426.4 bits (1095), Expect = 1.8e-115
Identity = 229/266 (86.09%), Postives = 237/266 (89.10%), Query Frame = 0


Query: 2   AAAAGAS-FKTPIRGSRSNHRLSDSLITTPSTQMLRPILSYSLAIESPPFRA----WRPV 61
           AAA GAS F TP+RGSRS H  SDSL+ TPSTQ+L PILS SL IESPP RA    WRPV
Sbjct: 5   AAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVL-PILSRSLTIESPPLRASSERWRPV 64

Query: 62  LGISAAVVQGEAAVTNGFEEGVAEETAVDGGSPVDFGSSTTTKLYFGNLPYSVDSSQLAA 121
           L ISAAVVQGE AV  G EEGV EETAV+GGSPV+ GS   TKLYFGNLPYSVDSSQLAA
Sbjct: 65  LIISAAVVQGETAVMVGVEEGVEEETAVEGGSPVESGS---TKLYFGNLPYSVDSSQLAA 124

Query: 122 IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNFSDK 181
           IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSS+EDCNKVIENLDGTAYMGRILRVNFSDK
Sbjct: 125 IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDK 184

Query: 182 PKPKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVS 241
           PKPKEPLYPETEYKLFVGNLSWSVTSE L QAFQEYGNVVGARVIYNGETG+SRGYGFVS
Sbjct: 185 PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRGYGFVS 244

Query: 242 YPTKSEMETALGALNEMELEGRVIRV 263
           Y TKSEMETAL ALNE+ELEGRVIRV
Sbjct: 245 YSTKSEMETALEALNEVELEGRVIRV 266

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BLAST of Sed0012538 vs. NCBI nr
Match: KAA0049207.1 (putative G3BP-like protein [Cucumis melo var. makuwa] >TYK17351.1 putative G3BP-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 412.5 bits (1059), Expect = 2.8e-111
Identity = 221/257 (85.99%), Postives = 229/257 (89.11%), Query Frame = 0


Query: 2   AAAAGAS-FKTPIRGSRSNHRLSDSLITTPSTQMLRPILSYSLAIESPPFRA----WRPV 61
           AAA GAS F TP+RGSRS H  SDSL+ TPSTQ+L PILS SL IESPP RA    WRPV
Sbjct: 5   AAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVL-PILSRSLTIESPPLRASSERWRPV 64

Query: 62  LGISAAVVQGEAAVTNGFEEGVAEETAVDGGSPVDFGSSTTTKLYFGNLPYSVDSSQLAA 121
           L ISAAVVQGE AVT G EEGV EETAV+GGSPV+ GS   TKLYFGNLPYSVDSSQLAA
Sbjct: 65  LIISAAVVQGETAVTVGVEEGVEEETAVEGGSPVESGS---TKLYFGNLPYSVDSSQLAA 124

Query: 122 IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNFSDK 181
           IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSS+EDCNKVIENLDGTAYMGRILRVNFSDK
Sbjct: 125 IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDK 184

Query: 182 PKPKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVS 241
           PKPKEPLYPETEYKLFVGNLSWSVTSE L QAFQEYGNVVGARVIYNGETG+SRGYGFVS
Sbjct: 185 PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRGYGFVS 244

Query: 242 YPTKSEMETALGALNEM 254
           Y TKSEMETAL ALNE+
Sbjct: 245 YSTKSEMETALEALNEV 257

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BLAST of Sed0012538 vs. NCBI nr
Match: XP_022157973.1 (28 kDa ribonucleoprotein, chloroplastic [Momordica charantia])

HSP 1 Score: 408.7 bits (1049), Expect = 4.0e-110
Identity = 223/282 (79.08%), Postives = 236/282 (83.69%), Query Frame = 0


Query: 2   AAAAGASFKT---PIRGSRSNHRLSDSLITTPSTQMLRPILSYSLAIESPPFRA----WR 61
           AA  G+SF       +G RS H LSDSL+  PSTQML P+LS  LA+ES   RA    WR
Sbjct: 5   AATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQML-PVLSRYLALESASLRAFSEKWR 64

Query: 62  PVLGISAAVVQGEAAVTNGFEEGVAEE----TAVDGGSPVDFGSSTTTKLYFGNLPYSVD 121
           PVLGISAAVVQGE AVT   EEGVAEE     AV GGSPV+ GS   TKLYFGNLPYSVD
Sbjct: 65  PVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGS---TKLYFGNLPYSVD 124

