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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGATAAAGATAAACCAAGAGATTTGAAGATGAAAGGCAAAGTGAAAGAAGAACAAGATGAGCCAAAGAACTCGAAGATTAAAAAAATGGCACAAGAACTCAAGATACCAACAGTTCCACCAGGCTTTCTATTCCAACCACCCAGATCAGTAAGCCCTTTGCCAAAGAAAACTAAACAACAATCATCATCGGTATCGATATCGAAAAGAAGCGGAAAAAGAGCTATTGAAGTGGTTGATCATCAGACGCCTTCAAGCGTCCTGGATTCGACACTGAAACTAGCCGAGGAAATCGTCGGGGTGTACGGTAAGTACATCGATCACGTAATTGAAATGGGGAGAGATAGATTCAAAGATGAAAAGAATTGGCGGTTTGATTCAACTCTGTGCGAAGGCCTGGCTAATGCTTGTGTAGAGAAAGTCCAGAGGGTGAGAGATGAATTAGAAGGAATGAAGAAAGATTTGAATTATTCCAAAGTTGGTGAAATTGTGGATCAACTGGGAAACATTCATGAGTCTTTTCATCGCTCTCCCAATATCAACGCTTCTGCAATGCCAAACTGCACAAAGCAACAGCTGATATCATGTGAGAATGAGCTTCAGCATATCAAGAATCAGCTTCATGGCATAACTTCTCGGATTCGCCAACTCAAAACCAAGAAGAAACCCGTCGCCACAAAACACAAGAATTTGAGAATTGGAAATTAA mRNA sequence ATGGATAAAGATAAACCAAGAGATTTGAAGATGAAAGGCAAAGTGAAAGAAGAACAAGATGAGCCAAAGAACTCGAAGATTAAAAAAATGGCACAAGAACTCAAGATACCAACAGTTCCACCAGGCTTTCTATTCCAACCACCCAGATCAGTAAGCCCTTTGCCAAAGAAAACTAAACAACAATCATCATCGGTATCGATATCGAAAAGAAGCGGAAAAAGAGCTATTGAAGTGGTTGATCATCAGACGCCTTCAAGCGTCCTGGATTCGACACTGAAACTAGCCGAGGAAATCGTCGGGGTGTACGGTAAGTACATCGATCACGTAATTGAAATGGGGAGAGATAGATTCAAAGATGAAAAGAATTGGCGGTTTGATTCAACTCTGTGCGAAGGCCTGGCTAATGCTTGTGTAGAGAAAGTCCAGAGGGTGAGAGATGAATTAGAAGGAATGAAGAAAGATTTGAATTATTCCAAAGTTGGTGAAATTGTGGATCAACTGGGAAACATTCATGAGTCTTTTCATCGCTCTCCCAATATCAACGCTTCTGCAATGCCAAACTGCACAAAGCAACAGCTGATATCATGTGAGAATGAGCTTCAGCATATCAAGAATCAGCTTCATGGCATAACTTCTCGGATTCGCCAACTCAAAACCAAGAAGAAACCCGTCGCCACAAAACACAAGAATTTGAGAATTGGAAATTAA Coding sequence (CDS) ATGGATAAAGATAAACCAAGAGATTTGAAGATGAAAGGCAAAGTGAAAGAAGAACAAGATGAGCCAAAGAACTCGAAGATTAAAAAAATGGCACAAGAACTCAAGATACCAACAGTTCCACCAGGCTTTCTATTCCAACCACCCAGATCAGTAAGCCCTTTGCCAAAGAAAACTAAACAACAATCATCATCGGTATCGATATCGAAAAGAAGCGGAAAAAGAGCTATTGAAGTGGTTGATCATCAGACGCCTTCAAGCGTCCTGGATTCGACACTGAAACTAGCCGAGGAAATCGTCGGGGTGTACGGTAAGTACATCGATCACGTAATTGAAATGGGGAGAGATAGATTCAAAGATGAAAAGAATTGGCGGTTTGATTCAACTCTGTGCGAAGGCCTGGCTAATGCTTGTGTAGAGAAAGTCCAGAGGGTGAGAGATGAATTAGAAGGAATGAAGAAAGATTTGAATTATTCCAAAGTTGGTGAAATTGTGGATCAACTGGGAAACATTCATGAGTCTTTTCATCGCTCTCCCAATATCAACGCTTCTGCAATGCCAAACTGCACAAAGCAACAGCTGATATCATGTGAGAATGAGCTTCAGCATATCAAGAATCAGCTTCATGGCATAACTTCTCGGATTCGCCAACTCAAAACCAAGAAGAAACCCGTCGCCACAAAACACAAGAATTTGAGAATTGGAAATTAA Protein sequence MDKDKPRDLKMKGKVKEEQDEPKNSKIKKMAQELKIPTVPPGFLFQPPRSVSPLPKKTKQQSSSVSISKRSGKRAIEVVDHQTPSSVLDSTLKLAEEIVGVYGKYIDHVIEMGRDRFKDEKNWRFDSTLCEGLANACVEKVQRVRDELEGMKKDLNYSKVGEIVDQLGNIHESFHRSPNINASAMPNCTKQQLISCENELQHIKNQLHGITSRIRQLKTKKKPVATKHKNLRIGN
Homology
BLAST of Sed0012480 vs. NCBI nr
Match: KAA0053662.1 (hypothetical protein E6C27_scaffold135G00340 [Cucumis melo var. makuwa] >TYK00832.1 hypothetical protein E5676_scaffold1545G00340 [Cucumis melo var. makuwa]) HSP 1 Score: 131.3 bits (329), Expect = 1.1e-26 Identity = 75/183 (40.98%), Postives = 110/183 (60.11%), Query Frame = 0 Query: 56 KKTKQQSSSVSISKRSGKRAIEVVDHQTPSSVLDSTLKLAEEIVGVYGKYIDHVIEMGRD 115 + +K++ SS++ S + E++D + SS +KL EEIV +Y YI+HV +M +D Sbjct: 78 ESSKRKRSSITNS------SPELIDLNSDSSSNSEPVKLIEEIVKIYSDYIEHVFQMAKD 137
Query: 116 RFKDEKNWRFDSTLCEGLANACVEKVQRVRDELEGMKKDLNYSK--VGEIVDQLGNIHES 175 RF DE+ W FD C LA +KVQR+ EL+ MKKD N K V +I +QL +HE Sbjct: 138 RFNDEQRWNFDKNKCSDLAQVFSQKVQRLGIELKEMKKDPNQIKPCVLQITNQLEKMHER 197
Query: 176 FHRSPNINASAMPNCTKQQLISCENELQHIKNQLHGITSRIRQLKT---KKKPVATKHKN 234 F S NI AS+M C + +LI C NE+ ++ +L+GI RI ++KT K K + + +N Sbjct: 198 FDSSQNIRASSMRECRRDELILCINEIDEMRRELYGIICRIEEVKTLEMKNKTMEIRQRN 254
BLAST of Sed0012480 vs. NCBI nr
Match: KAG6594502.1 (hypothetical protein SDJN03_11055, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 127.1 bits (318), Expect = 2.0e-25 Identity = 87/239 (36.40%), Postives = 126/239 (52.72%), Query Frame = 0 Query: 2 DKDKPRDLKMKGKVKEEQDEPKNSKIKKMAQELKIPTVPPGFLFQPPRSVSPLPKKTKQQ 61 D D+ +D + K K+ ++ P +M + L+I V +F P + + +++ Sbjct: 55 DDDQQKDSRKKQKLVDDFQSPYPQ--FRMERPLRIAGVEEIKMFNVPPEIRGRFEVRERE 114
Query: 62 SSSVSISKRSGKRAIEVVDHQTPSS-------------VLDSTLKLAEEIVGVYGKYIDH 121 + SKR+ R+ EV+ + SS + L L EEIV VY KYIDH Sbjct: 115 EYTEESSKRARTRSPEVIRLRADSSSEAFSMEAVKSGEKMAEPLTLMEEIVSVYSKYIDH 174
Query: 122 VIEMGRDRFKDEKNWRFDSTLCEGLANACVEKVQRVRDELEGMKKDLNYSK--------V 181 ++ M R+RF DE W F C GLA ++ +Q + EL MK DL+ K + Sbjct: 175 ILLMARNRFNDENRWNFGRNECGGLAEIFLKNIQSLGSELARMKNDLSQMKNYFIIAPRI 234
Query: 182 GEIVDQLGNIHESFHRSPNINASAMPNCTKQQLISCENELQHIKNQLHGITSRIRQLKT 220 +I++QL +HESF RSPNI ASA PNCTKQ+LI+C EL K QL+ I+S + LKT Sbjct: 235 RQIMNQLETMHESFDRSPNITASAKPNCTKQELIACMEELNQFKKQLYEISSGVCGLKT 291
BLAST of Sed0012480 vs. NCBI nr
Match: KGN59675.1 (hypothetical protein Csa_002140 [Cucumis sativus]) HSP 1 Score: 124.0 bits (310), Expect = 1.7e-24 Identity = 71/169 (42.01%), Postives = 100/169 (59.17%), Query Frame = 0 Query: 76 IEVVDHQTPSSVLDSTLKLAEEIVGVYGKYIDHVIEMGRDRFKDEKNWRFDSTLCEGLAN 135 +E++D + SS +KL EEIV +Y YI+HV +M +DRF DE+ W FD T C LA Sbjct: 118 LELIDLNSDSS-SSEPVKLIEEIVKIYSDYIEHVFQMMKDRFNDEQRWNFDKTKCSDLAE 177
Query: 136 ACVEKVQRVRDELEGMKKDLNY--------SKVGEIVDQLGNIHESFHRSPNINASAMPN 195 V+K++R+ EL MKKD N +V +I +QL +H+ F S NI ASA Sbjct: 178 IFVQKMKRLGIELIEMKKDPNQRENYRVIKPRVLQITNQLEKMHDRFDSSQNIRASAKRA 237
Query: 196 CTKQQLISCENELQHIKNQLHGITSRIRQLKT---KKKPVATKHKNLRI 234 CT+ +LI C NE+ + +L+GIT RI +LK K K + + +NLRI Sbjct: 238 CTRNELILCINEIDEMMKELYGITLRIEELKALEMKNKTMEIRQRNLRI 285
BLAST of Sed0012480 vs. NCBI nr
Match: XP_023518166.1 (uncharacterized protein LOC111781710 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 120.6 bits (301), Expect = 1.9e-23 Identity = 82/226 (36.28%), Postives = 120/226 (53.10%), Query Frame = 0 Query: 2 DKDKPRDLKMKGKVKEEQDEPKNSKIKKMAQELKIPTVPPGFLFQPPRSVSPLPKKTKQQ 61 + D+ +D + K K+ ++ P +M + L+I V +F P + + +++ Sbjct: 55 EDDQQKDSRKKQKLVDDFQSPYPQ--FRMERPLRIAGVEEIKMFNVPPEIRGRFEVRERE 114
Query: 62 SSSVSISKRSGKRAIEVVDHQTPSS-------------VLDSTLKLAEEIVGVYGKYIDH 121 + SKR+ R+ EV+ + SS + LKL EEIV VY KYIDH Sbjct: 115 EYTEESSKRARTRSPEVIRLRADSSSEAFSMEAVKLEEKMAEPLKLMEEIVSVYSKYIDH 174
Query: 122 VIEMGRDRFKDEKNWRFDSTLCEGLANACVEKVQRVRDELEGMKKDLNYSK--------V 181 ++ M R+RFKDE W F C GLA ++ +Q + EL MK DL+ K + Sbjct: 175 ILLMARNRFKDEDKWNFGRNECGGLAEIFLKNIQTLGSELVRMKNDLSQMKNYFIIAPRI 234
Query: 182 GEIVDQLGNIHESFHRSPNINASAMPNCTKQQLISCENELQHIKNQ 207 +I++QL +HESF RSPNI+ASA PNCTKQ+LI+C EL K Q Sbjct: 235 RQIMNQLETMHESFDRSPNISASAKPNCTKQELIACMEELNQFKKQ 278
BLAST of Sed0012480 vs. NCBI nr
Match: KAG6594503.1 (hypothetical protein SDJN03_11056, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 57.0 bits (136), Expect = 2.5e-04 Identity = 61/214 (28.50%), Postives = 98/214 (45.79%), Query Frame = 0 Query: 17 EEQDEPKNSKIKKMAQE--LKIPTVPPGFLFQPPRSVSPLPKKTKQQSSSVSISKRSGKR 76 +E ++PK ++++ +E L I V F + KK + + + R GK Sbjct: 81 KELEDPKMKEVERRKKEGRLIIKDVEDDGSFDRKKQ-----KKENKNLFNEFSTSRKGKE 140
Query: 77 AIEVVDHQTPSSVLDSTLKLAEEIVGVYGKYIDHVIEMGRDRFKDEKNWRFDSTLCEG-- 136 I P + D + L +G + YI H++EM +R + NW S L EG Sbjct: 141 KI-----HEPEIIFDPLVLLRCITLG-FSVYIGHLMEMAIERRRGAPNW--ISQLEEGAD 200
Query: 137 LANACVEKVQRVRDELEGM--KKDL--NYSKVGEIVDQLGNIHESFHRSPNINASAMPNC 196 L + + KVQ + DE+ + +KDL Y K I+ QL I + SPNI + +C Sbjct: 201 LLDGVIRKVQIMNDEMRRIRRRKDLREEYVKFHTILTQLDEIDQHMEASPNIGIVSEKDC 260
Query: 197 TKQQLISCENELQHIKNQLHGITSRIRQLKTKKK 223 T +L CE+EL+ KN + S + +L + K Sbjct: 261 TDLELRVCEHELKCCKNGADELVSEVLKLMKESK 281
BLAST of Sed0012480 vs. ExPASy TrEMBL
Match: A0A5A7UD05 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00340 PE=4 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 5.1e-27 Identity = 75/183 (40.98%), Postives = 110/183 (60.11%), Query Frame = 0 Query: 56 KKTKQQSSSVSISKRSGKRAIEVVDHQTPSSVLDSTLKLAEEIVGVYGKYIDHVIEMGRD 115 + +K++ SS++ S + E++D + SS +KL EEIV +Y YI+HV +M +D Sbjct: 78 ESSKRKRSSITNS------SPELIDLNSDSSSNSEPVKLIEEIVKIYSDYIEHVFQMAKD 137
Query: 116 RFKDEKNWRFDSTLCEGLANACVEKVQRVRDELEGMKKDLNYSK--VGEIVDQLGNIHES 175 RF DE+ W FD C LA +KVQR+ EL+ MKKD N K V +I +QL +HE Sbjct: 138 RFNDEQRWNFDKNKCSDLAQVFSQKVQRLGIELKEMKKDPNQIKPCVLQITNQLEKMHER 197
Query: 176 FHRSPNINASAMPNCTKQQLISCENELQHIKNQLHGITSRIRQLKT---KKKPVATKHKN 234 F S NI AS+M C + +LI C NE+ ++ +L+GI RI ++KT K K + + +N Sbjct: 198 FDSSQNIRASSMRECRRDELILCINEIDEMRRELYGIICRIEEVKTLEMKNKTMEIRQRN 254
BLAST of Sed0012480 vs. ExPASy TrEMBL
Match: A0A0A0LCD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G837560 PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 8.2e-25 Identity = 71/169 (42.01%), Postives = 100/169 (59.17%), Query Frame = 0 Query: 76 IEVVDHQTPSSVLDSTLKLAEEIVGVYGKYIDHVIEMGRDRFKDEKNWRFDSTLCEGLAN 135 +E++D + SS +KL EEIV +Y YI+HV +M +DRF DE+ W FD T C LA Sbjct: 118 LELIDLNSDSS-SSEPVKLIEEIVKIYSDYIEHVFQMMKDRFNDEQRWNFDKTKCSDLAE 177
Query: 136 ACVEKVQRVRDELEGMKKDLNY--------SKVGEIVDQLGNIHESFHRSPNINASAMPN 195 V+K++R+ EL MKKD N +V +I +QL +H+ F S NI ASA Sbjct: 178 IFVQKMKRLGIELIEMKKDPNQRENYRVIKPRVLQITNQLEKMHDRFDSSQNIRASAKRA 237
Query: 196 CTKQQLISCENELQHIKNQLHGITSRIRQLKT---KKKPVATKHKNLRI 234 CT+ +LI C NE+ + +L+GIT RI +LK K K + + +NLRI Sbjct: 238 CTRNELILCINEIDEMMKELYGITLRIEELKALEMKNKTMEIRQRNLRI 285
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0053662.1 | 1.1e-26 | 40.98 | hypothetical protein E6C27_scaffold135G00340 [Cucumis melo var. makuwa] >TYK0083... | [more] |
KAG6594502.1 | 2.0e-25 | 36.40 | hypothetical protein SDJN03_11055, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KGN59675.1 | 1.7e-24 | 42.01 | hypothetical protein Csa_002140 [Cucumis sativus] | [more] |
XP_023518166.1 | 1.9e-23 | 36.28 | uncharacterized protein LOC111781710 [Cucurbita pepo subsp. pepo] | [more] |
KAG6594503.1 | 2.5e-04 | 28.50 | hypothetical protein SDJN03_11056, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UD05 | 5.1e-27 | 40.98 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0LCD3 | 8.2e-25 | 42.01 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G837560 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 134..154 |
None | No IPR available | COILS | Coil | Coil | coord: 200..220 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 38..71 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 53..70 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..26 |
Relationships
The following mRNA feature(s) are a part of this gene:
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