Sed0012511 (gene) Chayote v1

Overview


Name	Sed0012511
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Avr9/Cf-9 rapidly elicited protein
Location	LG05: 4809240 .. 4809777 (-)
RNA-Seq Expression	Sed0012511
Synteny	Sed0012511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGTCACTTCAAGAAACCGCTCGGAATTTCGAAACCAGAACAAACAAGGAAACTCGCACTTTCCACAACCCATTATAAATCCCCGAAATTCTCTCCATCAAATTCATCACCAATCCAACAATCAAGAACAGCAAAAACTTCAACACAAAGAGTAGAATCCAATCGAAGAAGAAGAAGATGAATTCCATGTTCAGTTTGTTCGATGCCTTCGCCGCCGAACAGATCCTCGGCAGATTCTTTACGGCTTCTACTTCTTTGCCGCCGCCGTCCTTCACTCCCAACCACGGCGCCGCCGCCGCCGATTCTCTGAAATCGCCGCTGCCGAGCAAGAAAGACGAAGCGAAACCTAAGTCAACGAAGTGTTCGTCGATGAGGCCGAGATTTGCTTTGGAGTTTGATGGAATCAATTGCTTTGAGACTATTGTTCCGAATTGATGTCTGAATCTCGTTTTCTGTTTATTACTATATTCTTTTCATTCTTTCAATTTTAGGTTTATGTGTTAGGTTTTACAAGATCTTGATCAATACAGAGTAATT

mRNA sequence

TTAGTCACTTCAAGAAACCGCTCGGAATTTCGAAACCAGAACAAACAAGGAAACTCGCACTTTCCACAACCCATTATAAATCCCCGAAATTCTCTCCATCAAATTCATCACCAATCCAACAATCAAGAACAGCAAAAACTTCAACACAAAGAGTAGAATCCAATCGAAGAAGAAGAAGATGAATTCCATGTTCAGTTTGTTCGATGCCTTCGCCGCCGAACAGATCCTCGGCAGATTCTTTACGGCTTCTACTTCTTTGCCGCCGCCGTCCTTCACTCCCAACCACGGCGCCGCCGCCGCCGATTCTCTGAAATCGCCGCTGCCGAGCAAGAAAGACGAAGCGAAACCTAAGTCAACGAAGTGTTCGTCGATGAGGCCGAGATTTGCTTTGGAGTTTGATGGAATCAATTGCTTTGAGACTATTGTTCCGAATTGATGTCTGAATCTCGTTTTCTGTTTATTACTATATTCTTTTCATTCTTTCAATTTTAGGTTTATGTGTTAGGTTTTACAAGATCTTGATCAATACAGAGTAATT

Coding sequence (CDS)

ATGAATTCCATGTTCAGTTTGTTCGATGCCTTCGCCGCCGAACAGATCCTCGGCAGATTCTTTACGGCTTCTACTTCTTTGCCGCCGCCGTCCTTCACTCCCAACCACGGCGCCGCCGCCGCCGATTCTCTGAAATCGCCGCTGCCGAGCAAGAAAGACGAAGCGAAACCTAAGTCAACGAAGTGTTCGTCGATGAGGCCGAGATTTGCTTTGGAGTTTGATGGAATCAATTGCTTTGAGACTATTGTTCCGAATTGA

Protein sequence

MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFTPNHGAAAADSLKSPLPSKKDEAKPKSTKCSSMRPRFALEFDGINCFETIVPN

Homology

[Close]

BLAST of Sed0012511 vs. NCBI nr
Match: XP_023522684.1 (uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.1 bits (240), Expect = 8.0e-17
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFTPN--HGAAAADSLKSPLPSKKDEAKP- 60
          MNSMFS FDAFAAE ++G+F TASTS+  PSFTPN   G +A+ +    +P KKDEA   
Sbjct: 1  MNSMFSFFDAFAAEILIGKFVTASTSV--PSFTPNTGGGGSASSAPVKSMPGKKDEANAV 60

Query: 61 KSTKCSSMRPRFALEFDGINCFETIVPN 86
            +K SSM+PRFALE DG+NCFET+VPN
Sbjct: 61 AKSKNSSMKPRFALELDGLNCFETLVPN 86

[Close]

BLAST of Sed0012511 vs. NCBI nr
Match: XP_011654674.1 (uncharacterized protein LOC105435432 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 56/85 (65.88%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFTPNHGAAAADSLKSPLPSKKDEAKPKST 60
          MNSMFSLFDAFAAE +LG F  AS+S+  PSFTPN+   A+ ++  PLPSKK+E +PKS 
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSV--PSFTPNNN-NASPAVPKPLPSKKEE-EPKS- 60

Query: 61 KCSSMRPRFALEFDGINCFETIVPN 86
          K S M+PRFALE DG+NCFET+VPN
Sbjct: 61 KNSLMKPRFALELDGLNCFETLVPN 80

[Close]

BLAST of Sed0012511 vs. NCBI nr
Match: KAG6579594.1 (hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 6.8e-16
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 1   MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFTPN--HGAAAADSLKSPLPSKKDEAKP- 60
           MNSMFS FDAFAAE +LG+F TASTS+  PSFTPN   G +A+ +    +P KK+EA   
Sbjct: 81  MNSMFSFFDAFAAEILLGKFVTASTSV--PSFTPNTGGGGSASSAPVKSMPGKKEEANAV 140

Query: 61  KSTKCSSMRPRFALEFDGINCFETIVPN 86
             +K S M+PRFALE DG+NCFET+VPN
Sbjct: 141 AKSKNSLMKPRFALELDGLNCFETLVPN 166

[Close]

BLAST of Sed0012511 vs. NCBI nr
Match: XP_022929066.1 (uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothetical protein SDJN02_22166, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 6.8e-16
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFTPN--HGAAAADSLKSPLPSKKDEAKP- 60
          MNSMFS FDAFAAE +LG+F TASTS+  PSFTPN   G +A+ +    +P KK+EA   
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSV--PSFTPNTGGGGSASSAPVKSMPGKKEEANAV 60

Query: 61 KSTKCSSMRPRFALEFDGINCFETIVPN 86
            +K S M+PRFALE DG+NCFET+VPN
Sbjct: 61 AKSKNSLMKPRFALELDGLNCFETLVPN 86

[Close]

BLAST of Sed0012511 vs. NCBI nr
Match: KAA0042638.1 (uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK06039.1 uncharacterized protein E5676_scaffold376G001400 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-15
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILG-RFFTASTSLPPPSFTP--NHGAAAADSLKSPLPS-KKDEAK 60
          MNSMFSLFDAFAAE +LG  F  AS+S+  PSFTP  N+  AA+ ++  PLPS KK+E K
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSI--PSFTPNNNNNNAASSAVPKPLPSKKKEEPK 60

Query: 61 PKSTKCSSMRPRFALEFDGINCFETIVPN 86
          PK+   SS++PRFALE DG+NCFET+VPN
Sbjct: 61 PKN---SSVKPRFALELDGLNCFETLVPN 84

[Close]

BLAST of Sed0012511 vs. ExPASy TrEMBL
Match: A0A0A0KJT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.1e-17
Identity = 56/85 (65.88%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFTPNHGAAAADSLKSPLPSKKDEAKPKST 60
          MNSMFSLFDAFAAE +LG F  AS+S+  PSFTPN+   A+ ++  PLPSKK+E +PKS 
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSV--PSFTPNNN-NASPAVPKPLPSKKEE-EPKS- 60

Query: 61 KCSSMRPRFALEFDGINCFETIVPN 86
          K S M+PRFALE DG+NCFET+VPN
Sbjct: 61 KNSLMKPRFALELDGLNCFETLVPN 80

[Close]

BLAST of Sed0012511 vs. ExPASy TrEMBL
Match: A0A6J1EM23 (uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC111435766 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.3e-16
Identity = 53/88 (60.23%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFTPN--HGAAAADSLKSPLPSKKDEAKP- 60
          MNSMFS FDAFAAE +LG+F TASTS+  PSFTPN   G +A+ +    +P KK+EA   
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSV--PSFTPNTGGGGSASSAPVKSMPGKKEEANAV 60

Query: 61 KSTKCSSMRPRFALEFDGINCFETIVPN 86
            +K S M+PRFALE DG+NCFET+VPN
Sbjct: 61 AKSKNSLMKPRFALELDGLNCFETLVPN 86

[Close]

BLAST of Sed0012511 vs. ExPASy TrEMBL
Match: A0A5D3C6N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001400 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.6e-16
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILG-RFFTASTSLPPPSFTP--NHGAAAADSLKSPLPS-KKDEAK 60
          MNSMFSLFDAFAAE +LG  F  AS+S+  PSFTP  N+  AA+ ++  PLPS KK+E K
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSI--PSFTPNNNNNNAASSAVPKPLPSKKKEEPK 60

Query: 61 PKSTKCSSMRPRFALEFDGINCFETIVPN 86
          PK+   SS++PRFALE DG+NCFET+VPN
Sbjct: 61 PKN---SSVKPRFALELDGLNCFETLVPN 84

[Close]

BLAST of Sed0012511 vs. ExPASy TrEMBL
Match: A0A6J1E0L6 (uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026066 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-09
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFTPNHGAAAADSLKSPLPSKKDE--AKPK 60
          MNSMFSLFDAFAAE ++ + F AS+     SF PN+G+    S+KSP  +   +   +PK
Sbjct: 1  MNSMFSLFDAFAAELLMAKTFRASS-----SFAPNNGSGG--SVKSPPSNAAPDNLEQPK 60

Query: 61 STKCSSMR-PRFALEFDGINCFETIV 84
          S K S +R PR A EFDG+NCFET+V
Sbjct: 61 SNKNSLLRPPRLAPEFDGLNCFETLV 79

[Close]

BLAST of Sed0012511 vs. ExPASy TrEMBL
Match: A0A6J0M7G2 (uncharacterized protein LOC108839994 OS=Raphanus sativus OX=3726 GN=LOC108839994 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFTPNHGAAAADSLKSPLPSKKDEAKPKST 60
          MNSMFS FDA  AE I+G+  TA++ +  PS   N  ++A  +  S L  KKDE   K+T
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASFICNPS-ERNPSSSAGQTASSSL--KKDE---KAT 60

Query: 61 KCSSMRPRFALEFDGINCFETIV 84
            ++ +PR ALE DGI+CFETIV
Sbjct: 61 NLAAKQPRCALELDGIHCFETIV 76

[Close]

BLAST of Sed0012511 vs. TAIR 10
Match: AT1G32928.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 6.6e-09
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAEQILGRFFTASTSLPPPSFTPNHGAAAADSLKSPLPSKKDEAKPKST 60
          MNSMFS FDA  AE I+G+  TA++ +          +++     + L  KKDE   K+ 
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYRSERNSASSSSSVGGQNASLSLKKDEKASKNM 60

Query: 61 KCSSMRPRFALEFDGINCFETIV 84
             +  PRFALE DG++CFETIV
Sbjct: 61 DLPTKTPRFALELDGLHCFETIV 82

[Close]

BLAST of Sed0012511 vs. TAIR 10
Match: AT1G32920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32928.1); Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 1.8e-06
Identity = 34/87 (39.08%), Postives = 42/87 (48.28%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAE----QILGRFFTASTSLPPPSFTPNHGAAAADSLKSPLPSKKDEAK 60
          MNSMFS FDA  AE     ++   FTA+T+   P+  P                +K  A 
Sbjct: 1  MNSMFSAFDALFAEVMGKNLMASSFTATTATTKPAAAP-----------QTQTQEKANAS 60

Query: 61 PKSTKCSSMRPRFALEFDGINCFETIV 84
           K        PRFALE DG++CFETIV
Sbjct: 61 SKKIGLVQKIPRFALELDGLHCFETIV 76

The following BLAST results are available for this feature:

BLAST of Sed0012511 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023522684.1	8.0e-17	61.36	uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo]	[more]
XP_011654674.1	1.0e-16	65.88	uncharacterized protein LOC105435432 [Cucumis sativus]	[more]
KAG6579594.1	6.8e-16	60.23	hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022929066.1	6.8e-16	60.23	uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothet...	[more]
KAA0042638.1	1.2e-15	62.92	uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK0...	[more]

BLAST of Sed0012511 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0012511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJT8	5.1e-17	65.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1	[more]
A0A6J1EM23	3.3e-16	60.23	uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC1114357...	[more]
A0A5D3C6N3	5.6e-16	62.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1E0L6	2.3e-09	52.33	uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]
A0A6J0M7G2	1.2e-05	49.40	uncharacterized protein LOC108839994 OS=Raphanus sativus OX=3726 GN=LOC108839994...	[more]

BLAST of Sed0012511 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32928.1	6.6e-09	42.17	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G32920.1	1.8e-06	39.08	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..61
None	No IPR available	PANTHER	PTHR33641	OS06G0133500 PROTEIN	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012511.1	Sed0012511.1	mRNA