Sed0012469 (gene) Chayote v1

Overview
NameSed0012469
Typegene
OrganismSechium edule (Chayote v1)
DescriptionProlamin_like domain-containing protein
LocationLG09: 4504113 .. 4504514 (+)
RNA-Seq ExpressionSed0012469
SyntenySed0012469
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAGAAAACCAACACAGTGGTGACATTGATGGGGATTTTTTCATGGACAATCATTTTGGCAACCTTAGTTCCACGCTCGATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTTCGACCATGTCTGGATATGGTGAAGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGCGTCTTCGTCAAATTCATGGGAAAAAGTTGCGCCGAAGCTTTTACTTTTTCGTTTGACTTTCCGGATTTGGAAGTCTTGAAACCTAATCCCATGATGGCATATAAAACTTGTGTTAGAAGACTTGATGCTCCCCCACCTTCGAAATTTTAA

mRNA sequence

ATGACAAAGAAAACCAACACAGTGGTGACATTGATGGGGATTTTTTCATGGACAATCATTTTGGCAACCTTAGTTCCACGCTCGATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTTCGACCATGTCTGGATATGGTGAAGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGCGTCTTCGTCAAATTCATGGGAAAAAGTTGCGCCGAAGCTTTTACTTTTTCGTTTGACTTTCCGGATTTGGAAGTCTTGAAACCTAATCCCATGATGGCATATAAAACTTGTGTTAGAAGACTTGATGCTCCCCCACCTTCGAAATTTTAA

Coding sequence (CDS)

ATGACAAAGAAAACCAACACAGTGGTGACATTGATGGGGATTTTTTCATGGACAATCATTTTGGCAACCTTAGTTCCACGCTCGATGGCAGCCGACGATTACAATTCACCTATATGGAATGGATGGGTAGACGAGGATAGAGGATACACCCTTCGACCATGTCTGGATATGGTGAAGAATGCAAAATGTCAGGTGGAACTTTACAAGTACTACTTCAATATAAGTAAGAAAGAATTGGATCTAAATTGTTGCGTCTTCGTCAAATTCATGGGAAAAAGTTGCGCCGAAGCTTTTACTTTTTCGTTTGACTTTCCGGATTTGGAAGTCTTGAAACCTAATCCCATGATGGCATATAAAACTTGTGTTAGAAGACTTGATGCTCCCCCACCTTCGAAATTTTAA

Protein sequence

MTKKTNTVVTLMGIFSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFSFDFPDLEVLKPNPMMAYKTCVRRLDAPPPSKF
Homology
BLAST of Sed0012469 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 5.4e-44
Identity = 83/120 (69.17%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 14  IFSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVELYKYYFN 73
           I  + I L+ LV  S   +DYNSPIW+GWVDEDRGYTLRPCLD +++AKCQVELY YYFN
Sbjct: 6   ILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFN 65

Query: 74  ISKKELDLNCCVFVKFMGKSCAEAFTFSFDFPDLEVLKPNPMMAYKTCVRRLDAPPPSKF 133
           ISKKELDLNCCVFVK MGK CA+AFTF + FP LE+ +PNPM  Y  C+ RLDAPPP+ F
Sbjct: 66  ISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

BLAST of Sed0012469 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 7.3e-41
Identity = 87/135 (64.44%), Postives = 98/135 (72.59%), Query Frame = 0

Query: 1   MTKKTNTVVTLMGIFSWTIILATLVPRSMA--ADDYNSPIWNGWVDEDRGYTLRPCLDMV 60
           M   TNTV  ++ I    + LA LV  SMA   DDYNSPIWNGWVDEDR   LRPCLDM+
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFSFDFPDLEVLKPNPMMAY 120
           K+AKCQV+LY YYFNISKKELDL CCVFVK MGK CA AF   ++FP LEV +PNPM+ Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 KTCVRRLDAPPPSKF 134
             CV RL A PP+ F
Sbjct: 121 NNCVGRLQALPPTPF 135