Query: 122 SSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILR 181
           SSQLA IVQ+HGV ELIEVLYDRNTGKSRGFAFVTMSS+EDCN+VIENLDG+AYMGR+LR
Sbjct: 125 SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR 184

Query: 182 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSR 241
           VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESL QAFQEYGNVVGARVIYNGETG+SR
Sbjct: 185 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 244

Query: 242 GYGFVSYPTKSEMETALGALNEMELEGRVIRVSLAEGKQVQG 273
           GYGFVSY TK EME AL ALNE+ELEGRVIRVSLAEGKQ QG
Sbjct: 245 GYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 282

[Close]

BLAST of Sed0012538 vs. NCBI nr
Match: KAG6597332.1 (Nuclear transport factor 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 393.7 bits (1010), Expect = 1.3e-105
Identity = 219/283 (77.39%), Postives = 235/283 (83.04%), Query Frame = 0


Query: 1   MAAAAGASFKTPIRGSRSNHRLSDSLITTPSTQMLRPILSYSLAIESPPFRA----WRPV 60
           MA AAGAS  T  R       LSD+L+TTPS  M  PILS SLAIES P RA    WRP 
Sbjct: 13  MATAAGASIFTTKRW------LSDALLTTPSALMF-PILSRSLAIESAPLRAFSERWRPA 72

Query: 61  LGISAAVVQGEAAVTNGFEEGVAEET-------AVDGGSPVDFGSSTTTKLYFGNLPYSV 120
           LGISAAVVQ +AAVT G EEGVA+ET       AVDGGSPV+ G    TKLYFGNLPYSV
Sbjct: 73  LGISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGK---TKLYFGNLPYSV 132

Query: 121 DSSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRIL 180
           DSSQLA IVQD+GVAELIEVLYDRNTGKSRGFAFVTMSS+EDCNKVIENLDGTAYMGR+L
Sbjct: 133 DSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLL 192

Query: 181 RVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQS 240
           RVNFSDKPKPK  LYP++EY+L+V NLSWSVTSESLAQAFQEYGNVVGARVIY+ ETG+S
Sbjct: 193 RVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKS 252

Query: 241 RGYGFVSYPTKSEMETALGALNEMELEGRVIRVSLAEGKQVQG 273
           RGYGFVSY TKSEMETAL A NE+ELEGRVIRVSLA+GKQ QG
Sbjct: 253 RGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 285

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BLAST of Sed0012538 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.1e-38
Identity = 94/217 (43.32%), Postives = 134/217 (61.75%), Query Frame = 0


Query: 58  GISAAVVQGEA----AVTNGFEEGVAEETAVDGGSPVDFGSSTTTKLYFGNLPYSVDSSQ 117
           G + AV++GE+    AV+ G E  V++E  V+GG           KL+ GNLPY VDS +
Sbjct: 12  GSTNAVLEGESDPEGAVSWGSETQVSDEGGVEGGQGFS-EPPEEAKLFVGNLPYDVDSEK 71

Query: 118 LAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNF 177
           LA I    GV E+ EV+Y+R T +SRGF FVTMS+VE+  K +E L+G    GR L VN 
Sbjct: 72  LAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN- 131

Query: 178 SDKPKPKEPLYPETEY----KLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQS 237
              P+      P  ++    +++VGNL W V +  L Q F E+G VV ARV+ + ETG+S
Sbjct: 132 KAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRS 191

Query: 238 RGYGFVSYPTKSEMETALGALNEMELEGRVIRVSLAE 267
           RG+GFV+  ++SE+  A+ AL+   L+GR +RV++AE
Sbjct: 192 RGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226

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BLAST of Sed0012538 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.6e-37
Identity = 97/263 (36.88%), Postives = 143/263 (54.37%), Query Frame = 0


Query: 31  STQMLRPILSYSLAIESPPF---RAWRPVLGISAAVVQGEAAVTNGFEEGVAEETAVDGG 90
           S  +L P LS+ L  +S  F     W       A+      A+T+ FE  V E+   D  
Sbjct: 27  SVSLLSPSLSFKLNSDSVSFSIAAKWNS----PASRFARNVAITSEFE--VEEDGFADVA 86

Query: 91  SPVDFGSSTTTKLYFGNLPYSVDSSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMS 150
            P +   S   KL+ GNLP++VDS+QLA + +  G  E++EV+YD+ TG+SRGF FVTMS
Sbjct: 87  PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 146

