Sed0012480 (gene) Chayote v1

Overview
NameSed0012480
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG11: 21774928 .. 21775635 (+)
RNA-Seq ExpressionSed0012480
SyntenySed0012480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAAGATAAACCAAGAGATTTGAAGATGAAAGGCAAAGTGAAAGAAGAACAAGATGAGCCAAAGAACTCGAAGATTAAAAAAATGGCACAAGAACTCAAGATACCAACAGTTCCACCAGGCTTTCTATTCCAACCACCCAGATCAGTAAGCCCTTTGCCAAAGAAAACTAAACAACAATCATCATCGGTATCGATATCGAAAAGAAGCGGAAAAAGAGCTATTGAAGTGGTTGATCATCAGACGCCTTCAAGCGTCCTGGATTCGACACTGAAACTAGCCGAGGAAATCGTCGGGGTGTACGGTAAGTACATCGATCACGTAATTGAAATGGGGAGAGATAGATTCAAAGATGAAAAGAATTGGCGGTTTGATTCAACTCTGTGCGAAGGCCTGGCTAATGCTTGTGTAGAGAAAGTCCAGAGGGTGAGAGATGAATTAGAAGGAATGAAGAAAGATTTGAATTATTCCAAAGTTGGTGAAATTGTGGATCAACTGGGAAACATTCATGAGTCTTTTCATCGCTCTCCCAATATCAACGCTTCTGCAATGCCAAACTGCACAAAGCAACAGCTGATATCATGTGAGAATGAGCTTCAGCATATCAAGAATCAGCTTCATGGCATAACTTCTCGGATTCGCCAACTCAAAACCAAGAAGAAACCCGTCGCCACAAAACACAAGAATTTGAGAATTGGAAATTAA

mRNA sequence

ATGGATAAAGATAAACCAAGAGATTTGAAGATGAAAGGCAAAGTGAAAGAAGAACAAGATGAGCCAAAGAACTCGAAGATTAAAAAAATGGCACAAGAACTCAAGATACCAACAGTTCCACCAGGCTTTCTATTCCAACCACCCAGATCAGTAAGCCCTTTGCCAAAGAAAACTAAACAACAATCATCATCGGTATCGATATCGAAAAGAAGCGGAAAAAGAGCTATTGAAGTGGTTGATCATCAGACGCCTTCAAGCGTCCTGGATTCGACACTGAAACTAGCCGAGGAAATCGTCGGGGTGTACGGTAAGTACATCGATCACGTAATTGAAATGGGGAGAGATAGATTCAAAGATGAAAAGAATTGGCGGTTTGATTCAACTCTGTGCGAAGGCCTGGCTAATGCTTGTGTAGAGAAAGTCCAGAGGGTGAGAGATGAATTAGAAGGAATGAAGAAAGATTTGAATTATTCCAAAGTTGGTGAAATTGTGGATCAACTGGGAAACATTCATGAGTCTTTTCATCGCTCTCCCAATATCAACGCTTCTGCAATGCCAAACTGCACAAAGCAACAGCTGATATCATGTGAGAATGAGCTTCAGCATATCAAGAATCAGCTTCATGGCATAACTTCTCGGATTCGCCAACTCAAAACCAAGAAGAAACCCGTCGCCACAAAACACAAGAATTTGAGAATTGGAAATTAA

Coding sequence (CDS)

ATGGATAAAGATAAACCAAGAGATTTGAAGATGAAAGGCAAAGTGAAAGAAGAACAAGATGAGCCAAAGAACTCGAAGATTAAAAAAATGGCACAAGAACTCAAGATACCAACAGTTCCACCAGGCTTTCTATTCCAACCACCCAGATCAGTAAGCCCTTTGCCAAAGAAAACTAAACAACAATCATCATCGGTATCGATATCGAAAAGAAGCGGAAAAAGAGCTATTGAAGTGGTTGATCATCAGACGCCTTCAAGCGTCCTGGATTCGACACTGAAACTAGCCGAGGAAATCGTCGGGGTGTACGGTAAGTACATCGATCACGTAATTGAAATGGGGAGAGATAGATTCAAAGATGAAAAGAATTGGCGGTTTGATTCAACTCTGTGCGAAGGCCTGGCTAATGCTTGTGTAGAGAAAGTCCAGAGGGTGAGAGATGAATTAGAAGGAATGAAGAAAGATTTGAATTATTCCAAAGTTGGTGAAATTGTGGATCAACTGGGAAACATTCATGAGTCTTTTCATCGCTCTCCCAATATCAACGCTTCTGCAATGCCAAACTGCACAAAGCAACAGCTGATATCATGTGAGAATGAGCTTCAGCATATCAAGAATCAGCTTCATGGCATAACTTCTCGGATTCGCCAACTCAAAACCAAGAAGAAACCCGTCGCCACAAAACACAAGAATTTGAGAATTGGAAATTAA

Protein sequence

MDKDKPRDLKMKGKVKEEQDEPKNSKIKKMAQELKIPTVPPGFLFQPPRSVSPLPKKTKQQSSSVSISKRSGKRAIEVVDHQTPSSVLDSTLKLAEEIVGVYGKYIDHVIEMGRDRFKDEKNWRFDSTLCEGLANACVEKVQRVRDELEGMKKDLNYSKVGEIVDQLGNIHESFHRSPNINASAMPNCTKQQLISCENELQHIKNQLHGITSRIRQLKTKKKPVATKHKNLRIGN
Homology
BLAST of Sed0012480 vs. NCBI nr
Match: KAA0053662.1 (hypothetical protein E6C27_scaffold135G00340 [Cucumis melo var. makuwa] >TYK00832.1 hypothetical protein E5676_scaffold1545G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-26
Identity = 75/183 (40.98%), Postives = 110/183 (60.11%), Query Frame = 0

Query: 56  KKTKQQSSSVSISKRSGKRAIEVVDHQTPSSVLDSTLKLAEEIVGVYGKYIDHVIEMGRD 115
           + +K++ SS++ S      + E++D  + SS     +KL EEIV +Y  YI+HV +M +D
Sbjct: 78  ESSKRKRSSITNS------SPELIDLNSDSSSNSEPVKLIEEIVKIYSDYIEHVFQMAKD 137

Query: 116 RFKDEKNWRFDSTLCEGLANACVEKVQRVRDELEGMKKDLNYSK--VGEIVDQLGNIHES 175
           RF DE+ W FD   C  LA    +KVQR+  EL+ MKKD N  K  V +I +QL  +HE 
Sbjct: 138 RFNDEQRWNFDKNKCSDLAQVFSQKVQRLGIELKEMKKDPNQIKPCVLQITNQLEKMHER 197

Query: 176 FHRSPNINASAMPNCTKQQLISCENELQHIKNQLHGITSRIRQLKT---KKKPVATKHKN 234
           F  S NI AS+M  C + +LI C NE+  ++ +L+GI  RI ++KT   K K +  + +N
Sbjct: 198 FDSSQNIRASSMRECRRDELILCINEIDEMRRELYGIICRIEEVKTLEMKNKTMEIRQRN 254

BLAST of Sed0012480 vs. NCBI nr
Match: KAG6594502.1 (hypothetical protein SDJN03_11055, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.1 bits (318), Expect = 2.0e-25
Identity = 87/239 (36.40%), Postives = 126/239 (52.72%), Query Frame = 0

Query: 2   DKDKPRDLKMKGKVKEEQDEPKNSKIKKMAQELKIPTVPPGFLFQPPRSVSPLPKKTKQQ 61
           D D+ +D + K K+ ++   P      +M + L+I  V    +F  P  +    +  +++
Sbjct: 55  DDDQQKDSRKKQKLVDDFQSPYPQ--FRMERPLRIAGVEEIKMFNVPPEIRGRFEVRERE 114

Query: 62  SSSVSISKRSGKRAIEVVDHQTPSS-------------VLDSTLKLAEEIVGVYGKYIDH 121
             +   SKR+  R+ EV+  +  SS              +   L L EEIV VY KYIDH
Sbjct: 115 EYTEESSKRARTRSPEVIRLRADSSSEAFSMEAVKSGEKMAEPLTLMEEIVSVYSKYIDH 174

Query: 122 VIEMGRDRFKDEKNWRFDSTLCEGLANACVEKVQRVRDELEGMKKDLNYSK--------V 181
           ++ M R+RF DE  W F    C GLA   ++ +Q +  EL  MK DL+  K        +
Sbjct: 175 ILLMARNRFNDENRWNFGRNECGGLAEIFLKNIQSLGSELARMKNDLSQMKNYFIIAPRI 234

Query: 182 GEIVDQLGNIHESFHRSPNINASAMPNCTKQQLISCENELQHIKNQLHGITSRIRQLKT 220
            +I++QL  +HESF RSPNI ASA PNCTKQ+LI+C  EL   K QL+ I+S +  LKT
Sbjct: 235 RQIMNQLETMHESFDRSPNITASAKPNCTKQELIACMEELNQFKKQLYEISSGVCGLKT 291

BLAST of Sed0012480 vs. NCBI nr
Match: KGN59675.1 (hypothetical protein Csa_002140 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-24
Identity = 71/169 (42.01%), Postives = 100/169 (59.17%), Query Frame = 0

Query: 76  IEVVDHQTPSSVLDSTLKLAEEIVGVYGKYIDHVIEMGRDRFKDEKNWRFDSTLCEGLAN 135
           +E++D  + SS     +KL EEIV +Y  YI+HV +M +DRF DE+ W FD T C  LA 
Sbjct: 118 LELIDLNSDSS-SSEPVKLIEEIVKIYSDYIEHVFQMMKDRFNDEQRWNFDKTKCSDLAE 177

Query: 136 ACVEKVQRVRDELEGMKKDLNY--------SKVGEIVDQLGNIHESFHRSPNINASAMPN 195
             V+K++R+  EL  MKKD N          +V +I +QL  +H+ F  S NI ASA   
Sbjct: 178 IFVQKMKRLGIELIEMKKDPNQRENYRVIKPRVLQITNQLEKMHDRFDSSQNIRASAKRA 237

Query: 196 CTKQQLISCENELQHIKNQLHGITSRIRQLKT---KKKPVATKHKNLRI 234
           CT+ +LI C NE+  +  +L+GIT RI +LK    K K +  + +NLRI
Sbjct: 238 CTRNELILCINEIDEMMKELYGITLRIEELKALEMKNKTMEIRQRNLRI 285

BLAST of Sed0012480 vs. NCBI nr
Match: XP_023518166.1 (uncharacterized protein LOC111781710 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-23
Identity = 82/226 (36.28%), Postives = 120/226 (53.10%), Query Frame = 0

Query: 2   DKDKPRDLKMKGKVKEEQDEPKNSKIKKMAQELKIPTVPPGFLFQPPRSVSPLPKKTKQQ 61
           + D+ +D + K K+ ++   P      +M + L+I  V    +F  P  +    +  +++
Sbjct: 55  EDDQQKDSRKKQKLVDDFQSPYPQ--FRMERPLRIAGVEEIKMFNVPPEIRGRFEVRERE 114

Query: 62  SSSVSISKRSGKRAIEVVDHQTPSS-------------VLDSTLKLAEEIVGVYGKYIDH 121
             +   SKR+  R+ EV+  +  SS              +   LKL EEIV VY KYIDH
Sbjct: 115 EYTEESSKRARTRSPEVIRLRADSSSEAFSMEAVKLEEKMAEPLKLMEEIVSVYSKYIDH 174

Query: 122 VIEMGRDRFKDEKNWRFDSTLCEGLANACVEKVQRVRDELEGMKKDLNYSK--------V 181
           ++ M R+RFKDE  W F    C GLA   ++ +Q +  EL  MK DL+  K        +
Sbjct: 175 ILLMARNRFKDEDKWNFGRNECGGLAEIFLKNIQTLGSELVRMKNDLSQMKNYFIIAPRI 234

Query: 182 GEIVDQLGNIHESFHRSPNINASAMPNCTKQQLISCENELQHIKNQ 207
            +I++QL  +HESF RSPNI+ASA PNCTKQ+LI+C  EL   K Q
Sbjct: 235 RQIMNQLETMHESFDRSPNISASAKPNCTKQELIACMEELNQFKKQ 278

BLAST of Sed0012480 vs. NCBI nr
Match: KAG6594503.1 (hypothetical protein SDJN03_11056, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 2.5e-04
Identity = 61/214 (28.50%), Postives = 98/214 (45.79%), Query Frame = 0

Query: 17  EEQDEPKNSKIKKMAQE--LKIPTVPPGFLFQPPRSVSPLPKKTKQQSSSVSISKRSGKR 76
           +E ++PK  ++++  +E  L I  V     F   +      KK  +   +   + R GK 
Sbjct: 81  KELEDPKMKEVERRKKEGRLIIKDVEDDGSFDRKKQ-----KKENKNLFNEFSTSRKGKE 140

Query: 77  AIEVVDHQTPSSVLDSTLKLAEEIVGVYGKYIDHVIEMGRDRFKDEKNWRFDSTLCEG-- 136
            I       P  + D  + L    +G +  YI H++EM  +R +   NW   S L EG  
Sbjct: 141 KI-----HEPEIIFDPLVLLRCITLG-FSVYIGHLMEMAIERRRGAPNW--ISQLEEGAD 200

Query: 137 LANACVEKVQRVRDELEGM--KKDL--NYSKVGEIVDQLGNIHESFHRSPNINASAMPNC 196
           L +  + KVQ + DE+  +  +KDL   Y K   I+ QL  I +    SPNI   +  +C
Sbjct: 201 LLDGVIRKVQIMNDEMRRIRRRKDLREEYVKFHTILTQLDEIDQHMEASPNIGIVSEKDC 260

Query: 197 TKQQLISCENELQHIKNQLHGITSRIRQLKTKKK 223
           T  +L  CE+EL+  KN    + S + +L  + K
Sbjct: 261 TDLELRVCEHELKCCKNGADELVSEVLKLMKESK 281

BLAST of Sed0012480 vs. ExPASy TrEMBL
Match: A0A5A7UD05 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00340 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.1e-27
Identity = 75/183 (40.98%), Postives = 110/183 (60.11%), Query Frame = 0

Query: 56  KKTKQQSSSVSISKRSGKRAIEVVDHQTPSSVLDSTLKLAEEIVGVYGKYIDHVIEMGRD 115
           + +K++ SS++ S      + E++D  + SS     +KL EEIV +Y  YI+HV +M +D
Sbjct: 78  ESSKRKRSSITNS------SPELIDLNSDSSSNSEPVKLIEEIVKIYSDYIEHVFQMAKD 137

Query: 116 RFKDEKNWRFDSTLCEGLANACVEKVQRVRDELEGMKKDLNYSK--VGEIVDQLGNIHES 175
           RF DE+ W FD   C  LA    +KVQR+  EL+ MKKD N  K  V +I +QL  +HE 
Sbjct: 138 RFNDEQRWNFDKNKCSDLAQVFSQKVQRLGIELKEMKKDPNQIKPCVLQITNQLEKMHER 197

Query: 176 FHRSPNINASAMPNCTKQQLISCENELQHIKNQLHGITSRIRQLKT---KKKPVATKHKN 234
           F  S NI AS+M  C + +LI C NE+  ++ +L+GI  RI ++KT   K K +  + +N
Sbjct: 198 FDSSQNIRASSMRECRRDELILCINEIDEMRRELYGIICRIEEVKTLEMKNKTMEIRQRN 254

BLAST of Sed0012480 vs. ExPASy TrEMBL
Match: A0A0A0LCD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G837560 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.2e-25
Identity = 71/169 (42.01%), Postives = 100/169 (59.17%), Query Frame = 0

Query: 76  IEVVDHQTPSSVLDSTLKLAEEIVGVYGKYIDHVIEMGRDRFKDEKNWRFDSTLCEGLAN 135
           +E++D  + SS     +KL EEIV +Y  YI+HV +M +DRF DE+ W FD T C  LA 
Sbjct: 118 LELIDLNSDSS-SSEPVKLIEEIVKIYSDYIEHVFQMMKDRFNDEQRWNFDKTKCSDLAE 177

Query: 136 ACVEKVQRVRDELEGMKKDLNY--------SKVGEIVDQLGNIHESFHRSPNINASAMPN 195
             V+K++R+  EL  MKKD N          +V +I +QL  +H+ F  S NI ASA   
Sbjct: 178 IFVQKMKRLGIELIEMKKDPNQRENYRVIKPRVLQITNQLEKMHDRFDSSQNIRASAKRA 237

Query: 196 CTKQQLISCENELQHIKNQLHGITSRIRQLKT---KKKPVATKHKNLRI 234
           CT+ +LI C NE+  +  +L+GIT RI +LK    K K +  + +NLRI
Sbjct: 238 CTRNELILCINEIDEMMKELYGITLRIEELKALEMKNKTMEIRQRNLRI 285

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0053662.11.1e-2640.98hypothetical protein E6C27_scaffold135G00340 [Cucumis melo var. makuwa] >TYK0083... [more]
KAG6594502.12.0e-2536.40hypothetical protein SDJN03_11055, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN59675.11.7e-2442.01hypothetical protein Csa_002140 [Cucumis sativus][more]
XP_023518166.11.9e-2336.28uncharacterized protein LOC111781710 [Cucurbita pepo subsp. pepo][more]
KAG6594503.12.5e-0428.50hypothetical protein SDJN03_11056, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UD055.1e-2740.98Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LCD38.2e-2542.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G837560 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 134..154
NoneNo IPR availableCOILSCoilCoilcoord: 200..220
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0012480.1Sed0012480.1mRNA