Sed0012532 (gene) Chayote v1

Overview


Name	Sed0012532
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L23
Location	LG07: 18236379 .. 18238539 (+)
RNA-Seq Expression	Sed0012532
Synteny	Sed0012532

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGCAGACTCGGAAGAAGAGTCGTTCACTTCGCAAATCTTCCGATCAAGCTCCTGATGCCAACTTCCGTCACCAACATCACTGAAATCGCTCTCAAAACCATCCCCTCAGCTTCCAAGATCGAAATCAAGCGCGTCCTCGAGAGCCTCTACGGATTTGAGGTCGACAAAGTTCGGACTCTCAACATGGAGGGGAAGAAGAAGAAGCGCGGCGGCCTTCTGGTCGCAAAGCCCGATTACAAGAAGGCCTACGTCACTCTCAGGAATTCCTTGTCCATTTCTCCGGACCTGTACCCCATCCGGATCATAGAGGAGGAGAAGAGGAATAAGAACAAGCAGACCAAGGCCAGCATCCTTGAGGAGGGAGAGGCCAAGAGGCATTGGATGCACCAGAGGGAGCCCCCTGCATTCAAACCTTACAAAGGTTTTGCGAATCAAAGCCGCCGACGGACTGCCGGCGGTGAAGCTGTGGAATCATCGACTAAGTTCCCTTGGAGTAGCATGAGATCTGGCAGCAGGTAAGTTGAAGGATTGAATCCCTGTTATTTCGTAATTAGGATTTGTTTTGTTTTTTTTTTCTAGACGATCATAGTGCAATGAGTGGATGACTCTTTGAGCTTAATGATGAATGTTTGATTTTCGAATTATGAAATGAACTCCTGTTTGCTCACTGTGGATGTTCTGTTTTGTTGCTTAAATCAATAAAGAAATTAGAGTTGTATTTGTTTTATTCCCATGTATTGTGTAGATTCTACTGGCATAACTCAAGAATGTGTTCTAGGTTCACTTTCAAATATTCGATTGCAATATTGTGGTTACGATGAACTTAATCATGCCACCACATGCTGTATGCAAAGTTGAATGCATAGAACTAATTGTTTTGATAAAGTTCATTATAGTTCTTGTTCTTGGTGAAAGATATTCATATGAACAGAAATAGTGAAAGAGATTGCCTATTCTCATATTCATATACTTCAGGTCACTGGTAACCTTTGCCATAAGCTCATTCGAGAACCAGTCCGGCGGGTTCTTGATGGGTAGATTCAATGAGAGATTCAATTGATACCAATGTTATAAAAGGAAAGATAAATCATAGTTACAAAAAGGGAGAGCCTATGACTCCATGATAAACCCTGCATGAATGGTAGATTCAATGAGAGGTTCAAGAGAATGGTGAGTGTTGTTGAAAATCCTGGTATTTCTCTCAAGCCACCACTTCCAAAAGAATGCATAAGAAGCATCAGCTCTTGTGTGGAAGGAATTTTTTTTATCTTCTTCCAACCAAATCCCCAACCTGTAAACATCAGCTCTCTTGTTGCAGCTCTGAGTAGTCAGTTTGCAACTCTGCCTATGTGCCCTTACCCTCTCAAAGCCTTGAGGTTTTTAATCCCTGTCTGTTGATAAATGATTTCCATCTTGATCTGAATTATCACTTCACTCCTAGGTGCTTTCTCCTTCACTTGCATCCTCGACTTCATCTTCAATTGCTCTGAAAACGGAATCTGCACAATTCACTCATAAGTATTGTGATGAACTTTAAATTATTGACCAACTACTTATTTGTCCTAATTTCCAAGAGTTAAGACTATTTATTGACTGAGATGGACATTGCTATTTGTTTTTAGTATTGTTAGATAGTTGTGCATTGTGCAAAAAATTTCAAAGTTAGTTGTGTAGATGGTCTTCTGATACTGGCCTACCACTACTGCTTCTGTCTCTGTAAATTGAAATGATGTAGGATTCTGATAAGGCCCTGGCTACCATTTTTATTTATATCACCAAAAGCAGAACAAGATGTCTATTTCATGATGCTGAATAGCTCCCAATTGTCATTCTCAAAGTAGCTGCAGGATTGCACTGCAACAGCAGGTCTTCCAACATGTCTAGAGGTATCAGAAATTGTTGAATGCTTGGTCCGACCACTTTGCCACTTCTCGAACGATTAATGTCACGGTGAGTCTTGAACTTTAGACCTTGAAAGAAGTCTATCTTCAAAACTCAAGTCTTCAACCACTGTGCCACTTCTCGAGGACTATTGGCCACTCAAAGGAGAAGAAAGATCTTTTGTGTATGCCTTCTTTTGGATATGATGGATAGAACATAATGGCAGGGTTTTCAATGACCCAACACACTCCTTTCAAGGAGCATTGGAATCGAC

mRNA sequence

ATGGGAAGCAGACTCGGAAGAAGAGTCGTTCACTTCGCAAATCTTCCGATCAAGCTCCTGATGCCAACTTCCGTCACCAACATCACTGAAATCGCTCTCAAAACCATCCCCTCAGCTTCCAAGATCGAAATCAAGCGCGTCCTCGAGAGCCTCTACGGATTTGAGGTCGACAAAGTTCGGACTCTCAACATGGAGGGGAAGAAGAAGAAGCGCGGCGGCCTTCTGGTCGCAAAGCCCGATTACAAGAAGGCCTACGTCACTCTCAGGAATTCCTTGTCCATTTCTCCGGACCTGTACCCCATCCGGATCATAGAGGAGGAGAAGAGGAATAAGAACAAGCAGACCAAGGCCAGCATCCTTGAGGAGGGAGAGGCCAAGAGGCATTGGATGCACCAGAGGGAGCCCCCTGCATTCAAACCTTACAAAGGTTTTGCGAATCAAAGCCGCCGACGGACTGCCGGCGGTGAAGCTGTGGAATCATCGACTAAGTTCCCTTGGAGTAGCATGAGATCTGGCAGCAGCTGCAGGATTGCACTGCAACAGCAGGTCTTCCAACATGTCTAGAGGTATCAGAAATTGTTGAATGCTTGGTCCGACCACTTTGCCACTTCTCGAACGATTAATGTCACGGTGAGTCTTGAACTTTAGACCTTGAAAGAAGTCTATCTTCAAAACTCAAGTCTTCAACCACTGTGCCACTTCTCGAGGACTATTGGCCACTCAAAGGAGAAGAAAGATCTTTTGTGTATGCCTTCTTTTGGATATGATGGATAGAACATAATGGCAGGGTTTTCAATGACCCAACACACTCCTTTCAAGGAGCATTGGAATCGAC

Coding sequence (CDS)

ATGGGAAGCAGACTCGGAAGAAGAGTCGTTCACTTCGCAAATCTTCCGATCAAGCTCCTGATGCCAACTTCCGTCACCAACATCACTGAAATCGCTCTCAAAACCATCCCCTCAGCTTCCAAGATCGAAATCAAGCGCGTCCTCGAGAGCCTCTACGGATTTGAGGTCGACAAAGTTCGGACTCTCAACATGGAGGGGAAGAAGAAGAAGCGCGGCGGCCTTCTGGTCGCAAAGCCCGATTACAAGAAGGCCTACGTCACTCTCAGGAATTCCTTGTCCATTTCTCCGGACCTGTACCCCATCCGGATCATAGAGGAGGAGAAGAGGAATAAGAACAAGCAGACCAAGGCCAGCATCCTTGAGGAGGGAGAGGCCAAGAGGCATTGGATGCACCAGAGGGAGCCCCCTGCATTCAAACCTTACAAAGGTTTTGCGAATCAAAGCCGCCGACGGACTGCCGGCGGTGAAGCTGTGGAATCATCGACTAAGTTCCCTTGGAGTAGCATGAGATCTGGCAGCAGCTGCAGGATTGCACTGCAACAGCAGGTCTTCCAACATGTCTAG

Protein sequence

MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRNKNKQTKASILEEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSGSSCRIALQQQVFQHV

Homology

[Close]

BLAST of Sed0012532 vs. NCBI nr
Match: XP_022985025.1 (uncharacterized protein LOC111483116 [Cucurbita maxima])

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-76
Identity = 149/172 (86.63%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRNKNKQTKASIL 120
           TLNM+GKKKKRGGLL+AKPDYKKAYVTLRNSLSISPD+YPIRIIEE+KRN NKQ+K+SI+
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG 173
           EEGEAKRHW+H++EP  FK YKGF+++SRRRT   E VE STKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSDRSRRRTGSAETVEPSTKFPWSSMRSG 172

[Close]

BLAST of Sed0012532 vs. NCBI nr
Match: XP_022929525.1 (uncharacterized protein LOC111436066 [Cucurbita moschata] >KAG6577300.1 hypothetical protein SDJN03_24874, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 295.0 bits (754), Expect = 4.4e-76
Identity = 147/172 (85.47%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRNKNKQTKASIL 120
           TLNM+GKKKKRGGLL+AKPDYKKAYVTLRN LSISPD+YPIRIIEE+KRN NKQ+K+SI+
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG 173
           EEGEAKRHW+H++EP  FK YKGF+N+ RRRT   E VE STKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSG 172

[Close]

BLAST of Sed0012532 vs. NCBI nr
Match: KAG7015390.1 (rplW, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.7 bits (748), Expect = 2.2e-75
Identity = 146/171 (85.38%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRNKNKQTKASIL 120
           TLNM+GKKKKRGGLL+AKPDYKKAYVTLRN LSISPD+YPIRIIEE+KRN NKQ+K+SI+
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRS 172
           EEGEAKRHW+H++EP  FK YKGF+N+ RRRT   E VE STKFPWSSMRS
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRS 171

[Close]

BLAST of Sed0012532 vs. NCBI nr
Match: XP_023552749.1 (uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo] >XP_023552752.1 uncharacterized protein LOC111810293 [Cucurbita pepo subsp. pepo] >XP_023553074.1 uncharacterized protein LOC111810580 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.7 bits (748), Expect = 2.2e-75
Identity = 146/172 (84.88%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRNKNKQTKASIL 120
           TLNM+GKKKKRGGLL+AKPDYKKAYVTLRN LSISPD+YPIRIIEE+KRN NKQ+K SI+
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKFSIV 120

Query: 121 EEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG 173
           EEGEAKRHW+H++EP  FK YKGFAN+ RR+T   E +E STKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEPVEFKSYKGFANRGRRQTGSAETIEPSTKFPWSSMRSG 172

[Close]

BLAST of Sed0012532 vs. NCBI nr
Match: XP_023531609.1 (uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo] >KAG6600654.1 hypothetical protein SDJN03_05887, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031291.1 rplW, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 290.8 bits (743), Expect = 8.3e-75
Identity = 147/172 (85.47%), Postives = 159/172 (92.44%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRNKNKQTKASIL 120
           TLNM+GKKKKRGGLL+AKPDYKKAYVTLRN LSISPD+YPIRIIEE+KRN NKQ+K+SI+
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG 173
           EEGEAKRHW+H++E    K YKGFA++ RRR  G EAVE STKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSG 172

[Close]

BLAST of Sed0012532 vs. ExPASy Swiss-Prot
Match: Q605B4 (50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) OX=243233 GN=rplW PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.9e-07
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLR 89
          +   +  P+ASK++IK  +E ++G +VD VR LN++GK K+ G  +  + D+KKAYV L+
Sbjct: 28 QFVFRVKPAASKLQIKSAVELMFGVKVDSVRILNVKGKSKRFGRFMGQRSDWKKAYVKLK 87

Query: 90 NSLSI 95
              I
Sbjct: 88 PGFDI 92

[Close]

BLAST of Sed0012532 vs. ExPASy Swiss-Prot
Match: Q0I161 (50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.0e-06
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 26 TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDY 85
          TN TE    I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+
Sbjct: 21 TNNTEKSNTIVFKVALDANKVEIANAVEQLFEVKVDSVRTVVVKGKTKRRGAKMGQRSDW 80

Query: 86 KKAYVTLRNSLSI 95
          KKAYVTL+   S+
Sbjct: 81 KKAYVTLQEGQSL 93

[Close]

BLAST of Sed0012532 vs. ExPASy Swiss-Prot
Match: P55839 (50S ribosomal protein L23 OS=Aggregatibacter actinomycetemcomitans OX=714 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-06
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLRN 90
          I  K    A+K+EI   +E L+  +VD VRT+ ++GK K+RG  +  + D+KKAYVTL+ 
Sbjct: 29 IVFKVALDANKVEITNAVEQLFEVKVDSVRTVVVKGKTKRRGAKIGRRSDWKKAYVTLQE 88

Query: 91 SLSI 95
            S+
Sbjct: 89 GQSL 92

[Close]

BLAST of Sed0012532 vs. ExPASy Swiss-Prot
Match: Q0ABH3 (50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) OX=187272 GN=rplW PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.7e-06
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0


Query: 30 EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLR 89
          E+  K    A K EI++ +E L+  +V  VRT+ M+GK+K+ G L   +PD+KKAYVTL 
Sbjct: 28 EVVFKVAVDARKAEIRQAVEQLFDVKVRDVRTVKMKGKRKRFGRLEGKRPDWKKAYVTLE 87

Query: 90 NSLSI 95
              I
Sbjct: 88 EGNEI 92

[Close]

BLAST of Sed0012532 vs. ExPASy Swiss-Prot
Match: A0KF23 (50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=rplW PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-06
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0


Query: 31 IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMEGKKKKRGGLLVAKPDYKKAYVTLR 90
          I  K    A+K E+K  +  L+  EV+ VRTLNM+GK K+ G  +  + D+KKAYVTL+
Sbjct: 30 IVFKVAVDATKAEVKAAVAKLFEVEVETVRTLNMKGKTKRAGARVGRRSDWKKAYVTLK 88

[Close]

BLAST of Sed0012532 vs. ExPASy TrEMBL
Match: A0A6J1JA70 (uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.6e-77
Identity = 149/172 (86.63%), Postives = 162/172 (94.19%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRNKNKQTKASIL 120
           TLNM+GKKKKRGGLL+AKPDYKKAYVTLRNSLSISPD+YPIRIIEE+KRN NKQ+K+SI+
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNSLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG 173
           EEGEAKRHW+H++EP  FK YKGF+++SRRRT   E VE STKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSDRSRRRTGSAETVEPSTKFPWSSMRSG 172

[Close]

BLAST of Sed0012532 vs. ExPASy TrEMBL
Match: A0A6J1EUM4 (uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC111436066 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.1e-76
Identity = 147/172 (85.47%), Postives = 160/172 (93.02%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRV+HFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MGSRLGRRVIHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRNKNKQTKASIL 120
           TLNM+GKKKKRGGLL+AKPDYKKAYVTLRN LSISPD+YPIRIIEE+KRN NKQ+K+SI+
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG 173
           EEGEAKRHW+H++EP  FK YKGF+N+ RRRT   E VE STKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEPVGFKAYKGFSNRDRRRTGSAETVEPSTKFPWSSMRSG 172

[Close]

BLAST of Sed0012532 vs. ExPASy TrEMBL
Match: A0A0A0L0J2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.5e-74
Identity = 146/173 (84.39%), Postives = 161/173 (93.06%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+
Sbjct: 1   MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60

Query: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRNKNKQTKASIL 120
           TLNMEGKKKKRGG+L+AKPDYKKAYVTLRN LSISPD+YPIRIIEE+KRN NKQ+K+SI+
Sbjct: 61  TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGG-EAVESSTKFPWSSMRSG 173
           EEGEAK+HW+H++EP   K YKGFA++ RRR+ GG E VE STKFPWSSMRSG
Sbjct: 121 EEGEAKKHWLHEKEPVGIKTYKGFADRGRRRSGGGAETVEPSTKFPWSSMRSG 173

[Close]

BLAST of Sed0012532 vs. ExPASy TrEMBL
Match: A0A6J1FSK6 (uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC111448049 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.5e-74
Identity = 146/172 (84.88%), Postives = 158/172 (91.86%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           M SRLGRRVVHFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR
Sbjct: 1   MVSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60

Query: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRNKNKQTKASIL 120
           TLNM+GKKKKRGGLL+AKPDYKKAYVTLRN LSISPD+YPIRIIEE+KRN NKQ+K+SI+
Sbjct: 61  TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRNMNKQSKSSIV 120

Query: 121 EEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGGEAVESSTKFPWSSMRSG 173
           EEGEAKRHW+H++E    K YKGFA++ RRR  G EAVE STKFPWSSMRSG
Sbjct: 121 EEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSG 172

[Close]

BLAST of Sed0012532 vs. ExPASy TrEMBL
Match: A0A5D3CZJ7 (Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00540 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 7.6e-74
Identity = 146/173 (84.39%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLGRRVVHFANLPIKLLMPTS TNITEIALKTIPSASKIEIKRVLESLYGF+VDKVR
Sbjct: 76  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFQVDKVR 135

Query: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRNKNKQTKASIL 120
           TLNMEGKKKKRGG+L+AKPDYKKAYVTLRN LSIS D+YPIRIIEE+KRN NKQ+K+SI+
Sbjct: 136 TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISQDMYPIRIIEEDKRNMNKQSKSSIV 195

Query: 121 EEGEAKRHWMHQREPPAFKPYKGFANQSRRRTAGG-EAVESSTKFPWSSMRSG 173
           EEGEAKRHW+H++EP   K YKGFA++ RRR  GG E VE STKFPWSSMRSG
Sbjct: 196 EEGEAKRHWLHEKEPVGIKTYKGFADRGRRRIGGGAETVEPSTKFPWSSMRSG 248

[Close]

BLAST of Sed0012532 vs. TAIR 10
Match: AT4G39880.1 (Ribosomal protein L23/L15e family protein )

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-51
Identity = 110/175 (62.86%), Postives = 133/175 (76.00%), Query Frame = 0


Query: 1   MGSRLGRRVVHFANLPIKLLMPTSVTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVR 60
           MGSRLG RVVHFANLPIKLLMP  +TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV 
Sbjct: 1   MGSRLGGRVVHFANLPIKLLMPAKLTNIHEFALKTIPSASKIEIKRVLESLYGFDVEKVN 60

Query: 61  TLNMEGKKKKRGGLLVAKPDYKKAYVTLRNSLSISPDLYPIRIIEEEKRNKNKQTKASIL 120
           TLNM+GKKKKRGGLL+AK DYKKAYVTLR+ LSIS DL+P++ IEE++++K K + + + 
Sbjct: 61  TLNMDGKKKKRGGLLIAKADYKKAYVTLRSPLSISRDLFPVKYIEEDRKSKVKGS-SFVE 120

Query: 121 EEGEAKRHWMHQREPPAFKPY-KGFANQSRRR----TAGGEAVESSTKFPWSSMR 171
           EE + K HW+ ++E      Y KG   +   R    T GG A   + KFPWS+MR
Sbjct: 121 EEDDKKSHWLDRKEKREIGGYGKGKGRRGGERANSPTRGGAAAAGTAKFPWSNMR 174

The following BLAST results are available for this feature:

BLAST of Sed0012532 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985025.1	1.2e-76	86.63	uncharacterized protein LOC111483116 [Cucurbita maxima]	[more]
XP_022929525.1	4.4e-76	85.47	uncharacterized protein LOC111436066 [Cucurbita moschata] >KAG6577300.1 hypothet...	[more]
KAG7015390.1	2.2e-75	85.38	rplW, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023552749.1	2.2e-75	84.88	uncharacterized protein LOC111810290 [Cucurbita pepo subsp. pepo] >XP_023552752....	[more]
XP_023531609.1	8.3e-75	85.47	uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo] >KAG6600654.1 ...	[more]

BLAST of Sed0012532 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q605B4	5.9e-07	40.00	50S ribosomal protein L23 OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB...	[more]
Q0I161	1.0e-06	42.47	50S ribosomal protein L23 OS=Haemophilus somnus (strain 129Pt) OX=205914 GN=rplW...	[more]
P55839	1.7e-06	42.19	50S ribosomal protein L23 OS=Aggregatibacter actinomycetemcomitans OX=714 GN=rpl...	[more]
Q0ABH3	1.7e-06	43.08	50S ribosomal protein L23 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / D...	[more]
A0KF23	2.2e-06	45.76	50S ribosomal protein L23 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC...	[more]

BLAST of Sed0012532 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JA70	5.6e-77	86.63	uncharacterized protein LOC111483116 OS=Cucurbita maxima OX=3661 GN=LOC111483116...	[more]
A0A6J1EUM4	2.1e-76	85.47	uncharacterized protein LOC111436066 OS=Cucurbita moschata OX=3662 GN=LOC1114360...	[more]
A0A0A0L0J2	1.5e-74	84.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G095560 PE=3 SV=1	[more]
A0A6J1FSK6	4.5e-74	84.88	uncharacterized protein LOC111448049 OS=Cucurbita moschata OX=3662 GN=LOC1114480...	[more]
A0A5D3CZJ7	7.6e-74	84.39	Nucleotide-binding, alpha-beta plait OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Sed0012532 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39880.1	1.4e-51	62.86	Ribosomal protein L23/L15e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..138 e-value: 1.3E-23 score: 85.8
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 29..91 e-value: 1.2E-15 score: 57.6
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR12059	RIBOSOMAL PROTEIN L23-RELATED	coord: 5..172
None	No IPR available	PANTHER	PTHR12059:SF7	BNAC07G51330D PROTEIN	coord: 5..172
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 26..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012532.1	Sed0012532.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:1903857	negative regulation of cytokinin dehydrogenase activity
biological_process	GO:1903070	negative regulation of ER-associated ubiquitin-dependent protein catabolic process
biological_process	GO:0010584	pollen exine formation
biological_process	GO:1902183	regulation of shoot apical meristem development
biological_process	GO:0015789	UDP-N-acetylgalactosamine transmembrane transport
biological_process	GO:1990569	UDP-N-acetylglucosamine transmembrane transport
biological_process	GO:0006412	translation
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005463	UDP-N-acetylgalactosamine transmembrane transporter activity