Query: 151 SVEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLY---PETEY--------------- 210
           SV +     +  +G    GR LRVN    P  +E  +   P + +               
Sbjct: 147 SVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGA 206

Query: 211 ----KLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVSYPTKSEMET 269
               +++VGNLSW V   +L   F E G VV ARVIY+ ++G+S+G+GFV+Y +  E++ 
Sbjct: 207 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 266

[Close]

BLAST of Sed0012538 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 8.0e-37
Identity = 86/212 (40.57%), Postives = 126/212 (59.43%), Query Frame = 0


Query: 66  GEAAVTNGFEE-----GVAEETAVDGGSPVDFGSSTTTKLYFGNLPYSVDSSQLAAIVQD 125
           GE     GF E     G ++E   D             KL+ GNLPY VDS  LA + + 
Sbjct: 99  GEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQ 158

Query: 126 HGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNFS----DK 185
            GV E+ EV+Y+R+T +SRGF FVTMS+VE+  K +E  +     GR+L VN +    ++
Sbjct: 159 AGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGER 218

Query: 186 PKPKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVS 245
           P+ + P   E  Y+++VGN+ W +    L Q F E+G VV ARV+Y+ ETG+SRG+GFV+
Sbjct: 219 PE-RPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVT 278

Query: 246 YPTKSEMETALGALNEMELEGRVIRVSLAEGK 269
             +++EM  A+  L+   L+GR IRV++AE +
Sbjct: 279 MASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309

[Close]

BLAST of Sed0012538 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.8e-36
Identity = 95/261 (36.40%), Postives = 146/261 (55.94%), Query Frame = 0


Query: 27  ITTPSTQMLRPILSYSLAIESPPFRAWRPVLGIS--AAVVQGEAAVTNGFEEGVA----- 86
           ++T +T     I S  L    P    +R  + +S  A+V  G   V    EE VA     
Sbjct: 36  LSTYNTHFNFKINSTKLKAHFPISSLYRSSIFLSTCASVSDGVEVVQEDDEEEVALSAEE 95

Query: 87  EETAVDGGSPVDFGSSTTTKLYFGNLPYSVDSSQLAAIVQDHGVAELIEVLYDRNTGKSR 146
           EE   +    V+  S    +LY GNLP+S+ SSQL+ I  + G    +E++YDR T +SR
Sbjct: 96  EEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSR 155

Query: 147 GFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNFSDKPKPKE------------PLYPET 206
           GFAFVTM SVE+  + I   DG+   GR ++VNF + P+  E              + ++
Sbjct: 156 GFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDS 215

Query: 207 EYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVSYPTKSEMETAL 266
            +KL+V NLSW++TS+ L  AF +    + A+VIY+  +G+SRG+GF+++ +   M +AL
Sbjct: 216 PHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSAL 275

Query: 267 GALNEMELEGRVIRVSLAEGK 269
             +NE+ELEGR +R+++A  K
Sbjct: 276 DTMNEVELEGRPLRLNVAGQK 296

[Close]

BLAST of Sed0012538 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-35
Identity = 76/175 (43.43%), Postives = 110/175 (62.86%), Query Frame = 0


Query: 95  STTTKLYFGNLPYSVDSSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNK 154
           S   KL+ GNLPY +DS  LA + Q  GV E+ EV+Y+R T +SRGF FVTMS+VE+ +K
Sbjct: 94  SEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADK 153

Query: 155 VIENLDGTAYMGRILRVNFSDKPKPKEPLYPET---EYKLFVGNLSWSVTSESLAQAFQE 214
            +E        GR+L VN +     +    P T    Y+++VGN+ W +    L Q F E
Sbjct: 154 AVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSE 213

Query: 215 YGNVVGARVIYNGETGQSRGYGFVSYPTKSEMETALGALNEMELEGRVIRVSLAE 267
           +G VV ARV+++ E+G+SRG+GFV+  +++EM  A+  L+   L+GR IRV+ AE
Sbjct: 214 HGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268

[Close]

BLAST of Sed0012538 vs. ExPASy TrEMBL
Match: A0A0A0L496 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134590 PE=4 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 1.8e-116
Identity = 230/276 (83.33%), Postives = 244/276 (88.41%), Query Frame = 0


Query: 2   AAAAGAS-FKTPIRGSRSNHRLSDSLITTPSTQMLRPILSYSLAIESPPFRA----WRPV 61
           AAA GAS F T +RGSRS H LSDSL+ TPSTQ+L PILS SLAIESP  RA    WRPV
Sbjct: 5   AAATGASFFATSLRGSRSKHWLSDSLLATPSTQVL-PILSRSLAIESPLLRASSEKWRPV 64

Query: 62  LGISAAVVQGEAAVTNGFEEGVAEETAVDGGSPVDFGSSTTTKLYFGNLPYSVDSSQLAA 121
           + ISAAVVQGE AVT G EEGV EET V+GGSPV+ GS   TKLYFGNLPYSVDSSQLAA
Sbjct: 65  MIISAAVVQGETAVTVGVEEGVEEETEVEGGSPVESGS---TKLYFGNLPYSVDSSQLAA 124

Query: 122 IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNFSDK 181
           IVQD+G+AELIEVLYDRNTGKSRGFAFVTMSS+EDCNKVIENLDG+AYMGRILRVNFSDK
Sbjct: 125 IVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGSAYMGRILRVNFSDK 184

Query: 182 PKPKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVS 241
           PKPKEPLYPETEYKLFVGNLSWSVTSE L QAFQEYGNVVGARVIY+GETG+SRGYGFVS
Sbjct: 185 PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGFVS 244

Query: 242 YPTKSEMETALGALNEMELEGRVIRVSLAEGKQVQG 273
           Y TKSEMETAL  +NE+ELEGRVIRVSLAEGKQ  G
Sbjct: 245 YSTKSEMETALETINELELEGRVIRVSLAEGKQAHG 276

[Close]

BLAST of Sed0012538 vs. ExPASy TrEMBL
Match: A0A1S4DSH7 (LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC103483544 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 8.9e-116
Identity = 229/266 (86.09%), Postives = 237/266 (89.10%), Query Frame = 0


Query: 2   AAAAGAS-FKTPIRGSRSNHRLSDSLITTPSTQMLRPILSYSLAIESPPFRA----WRPV 61
           AAA GAS F TP+RGSRS H  SDSL+ TPSTQ+L PILS SL IESPP RA    WRPV
Sbjct: 5   AAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVL-PILSRSLTIESPPLRASSERWRPV 64

Query: 62  LGISAAVVQGEAAVTNGFEEGVAEETAVDGGSPVDFGSSTTTKLYFGNLPYSVDSSQLAA 121
           L ISAAVVQGE AV  G EEGV EETAV+GGSPV+ GS   TKLYFGNLPYSVDSSQLAA
Sbjct: 65  LIISAAVVQGETAVMVGVEEGVEEETAVEGGSPVESGS---TKLYFGNLPYSVDSSQLAA 124

Query: 122 IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNFSDK 181
           IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSS+EDCNKVIENLDGTAYMGRILRVNFSDK
Sbjct: 125 IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDK 184

Query: 182 PKPKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVS 241
           PKPKEPLYPETEYKLFVGNLSWSVTSE L QAFQEYGNVVGARVIYNGETG+SRGYGFVS
Sbjct: 185 PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRGYGFVS 244

Query: 242 YPTKSEMETALGALNEMELEGRVIRV 263
           Y TKSEMETAL ALNE+ELEGRVIRV
Sbjct: 245 YSTKSEMETALEALNEVELEGRVIRV 266

[Close]

BLAST of Sed0012538 vs. ExPASy TrEMBL
Match: A0A5D3CZH4 (Putative G3BP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002080 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.3e-111
Identity = 221/257 (85.99%), Postives = 229/257 (89.11%), Query Frame = 0


Query: 2   AAAAGAS-FKTPIRGSRSNHRLSDSLITTPSTQMLRPILSYSLAIESPPFRA----WRPV 61
           AAA GAS F TP+RGSRS H  SDSL+ TPSTQ+L PILS SL IESPP RA    WRPV
Sbjct: 5   AAATGASFFTTPLRGSRSKHWFSDSLLATPSTQVL-PILSRSLTIESPPLRASSERWRPV 64

Query: 62  LGISAAVVQGEAAVTNGFEEGVAEETAVDGGSPVDFGSSTTTKLYFGNLPYSVDSSQLAA 121
           L ISAAVVQGE AVT G EEGV EETAV+GGSPV+ GS   TKLYFGNLPYSVDSSQLAA
Sbjct: 65  LIISAAVVQGETAVTVGVEEGVEEETAVEGGSPVESGS---TKLYFGNLPYSVDSSQLAA 124

Query: 122 IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNFSDK 181
           IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSS+EDCNKVIENLDGTAYMGRILRVNFSDK
Sbjct: 125 IVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDK 184

Query: 182 PKPKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVS 241
           PKPKEPLYPETEYKLFVGNLSWSVTSE L QAFQEYGNVVGARVIYNGETG+SRGYGFVS
Sbjct: 185 PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYNGETGKSRGYGFVS 244

Query: 242 YPTKSEMETALGALNEM 254
           Y TKSEMETAL ALNE+
Sbjct: 245 YSTKSEMETALEALNEV 257

[Close]

BLAST of Sed0012538 vs. ExPASy TrEMBL
Match: A0A6J1DUT6 (28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024570 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 1.9e-110
Identity = 223/282 (79.08%), Postives = 236/282 (83.69%), Query Frame = 0


Query: 2   AAAAGASFKT---PIRGSRSNHRLSDSLITTPSTQMLRPILSYSLAIESPPFRA----WR 61
           AA  G+SF       +G RS H LSDSL+  PSTQML P+LS  LA+ES   RA    WR
Sbjct: 5   AATVGSSFTASTHSFKGLRSKHWLSDSLLAMPSTQML-PVLSRYLALESASLRAFSEKWR 64

Query: 62  PVLGISAAVVQGEAAVTNGFEEGVAEE----TAVDGGSPVDFGSSTTTKLYFGNLPYSVD 121
           PVLGISAAVVQGE AVT   EEGVAEE     AV GGSPV+ GS   TKLYFGNLPYSVD
Sbjct: 65  PVLGISAAVVQGEPAVTADAEEGVAEEKGGGEAVGGGSPVEAGS---TKLYFGNLPYSVD 124

Query: 122 SSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILR 181
           SSQLA IVQ+HGV ELIEVLYDRNTGKSRGFAFVTMSS+EDCN+VIENLDG+AYMGR+LR
Sbjct: 125 SSQLAGIVQEHGVPELIEVLYDRNTGKSRGFAFVTMSSIEDCNRVIENLDGSAYMGRVLR 184

Query: 182 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSR 241
           VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESL QAFQEYGNVVGARVIYNGETG+SR
Sbjct: 185 VNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGRSR 244

Query: 242 GYGFVSYPTKSEMETALGALNEMELEGRVIRVSLAEGKQVQG 273
           GYGFVSY TK EME AL ALNE+ELEGRVIRVSLAEGKQ QG
Sbjct: 245 GYGFVSYSTKPEMEKALEALNEVELEGRVIRVSLAEGKQAQG 282

[Close]

BLAST of Sed0012538 vs. ExPASy TrEMBL
Match: A0A6J1FA65 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443680 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 6.4e-106
Identity = 219/283 (77.39%), Postives = 235/283 (83.04%), Query Frame = 0


Query: 1   MAAAAGASFKTPIRGSRSNHRLSDSLITTPSTQMLRPILSYSLAIESPPFRA----WRPV 60
           MA AAGAS  T  R       LSD+L+TTPS  M  PILS SLAIES P RA    WRP 
Sbjct: 13  MATAAGASLFTTKRW------LSDALLTTPSALMF-PILSRSLAIESAPLRAFSERWRPA 72

Query: 61  LGISAAVVQGEAAVTNGFEEGVAEET-------AVDGGSPVDFGSSTTTKLYFGNLPYSV 120
           LGISAAVVQ +AAVT G EEGVA+ET       AVDGGSPV+ G    TKLYFGNLPYSV
Sbjct: 73  LGISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGK---TKLYFGNLPYSV 132

Query: 121 DSSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRIL 180
           DSSQLA IVQD+GVAELIEVLYDRNTGKSRGFAFVTMSS+EDCNKVIENLDGTAYMGR+L
Sbjct: 133 DSSQLADIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLL 192

Query: 181 RVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQS 240
           RVNFSDKPKPK  LYP++EY+L+V NLSWSVTSESLAQAFQEYGNVVGARVIY+ ETG+S
Sbjct: 193 RVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKS 252

Query: 241 RGYGFVSYPTKSEMETALGALNEMELEGRVIRVSLAEGKQVQG 273
           RGYGFVSY TKSEMETAL A NE+ELEGRVIRVSLA+GKQ QG
Sbjct: 253 RGYGFVSYSTKSEMETALEACNELELEGRVIRVSLAQGKQAQG 285

[Close]

BLAST of Sed0012538 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 265.8 bits (678), Expect = 3.9e-71
Identity = 133/192 (69.27%), Postives = 164/192 (85.42%), Query Frame = 0


Query: 80  EETAVDGGSPV-DFGSSTTTKLYFGNLPYSVDSSQLAAIVQDHGVAELIEVLYDRNTGKS 139
           EE   DG S V D  ++  TKLYFGNLPY+VDS+ LA I+QD    EL+EVLY+R+TG+S
Sbjct: 66  EEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQS 125

Query: 140 RGFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNFSDKPKP-KEPLYPETEYKLFVGNLS 199
           RGFAFVTMS+VEDCN +I+NLDGT Y+GR L+VNF+DKPKP KEPLYPETE+KLFVGNLS
Sbjct: 126 RGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLS 185

Query: 200 WSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVSYPTKSEMETALGALNEMELEG 259
           W+VTSESLA AF+E G+VVGARV+++G+TG+SRGYGFV Y +K+EMETAL +L+  ELEG
Sbjct: 186 WTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEG 245

Query: 260 RVIRVSLAEGKQ 270
           R IRV+LA+GK+
Sbjct: 246 RAIRVNLAQGKK 257

[Close]

BLAST of Sed0012538 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 156.8 bits (395), Expect = 2.5e-38
Identity = 97/263 (36.88%), Postives = 143/263 (54.37%), Query Frame = 0


Query: 31  STQMLRPILSYSLAIESPPF---RAWRPVLGISAAVVQGEAAVTNGFEEGVAEETAVDGG 90
           S  +L P LS+ L  +S  F     W       A+      A+T+ FE  V E+   D  
Sbjct: 27  SVSLLSPSLSFKLNSDSVSFSIAAKWNS----PASRFARNVAITSEFE--VEEDGFADVA 86

Query: 91  SPVDFGSSTTTKLYFGNLPYSVDSSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMS 150
            P +   S   KL+ GNLP++VDS+QLA + +  G  E++EV+YD+ TG+SRGF FVTMS
Sbjct: 87  PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMS 146

Query: 151 SVEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLY---PETEY--------------- 210
           SV +     +  +G    GR LRVN    P  +E  +   P + +               
Sbjct: 147 SVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGA 206

Query: 211 ----KLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVSYPTKSEMET 269
               +++VGNLSW V   +L   F E G VV ARVIY+ ++G+S+G+GFV+Y +  E++ 
Sbjct: 207 GSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQN 266

[Close]

BLAST of Sed0012538 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 150.2 bits (378), Expect = 2.4e-36
Identity = 96/268 (35.82%), Postives = 148/268 (55.22%), Query Frame = 0


Query: 16  SRSNHRLSDSLITTPSTQMLRPILSYSLAIESPPFRAWRPVLGISAAVVQGEAAVTNGFE 75
           S  +HR + SL + P        ++ +L+++S   R        S+ VV   +  +N  E
Sbjct: 34  SSESHRFNFSLSSRP--------VNLTLSLKSKTLRN-------SSPVVTFVSQTSNWAE 93

Query: 76  EGVAEETAVDGGSPVDFGSS-------------TTTKLYFGNLPYSVDSSQLAAIVQDHG 135
           E   E+ ++ GG+ V    S                KL+ GNLPY VDS  LA + +  G
Sbjct: 94  EEEGEDGSI-GGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAG 153

Query: 136 VAELIEVLYDRNTGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNFS----DKPK 195
             E+ EV+Y+R+T +SRGF FVTMS+VE+  K +E  +     GR L VN +     +P+
Sbjct: 154 TVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPE 213

Query: 196 PKEPLYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVSYP 255
            ++P   +  ++++VGNL W V S  L + F E+G VV ARV+ + ETG+SRG+GFV   
Sbjct: 214 -RQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMS 273

Query: 256 TKSEMETALGALNEMELEGRVIRVSLAE 267
            ++E+  A+ AL+   LEGR I+V++AE
Sbjct: 274 NENEVNVAIAALDGQNLEGRAIKVNVAE 284

[Close]

BLAST of Sed0012538 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-35
Identity = 73/207 (35.27%), Postives = 124/207 (59.90%), Query Frame = 0


Query: 75  EEGVAEETAVDGGSPVDFGSSTTTKLYFGNLPYSVDSSQLAAIVQDHGVAELIEVLYDRN 134
           EEG   E  V+        S    +LY GNLPY++ SS+L+ I  + G    ++++YD+ 
Sbjct: 93  EEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKV 152

Query: 135 TGKSRGFAFVTMSSVEDCNKVIENLDGTAYMGRILRVNFSDKPKPKE------------P 194
           T +SRGF FVTM S+E+  + ++  + +   GR ++VNF + P+  E             
Sbjct: 153 TDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNR 212

Query: 195 LYPETEYKLFVGNLSWSVTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVSYPTKSE 254
            Y ++ +K++ GNL W++TS+ L  AF +   V+GA+VIY   TG+SRG+GF+S+ +   
Sbjct: 213 SYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEN 272

Query: 255 METALGALNEMELEGRVIRVSLAEGKQ 270
           +++AL  +N +E+EGR +R++LA  ++
Sbjct: 273 VQSALATMNGVEVEGRALRLNLASERE 299

[Close]

BLAST of Sed0012538 vs. TAIR 10
Match: AT3G52150.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-35
Identity = 74/186 (39.78%), Postives = 114/186 (61.29%), Query Frame = 0


Query: 90  VDFGSSTTTKLYFGNLPYSVDSSQLAAIVQDHGVAELIEVLYDRNTGKSRGFAFVTMSSV 149
           +D  S    ++Y GN+P +V + QL  +V++HG  E ++V+YD+ +G+SR F F TM SV
Sbjct: 68  LDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSV 127

Query: 150 EDCNKVIENLDGTAYMGRILRVNFSDKPKPKEP----------LYPETEYKLFVGNLSWS 209
           ED N V+E L+G    GR ++VN ++KP    P           + ++ YK++VGNL+ +
Sbjct: 128 EDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKT 187

Query: 210 VTSESLAQAFQEYGNVVGARVIYNGETGQSRGYGFVSYPTKSEMETALGALNEMELEGRV 266
           VT E L   F E G VV A+V     T +S G+GFV++ ++ ++E A+ ALN   LEG+ 
Sbjct: 188 VTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQK 247

The following BLAST results are available for this feature:

BLAST of Sed0012538 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134038.1	3.7e-116	83.33	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN56810.1 hypothetic...	[more]
XP_016898952.1	1.8e-115	86.09	PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo]	[more]
KAA0049207.1	2.8e-111	85.99	putative G3BP-like protein [Cucumis melo var. makuwa] >TYK17351.1 putative G3BP-...	[more]
XP_022157973.1	4.0e-110	79.08	28 kDa ribonucleoprotein, chloroplastic [Momordica charantia]	[more]
KAG6597332.1	1.3e-105	77.39	Nuclear transport factor 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Sed0012538 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P28644	1.1e-38	43.32	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
Q9ZUU4	3.6e-37	36.88	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]
P19683	8.0e-37	40.57	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19684	6.8e-36	36.40	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19682	1.2e-35	43.43	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]

BLAST of Sed0012538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L496	1.8e-116	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134590 PE=4 SV=1	[more]
A0A1S4DSH7	8.9e-116	86.09	LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3CZH4	1.3e-111	85.99	Putative G3BP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1DUT6	1.9e-110	79.08	28 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1FA65	6.4e-106	77.39	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Sed0012538 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G60000.1	3.9e-71	69.27	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37220.1	2.5e-38	36.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G50250.1	2.4e-36	35.82	chloroplast RNA-binding protein 31B	[more]
AT3G52380.1	1.5e-35	35.27	chloroplast RNA-binding protein 33	[more]
AT3G52150.1	2.6e-35	39.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 190..263 e-value: 1.0E-25 score: 101.4 coord: 99..172 e-value: 1.4E-20 score: 84.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 100..169 e-value: 2.4E-14 score: 52.9 coord: 191..261 e-value: 1.1E-21 score: 76.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 189..267 score: 19.484827
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 98..176 score: 16.790073
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 179..272 e-value: 3.6E-27 score: 97.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 71..178 e-value: 2.0E-23 score: 85.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 180..269
None	No IPR available	PANTHER	PTHR15241:SF321	31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 134..174 coord: 78..137 coord: 180..269
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 134..174 coord: 78..137
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 182..269
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 92..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012538.1	Sed0012538.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding