Sed0012423 (gene) Chayote v1

Overview


Name	Sed0012423
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RAB GTPase homolog A5B
Location	LG02: 47943441 .. 47944772 (-)
RNA-Seq Expression	Sed0012423
Synteny	Sed0012423

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCTTGGAGAACATCAGAGCCTCGCAGAAGGCGAAGGGTTGTTGTTCTTCATGGAAACATCAGCTCTAGACTCAACAGATGTTAAAAAGGCTTTCGAGATCGTGATCCGAGAAATAGACAACAATGTCACCAGGAAGGTCCTGCACTCTGATACCTACAAAGCAGAATTATCCATCAACCGGGTGAGCCTCGTAAACCATGGCGGATCGAAGAAATCGGAAAGCTATTTGTCTTGCTGTTCAAGGTGATATCTCTTAACTCCAAAAGTTGAGTGTCTTCACCATGTTGGCTTCTCTTAGCTTCTGGTTTCTGTTGGTTTGGTCATTCAAATTGGTTGCTTTTCTATGTTTATTTCCATATATAGAAATGAAATTATTATTTCCTTGAATTTAATTATTACAGGAAGAAACACTTTTGTATTAATTATTATTTGAAGAGAATAGTGAGAGCAAACACGAACAGTTTTTTTTATTTTTTATTTTTTAAATTTTTTAAGTTTGTAAAGTTTGTTGTAGCAAGAAATCCTTGGATGAATATTGACCAAGAGTTCCAATTATTGCTTCTTTTTTTTTTCCTCCTATGGAACTATCTTTTTTTTATCTTTCTGCAGAATTTTGGTACTAAACTGGGTTCTTTTTTATTTAAGGAAAATATTTTATATACTAAATATATGGATTATGGTAAATTATACCCTTCCTCTTCTTATTTTGTGGCATTTGATTAGAATCTTATGCTAGTCGTTAAATAATTAATGGGTTAAATAGGAATTCAGTTGTGAGCTTTAAATTTGGGATGTACAAGAGAGCCGATAACCCTACAAACCCAAACAACCCAACCTAAATCGGAAGGGTTGTGTTCGAAACAAAGCTATAACATTTCATTAAAAAAAATTAAGAATAAAGATATTTTTTTATTTAAAACAATGTGAAGGCCAAAGGTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAAGTTGGGTATTTAGTTTTGTAACAAAACTGCAACGATTTCCATTCAAATTCAATAGTAAAAGTATTTTCGAAATACTTTGTAAATTTTTAAAAAACAAATTTGGGAACTTTTCTAAATTTATGGGTGTGGTTGGCACAAACCATATATTTTTTATAAGTTAGCCTATTTAATTATAGGAAAATATTAGTAAATGTCTACATTTCCTAAACTAATTAAGGATATGTCTACAATATTTTTAATAAATTCTAAGAATGGACTTATATCGTTTTGTATATTTTCTTTTCACTTCTCTTTTTTTTTTAAGGTATTTTCTTTTCACTTCTTTGTTCTCTAG

mRNA sequence

ATGTGGCTTGGAGAACATCAGAGCCTCGCAGAAGGCGAAGGGTTGTTGTTCTTCATGGAAACATCAGCTCTAGACTCAACAGATGTTAAAAAGGCTTTCGAGATCGTGATCCGAGAAATAGACAACAATGTCACCAGGAAGGTCCTGCACTCTGATACCTACAAAGCAGAATTATCCATCAACCGGGTATTTTCTTTTCACTTCTTTGTTCTCTAG

Coding sequence (CDS)

ATGTGGCTTGGAGAACATCAGAGCCTCGCAGAAGGCGAAGGGTTGTTGTTCTTCATGGAAACATCAGCTCTAGACTCAACAGATGTTAAAAAGGCTTTCGAGATCGTGATCCGAGAAATAGACAACAATGTCACCAGGAAGGTCCTGCACTCTGATACCTACAAAGCAGAATTATCCATCAACCGGGTATTTTCTTTTCACTTCTTTGTTCTCTAG

Protein sequence

MWLGEHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRVFSFHFFVL

Homology

[Close]

BLAST of Sed0012423 vs. NCBI nr
Match: OMP07487.1 (Small GTPase superfamily [Corchorus olitorius])

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-15
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRVF 64
           E +SLAE EG LFFMETSALDST+VKKAFE+VIREI NNV+RKVL+SDTYKAEL++NRV 
Sbjct: 140 EGKSLAESEG-LFFMETSALDSTNVKKAFELVIREIYNNVSRKVLNSDTYKAELTVNRVI 199

Query: 65  SF 67
           +F
Sbjct: 200 TF 200

[Close]

BLAST of Sed0012423 vs. NCBI nr
Match: PON66894.1 (Small GTPase superfamily, Ras type [Parasponia andersonii])

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-15
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Sbjct: 45  EGKSLAEAEG-LFFMETSALDSTNVKKAFEIVIREIYNNVSRKVLNSDTYKAELSVNRV 102

[Close]

BLAST of Sed0012423 vs. NCBI nr
Match: XP_024028551.1 (ras-related protein RABA5e [Morus notabilis])

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-15
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Sbjct: 140 EGKSLAEAEG-LFFMETSALDSTNVKKAFEIVIREIYNNVSRKVLNSDTYKAELSVNRV 197

[Close]

BLAST of Sed0012423 vs. NCBI nr
Match: KAG6787284.1 (hypothetical protein POTOM_008923 [Populus tomentosa])

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Sbjct: 210 EGKSLAEAEG-LFFMETSALDSTNVKKAFEIVIREIYNNVSRKVLNSDTYKAELSLNRV 267

[Close]

BLAST of Sed0012423 vs. NCBI nr
Match: KAG5252080.1 (ras-related protein [Salix suchowensis])

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Sbjct: 86  EGKSLAEAEG-LFFMETSALDSTNVKKAFEIVIREIYNNVSRKVLNSDTYKAELSLNRV 143

[Close]

BLAST of Sed0012423 vs. ExPASy Swiss-Prot
Match: Q9SRS5 (Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.9e-16
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E ++LAE EG LFFMETSALD+T+V KAFEIVIREI NNV+RK+L+SD YKAELS+NRV
Sbjct: 139 EGKALAEEEG-LFFMETSALDATNVDKAFEIVIREIFNNVSRKLLNSDAYKAELSVNRV 196

[Close]

BLAST of Sed0012423 vs. ExPASy Swiss-Prot
Match: P28187 (Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-14
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E +SLAE EG LFFMETSALDST+VK AFE+VIREI +N++RK L+SD+YK EL++NRV
Sbjct: 139 EGKSLAESEG-LFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTVNRV 196

[Close]

BLAST of Sed0012423 vs. ExPASy Swiss-Prot
Match: P19892 (Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-13
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E ++LAE EG LFF+ETSALDST+VK AFE+VI +I NNV+RK L+SDTYK EL++NRV
Sbjct: 139 EGKALAEEEG-LFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKDELTVNRV 196

[Close]

BLAST of Sed0012423 vs. ExPASy Swiss-Prot
Match: Q9SIP0 (Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.1e-13
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSI-NRV 64
           E ++LAE EG LFFMETSALDST+VK AFE+VIR+I  N++RK L+SDTYK ELS+ NRV
Sbjct: 139 EGKALAETEG-LFFMETSALDSTNVKTAFEMVIRDIYTNISRKQLNSDTYKTELSMKNRV 197

[Close]

BLAST of Sed0012423 vs. ExPASy Swiss-Prot
Match: Q9FGK5 (Ras-related protein RABA5a OS=Arabidopsis thaliana OX=3702 GN=RABA5A PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.2e-06
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHS 52
           E ++LAE +G LFFMETSALDS++V  AFE V++EI N ++RKV+ S
Sbjct: 141 EGKALAEAQG-LFFMETSALDSSNVAAAFETVVKEIYNILSRKVMSS 186

[Close]

BLAST of Sed0012423 vs. ExPASy TrEMBL
Match: A0A2P5D0R3 (Small GTPase superfamily, Ras type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_106800 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.1e-16
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Sbjct: 45  EGKSLAEAEG-LFFMETSALDSTNVKKAFEIVIREIYNNVSRKVLNSDTYKAELSVNRV 102

[Close]

BLAST of Sed0012423 vs. ExPASy TrEMBL
Match: A0A1R3KK73 (Small GTPase superfamily OS=Corchorus olitorius OX=93759 GN=COLO4_07301 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.1e-16
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRVF 64
           E +SLAE EG LFFMETSALDST+VKKAFE+VIREI NNV+RKVL+SDTYKAEL++NRV 
Sbjct: 140 EGKSLAESEG-LFFMETSALDSTNVKKAFELVIREIYNNVSRKVLNSDTYKAELTVNRVI 199

Query: 65  SF 67
           +F
Sbjct: 200 TF 200

[Close]

BLAST of Sed0012423 vs. ExPASy TrEMBL
Match: B9SN17 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1518710 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.0e-16
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Sbjct: 139 EGKSLAEAEG-LFFMETSALDSTNVKKAFEIVIREIYNNVSRKVLNSDTYKAELSLNRV 196

[Close]

BLAST of Sed0012423 vs. ExPASy TrEMBL
Match: A0A2K2BN63 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G231800 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.0e-16
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Sbjct: 139 EGKSLAEAEG-LFFMETSALDSTNVKKAFEIVIREIYNNVSRKVLNSDTYKAELSLNRV 196

[Close]

BLAST of Sed0012423 vs. ExPASy TrEMBL
Match: A0A4U5MYD5 (Ras-related protein RABA5d-like OS=Populus alba OX=43335 GN=D5086_0000291070 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.0e-16
Identity = 50/59 (84.75%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E +SLAE EG LFFMETSALDST+VKKAFEIVIREI NNV+RKVL+SDTYKAELS+NRV
Sbjct: 139 EGKSLAEAEG-LFFMETSALDSTNVKKAFEIVIREIYNNVSRKVLNSDTYKAELSLNRV 196

[Close]

BLAST of Sed0012423 vs. TAIR 10
Match: AT3G07410.1 (RAB GTPase homolog A5B )

HSP 1 Score: 84.3 bits (207), Expect = 4.2e-17
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E ++LAE EG LFFMETSALD+T+V KAFEIVIREI NNV+RK+L+SD YKAELS+NRV
Sbjct: 139 EGKALAEEEG-LFFMETSALDATNVDKAFEIVIREIFNNVSRKLLNSDAYKAELSVNRV 196

[Close]

BLAST of Sed0012423 vs. TAIR 10
Match: AT2G43130.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 7.9e-16
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E +SLAE EG LFFMETSALDST+VK AFE+VIREI +N++RK L+SD+YK EL++NRV
Sbjct: 139 EGKSLAESEG-LFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTVNRV 196

[Close]

BLAST of Sed0012423 vs. TAIR 10
Match: AT1G05810.1 (RAB GTPase homolog A5E )

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-14
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSINRV 64
           E ++LAE EG LFF+ETSALDST+VK AFE+VI +I NNV+RK L+SDTYK EL++NRV
Sbjct: 182 EGKALAEEEG-LFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKDELTVNRV 239

[Close]

BLAST of Sed0012423 vs. TAIR 10
Match: AT2G31680.1 (RAB GTPase homolog A5D )

HSP 1 Score: 74.3 bits (181), Expect = 4.3e-14
Identity = 42/60 (70.00%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHSDTYKAELSI-NRV 64
           E ++LAE EG LFFMETSALDST+VK AFE+VIR+I  N++RK L+SDTYK ELS+ NRV
Sbjct: 139 EGKALAETEG-LFFMETSALDSTNVKTAFEMVIRDIYTNISRKQLNSDTYKTELSMKNRV 197

[Close]

BLAST of Sed0012423 vs. TAIR 10
Match: AT5G47520.1 (RAB GTPase homolog A5A )

HSP 1 Score: 51.6 bits (122), Expect = 3.0e-07
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 5   EHQSLAEGEGLLFFMETSALDSTDVKKAFEIVIREIDNNVTRKVLHS 52
           E ++LAE +G LFFMETSALDS++V  AFE V++EI N ++RKV+ S
Sbjct: 141 EGKALAEAQG-LFFMETSALDSSNVAAAFETVVKEIYNILSRKVMSS 186

The following BLAST results are available for this feature:

BLAST of Sed0012423 vs. NCBI nr


Match Name	E-value	Identity	Description
OMP07487.1	1.3e-15	79.03	Small GTPase superfamily [Corchorus olitorius]	[more]
PON66894.1	1.3e-15	84.75	Small GTPase superfamily, Ras type [Parasponia andersonii]	[more]
XP_024028551.1	1.3e-15	84.75	ras-related protein RABA5e [Morus notabilis]	[more]
KAG6787284.1	1.7e-15	84.75	hypothetical protein POTOM_008923 [Populus tomentosa]	[more]
KAG5252080.1	1.7e-15	84.75	ras-related protein [Salix suchowensis]	[more]

BLAST of Sed0012423 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRS5	5.9e-16	76.27	Ras-related protein RABA5b OS=Arabidopsis thaliana OX=3702 GN=RABA5B PE=1 SV=1	[more]
P28187	1.1e-14	71.19	Ras-related protein RABA5c OS=Arabidopsis thaliana OX=3702 GN=RABA5C PE=1 SV=1	[more]
P19892	1.6e-13	69.49	Ras-related protein RABA5e OS=Arabidopsis thaliana OX=3702 GN=RABA5E PE=2 SV=1	[more]
Q9SIP0	6.1e-13	70.00	Ras-related protein RABA5d OS=Arabidopsis thaliana OX=3702 GN=RABA5D PE=1 SV=1	[more]
Q9FGK5	4.2e-06	59.57	Ras-related protein RABA5a OS=Arabidopsis thaliana OX=3702 GN=RABA5A PE=1 SV=1	[more]

BLAST of Sed0012423 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5D0R3	6.1e-16	84.75	Small GTPase superfamily, Ras type OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A1R3KK73	6.1e-16	79.03	Small GTPase superfamily OS=Corchorus olitorius OX=93759 GN=COLO4_07301 PE=4 SV=...	[more]
B9SN17	8.0e-16	84.75	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1518710 PE=4 SV=1	[more]
A0A2K2BN63	8.0e-16	84.75	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G231800 PE=4 ...	[more]
A0A4U5MYD5	8.0e-16	84.75	Ras-related protein RABA5d-like OS=Populus alba OX=43335 GN=D5086_0000291070 PE=...	[more]

BLAST of Sed0012423 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07410.1	4.2e-17	76.27	RAB GTPase homolog A5B	[more]
AT2G43130.1	7.9e-16	71.19	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G05810.1	1.1e-14	69.49	RAB GTPase homolog A5E	[more]
AT2G31680.1	4.3e-14	70.00	RAB GTPase homolog A5D	[more]
AT5G47520.1	3.0e-07	59.57	RAB GTPase homolog A5A	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47979	DRAB11-RELATED	coord: 5..63
None	No IPR available	PANTHER	PTHR47979:SF31	RAS-RELATED PROTEIN RABA5B-LIKE	coord: 5..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012423.1	Sed0012423.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0046983	protein dimerization activity