BLAST of Sed0012469 vs. NCBI nr
Match: KAG6578867.1 (hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.1 bits (440), Expect = 8.1e-40
Identity = 84/122 (68.85%), Postives = 90/122 (73.77%), Query Frame = 0

Query: 12  MGIFSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVELYKYY 71
           M I    I LA L   S A DDYNSPIW+ WVDEDRG  LRPCLDM+K+AKCQVELY YY
Sbjct: 4   MVILLLAINLAFLAQPSTADDDYNSPIWDRWVDEDRGINLRPCLDMMKSAKCQVELYNYY 63

Query: 72  FNISKKELDLNCCVFVKFMGKSCAEAFTFSFDFPDLEVLKPNPMMAYKTCVRRLDAPPPS 131
           FNISKKELDLNCCVFVK MGK CA AF   F FP+ EV + NPM  YK CV RLDA PP+
Sbjct: 64  FNISKKELDLNCCVFVKVMGKRCARAFAGWFRFPEFEVFELNPMKVYKNCVGRLDALPPA 123

Query: 132 KF 134
            F
Sbjct: 124 PF 125

BLAST of Sed0012469 vs. NCBI nr
Match: KAE8646662.1 (hypothetical protein Csa_004797, partial [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 8.7e-34
Identity = 72/112 (64.29%), Postives = 87/112 (77.68%), Query Frame = 0

Query: 4   KTNTVVTLMGIFSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKC 63
           KTN +  ++ + S TI LA LV      +DYNS IWN W+DEDR +TLRPCLD +++AKC
Sbjct: 30  KTNAMRAMLILLS-TINLAKLVQPYGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSAKC 89

Query: 64  QVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFSFDFPDLEVLKPNPM 116
           QVELY YYFNISK+ELDLNCCVFVK MGK CA+AFTF + FP LE+ +PNPM
Sbjct: 90  QVELYNYYFNISKEELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPM 140

BLAST of Sed0012469 vs. NCBI nr
Match: KAG6575251.1 (hypothetical protein SDJN03_25890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.0 bits (380), Expect = 7.3e-33
Identity = 71/129 (55.04%), Postives = 90/129 (69.77%), Query Frame = 0

Query: 1   MTKKTNTVVTLMGIFSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKN 60
           M K+T+TV  L+ +    + L   V  + A DDYNSPIW+ W+D  R   LRPCL+++K+
Sbjct: 1   MAKETSTVGALV-VLLLAVNLQVFVRLTKANDDYNSPIWDRWLDAGRAPYLRPCLNLMKS 60

Query: 61  AKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFSFDFPDLEVLKPNPMMAYKT 120
            KCQV+LY  YFNI KK++DLNCCVFVK MG++CA  F   FD+P LEV KPNPM  YKT
Sbjct: 61  TKCQVQLYNNYFNIRKKKMDLNCCVFVKVMGENCARRFAGCFDYPSLEVYKPNPMKLYKT 120

Query: 121 CVRRLDAPP 130
           CV RL + P
Sbjct: 121 CVARLSSKP 128

BLAST of Sed0012469 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.6e-44
Identity = 83/120 (69.17%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 14  IFSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKNAKCQVELYKYYFN 73
           I  + I L+ LV  S   +DYNSPIW+GWVDEDRGYTLRPCLD +++AKCQVELY YYFN
Sbjct: 6   ILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYYFN 65

Query: 74  ISKKELDLNCCVFVKFMGKSCAEAFTFSFDFPDLEVLKPNPMMAYKTCVRRLDAPPPSKF 133
           ISKKELDLNCCVFVK MGK CA+AFTF + FP LE+ +PNPM  Y  C+ RLDAPPP+ F
Sbjct: 66  ISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPPAPF 125

BLAST of Sed0012469 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.5e-41
Identity = 87/135 (64.44%), Postives = 98/135 (72.59%), Query Frame = 0

Query: 1   MTKKTNTVVTLMGIFSWTIILATLVPRSMA--ADDYNSPIWNGWVDEDRGYTLRPCLDMV 60
           M   TNTV  ++ I    + LA LV  SMA   DDYNSPIWNGWVDEDR   LRPCLDM+
Sbjct: 1   MANGTNTVGGILTILLLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCLDMM 60

Query: 61  KNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFSFDFPDLEVLKPNPMMAY 120
           K+AKCQV+LY YYFNISKKELDL CCVFVK MGK CA AF   ++FP LEV +PNPM+ Y
Sbjct: 61  KSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPMIVY 120

Query: 121 KTCVRRLDAPPPSKF 134
             CV RL A PP+ F
Sbjct: 121 NNCVGRLQALPPTPF 135

BLAST of Sed0012469 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 6.0e-41
Identity = 82/131 (62.60%), Postives = 97/131 (74.05%), Query Frame = 0

Query: 1   MTKKTNTVVTLMGIFSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKN 60
           M  KTN +  ++ + S  I LA LV  S   +DYNS IWN W+DEDR +TLRPCLD +++
Sbjct: 1   MANKTNAMRAMVILLS-AINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRS 60

Query: 61  AKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFSFDFPDLEVLKPNPMMAYKT 120
           AKCQVELY YYFNISKKELDLNCCVFVK MGK CA+AFTF + FP LE+ +PNPM  Y  
Sbjct: 61  AKCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNN 120

Query: 121 CVRRLDAPPPS 132
           C  RL APPP+
Sbjct: 121 CATRLSAPPPT 130

BLAST of Sed0012469 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 8.7e-32
Identity = 68/131 (51.91%), Postives = 85/131 (64.89%), Query Frame = 0

Query: 1   MTKKTNTVVTLMGIFSWTIILATLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDMVKN 60
           M   T  ++ ++ +    +    LV  S   D+  S IW+ W+DEDR  TL PCL M+++
Sbjct: 1   MNNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRS 60

Query: 61  AKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFSFDFPDLEVLKPNPMMAYKT 120
            KCQVELY YYFNISKKELDL+CCV+V +MGK CA AF F F FP LE LKPNPM  Y  
Sbjct: 61  EKCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNN 120

Query: 121 CVRRLDAPPPS 132
           C +RL  P P+
Sbjct: 121 CFKRLTFPAPT 131

BLAST of Sed0012469 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.1e-24
Identity = 58/133 (43.61%), Postives = 83/133 (62.41%), Query Frame = 0

Query: 1   MTKKTNTVVTLMGIFSWTIILA---TLVPRSMAADDYNSPIWNGWVDEDRGYTLRPCLDM 60
           M K +N+   L+ +   ++++     LV  S+  D+  S IW+GW+D+DR   L  CL +
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  VKNAKCQVELYKYYFNISKKELDLNCCVFVKFMGKSCAEAFTFSFDFPDLEVLKPNPMMA 120
           +K+ KCQVELY YYFN SKKE+DL+CCV+V ++G+ CA +F   F     + LKPNPM  
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YKTCVRRLDAPPP 131
           Y  C +RL  P P
Sbjct: 121 YNNCFKRLTVPAP 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0046835.15.4e-4469.17hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004... [more]
KAA0046841.17.3e-4164.44hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044... [more]
KAG6578867.18.1e-4068.85hypothetical protein SDJN03_23315, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8646662.18.7e-3464.29hypothetical protein Csa_004797, partial [Cucumis sativus][more]
KAG6575251.17.3e-3355.04hypothetical protein SDJN03_25890, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C2802.6e-4469.17Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7TZR13.5e-4164.44Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A0A0KEB86.0e-4162.60Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543... [more]
A0A0A0KQ418.7e-3251.91Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818... [more]
A0A0A0L5355.1e-2443.61Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008502Prolamin-like domainPFAMPF05617Prolamin_likecoord: 54..105
e-value: 4.9E-5
score: 23.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0012469.1Sed0012469.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity