Sed0012384 (gene) Chayote v1

Overview


Name	Sed0012384
Type	gene
Organism	Sechium edule (Chayote v1)
Description	LOB domain-containing protein
Location	LG05: 38101877 .. 38103400 (+)
RNA-Seq Expression	Sed0012384
Synteny	Sed0012384

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACGAGTGTTTGAGAAAAGTCCGATTAGAGGGTTTTAAAACTGCGTGCCTCTGCCCTTAAATATATCCCTCCTTTCTCATATCCCCAAACCCATTTCTGCCTCTCCATTTTATGCTTCGATTCCGTTCATAATGCGGATGAGTTGTAATGGCTGCAGAGTTCTGCGCAAAGGCTGCAGCGAAAACTGCAGTATTCGACCCTGCTTGCAATGGATCAAAACCTCTGAATCTCAGGCCAACGCCACCGTCTTCCTCGCCAAGTTCTACGGCCGCGCCGGACTCATGAACCTCATCAACGCCGGCCCCGACCATCTCCGCCCTGGTGGGTTTTCCTTTTTCTTTCCTCTTTTCCATTTTGGGGGCTTTTTTTGTTGAGTTTTGTTCTTGCTCTGTTTCTGCAGCCATTTTCCGATCTCTTCTCTATGAGGCCTGTGGACGGATTGTCAACCCCATCTACGGTTCGGTTGGCTTGTTGTGGTCCGGGAGCTGGCAGCTCTGTCAGGCCGCCGTCGAGGCCGTCCTCAAAGGCGCTCCGATCACGCCTATTAACTCCGAGGCGGCCGCCACCGGCGATGGCCCGCCGTTGAAGGCCTACGACATCCGCCACGTTTCCAAGGATGAAAACTCCGCCGCTTCCACCCGCCCTGTCAAGACTCGCTGCCGGTTCAAGCGCTCTGCCAAACCCAGTCGAGGAATCGCATCCCCCGAGTTCAACCGGTCCTCCAGCGGCGACTCGTCGCTGAGTCACCAGTCCGACTCGCCGCATCTCGAGCACCAGAGCAAGGAATCCCAGAGCATGATCTCCGGCGAAGCGGCGGTAGTATCTCCGCCGCCGCCGCCGGTTCTGATGGCGGATAAGGAATTGGGGTTAGAACTAACCCTGGGGATGGAACCGGTGTCACGTGCACAGCAGCACGTGATACCAATGAAGAAGCGGAAGATAGAGGCCCGGCCCAACAAGGAAGCGTGCAATACGGTTCTGGGCCTGGATTTTTCAGCCTGAAAGTGAGGCCCGGCCCAATTTAAGACCCCACTGACACAACGAAACAAAAAAAAAACAAGAGAGAATAAAAGAGAGTACAATTTTGACGGCGGGGATTGGCTATCTTCGGTGGCATGGAAGAGATCTCGACCATTTGTTTTTTTAGTTTTTGTTAATTTACTGTTTTAGCCCTCTCTCTCCCCTCTTGTAACGAGAAGCGATGTGTATAAAAAAACTGGTCGCAAAATGTGTACAGAGAAGGAATATGCTGTAAAAATGCAACAGGAGACGAAAAGGTTTTTTCATTTCTTATTTATTTCTTTATTTTTTTTTATATATATCTCTTGGAACTAATATATGACTTTGTATAGCATTTTTAAATTGATAAATAGAACTAAGAAGAATTAAATCGTGTTTGGTTTGGTAAGATTCCTAGGTTCTTGATTGAGCGTTGAATGAAATGAATCTGGCTTTGTTTCTATTTAAGTTAAGCTCGTTTACAATGAATTTATAAATTTTGTTTACGACCTTTTGAAATTCTG

mRNA sequence

AAACGAGTGTTTGAGAAAAGTCCGATTAGAGGGTTTTAAAACTGCGTGCCTCTGCCCTTAAATATATCCCTCCTTTCTCATATCCCCAAACCCATTTCTGCCTCTCCATTTTATGCTTCGATTCCGTTCATAATGCGGATGAGTTGTAATGGCTGCAGAGTTCTGCGCAAAGGCTGCAGCGAAAACTGCAGTATTCGACCCTGCTTGCAATGGATCAAAACCTCTGAATCTCAGGCCAACGCCACCGTCTTCCTCGCCAAGTTCTACGGCCGCGCCGGACTCATGAACCTCATCAACGCCGGCCCCGACCATCTCCGCCCTGCCATTTTCCGATCTCTTCTCTATGAGGCCTGTGGACGGATTGTCAACCCCATCTACGGTTCGGTTGGCTTGTTGTGGTCCGGGAGCTGGCAGCTCTGTCAGGCCGCCGTCGAGGCCGTCCTCAAAGGCGCTCCGATCACGCCTATTAACTCCGAGGCGGCCGCCACCGGCGATGGCCCGCCGTTGAAGGCCTACGACATCCGCCACGTTTCCAAGGATGAAAACTCCGCCGCTTCCACCCGCCCTGTCAAGACTCGCTGCCGGTTCAAGCGCTCTGCCAAACCCAGTCGAGGAATCGCATCCCCCGAGTTCAACCGGTCCTCCAGCGGCGACTCGTCGCTGAGTCACCAGTCCGACTCGCCGCATCTCGAGCACCAGAGCAAGGAATCCCAGAGCATGATCTCCGGCGAAGCGGCGGTAGTATCTCCGCCGCCGCCGCCGGTTCTGATGGCGGATAAGGAATTGGGGTTAGAACTAACCCTGGGGATGGAACCGGTGTCACGTGCACAGCAGCACGTGATACCAATGAAGAAGCGGAAGATAGAGGCCCGGCCCAACAAGGAAGCGTGCAATACGGTTCTGGGCCTGGATTTTTCAGCCTGAAAGTGAGGCCCGGCCCAATTTAAGACCCCACTGACACAACGAAACAAAAAAAAAACAAGAGAGAATAAAAGAGAGTACAATTTTGACGGCGGGGATTGGCTATCTTCGGTGGCATGGAAGAGATCTCGACCATTTGTTTTTTTAGTTTTTGTTAATTTACTGTTTTAGCCCTCTCTCTCCCCTCTTGTAACGAGAAGCGATGTGTATAAAAAAACTGGTCGCAAAATGTGTACAGAGAAGGAATATGCTGTAAAAATGCAACAGGAGACGAAAAGGTTTTTTCATTTCTTATTTATTTCTTTATTTTTTTTTATATATATCTCTTGGAACTAATATATGACTTTGTATAGCATTTTTAAATTGATAAATAGAACTAAGAAGAATTAAATCGTGTTTGGTTTGGTAAGATTCCTAGGTTCTTGATTGAGCGTTGAATGAAATGAATCTGGCTTTGTTTCTATTTAAGTTAAGCTCGTTTACAATGAATTTATAAATTTTGTTTACGACCTTTTGAAATTCTG

Coding sequence (CDS)

ATGCGGATGAGTTGTAATGGCTGCAGAGTTCTGCGCAAAGGCTGCAGCGAAAACTGCAGTATTCGACCCTGCTTGCAATGGATCAAAACCTCTGAATCTCAGGCCAACGCCACCGTCTTCCTCGCCAAGTTCTACGGCCGCGCCGGACTCATGAACCTCATCAACGCCGGCCCCGACCATCTCCGCCCTGCCATTTTCCGATCTCTTCTCTATGAGGCCTGTGGACGGATTGTCAACCCCATCTACGGTTCGGTTGGCTTGTTGTGGTCCGGGAGCTGGCAGCTCTGTCAGGCCGCCGTCGAGGCCGTCCTCAAAGGCGCTCCGATCACGCCTATTAACTCCGAGGCGGCCGCCACCGGCGATGGCCCGCCGTTGAAGGCCTACGACATCCGCCACGTTTCCAAGGATGAAAACTCCGCCGCTTCCACCCGCCCTGTCAAGACTCGCTGCCGGTTCAAGCGCTCTGCCAAACCCAGTCGAGGAATCGCATCCCCCGAGTTCAACCGGTCCTCCAGCGGCGACTCGTCGCTGAGTCACCAGTCCGACTCGCCGCATCTCGAGCACCAGAGCAAGGAATCCCAGAGCATGATCTCCGGCGAAGCGGCGGTAGTATCTCCGCCGCCGCCGCCGGTTCTGATGGCGGATAAGGAATTGGGGTTAGAACTAACCCTGGGGATGGAACCGGTGTCACGTGCACAGCAGCACGTGATACCAATGAAGAAGCGGAAGATAGAGGCCCGGCCCAACAAGGAAGCGTGCAATACGGTTCTGGGCCTGGATTTTTCAGCCTGA

Protein sequence

MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSAASTRPVKTRCRFKRSAKPSRGIASPEFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPPPVLMADKELGLELTLGMEPVSRAQQHVIPMKKRKIEARPNKEACNTVLGLDFSA

Homology

[Close]

BLAST of Sed0012384 vs. NCBI nr
Match: KAG6607034.1 (LOB domain-containing protein 41, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 416.4 bits (1069), Expect = 1.8e-112
Identity = 229/309 (74.11%), Postives = 242/309 (78.32%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSENCSIRPCLQWIK+ ESQANATVFLAKFYGRAGLMNLINAGP+H
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRPAIFRSLLYEACGRIVNPIYGSVGLLWS +W LCQAAVEAVLKGAPI PINSEAAATG
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSSNWYLCQAAVEAVLKGAPIIPINSEAAATG 120

Query: 121 DGPPLKAYDIRHVSKDENSAAS-----TRPVKTRCRFKRSA---KPSRGIA--------- 180
           DGPPLKAYDIRH+SKDENSAAS      R V+TRCRFKRSA   K S GIA         
Sbjct: 121 DGPPLKAYDIRHISKDENSAASNDGGANRRVRTRCRFKRSAVKDKESTGIASAVAESTRR 180

Query: 181 ---SPEFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPPP---------- 240
              S E NRSSSGDSSLSHQSDSPHLEH+SKE++SMIS E A VSPP PP          
Sbjct: 181 LFSSTEINRSSSGDSSLSHQSDSPHLEHESKETESMISVETADVSPPSPPSAFFRSESSH 240

Query: 241 ------------VLMADKELGLELTLGMEPVSRAQQHVIPMKKRKIEA----RPNKEACN 264
                       + + + EL LELTLGMEPVSRA QHV+PMKKRKIE     RPNKE CN
Sbjct: 241 VQRKFTNHDGVRMTIPESELALELTLGMEPVSRA-QHVVPMKKRKIEGNDGLRPNKETCN 300

[Close]

BLAST of Sed0012384 vs. NCBI nr
Match: XP_008461588.2 (PREDICTED: LOB domain-containing protein 41 [Cucumis melo])

HSP 1 Score: 414.5 bits (1064), Expect = 7.0e-112
Identity = 231/303 (76.24%), Postives = 239/303 (78.88%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSENCSIRPCLQWIKT ESQANATVFLAKFYGRAGLMNLINAGPDH
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSE AATG
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSETAATG 120

Query: 121 DGPPLKAYDIRHVSKDENSAAST-----RPVKTRCRFKRS---AKPSRGIA--------- 180
           DGPPLKAYDIRHVSKDENS AS      RPVKTRCRFKRS   AK S+GIA         
Sbjct: 121 DGPPLKAYDIRHVSKDENSVASNDGGVIRPVKTRCRFKRSSAKAKASKGIASTVVDESTR 180

Query: 181 ---SPEFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPP----------- 240
              S E NRSSSG+SSLSHQSDS HLE++SKE++SMIS E A VSPP P           
Sbjct: 181 PLCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPPCPVQSVLFRSEST 240

Query: 241 -----PVLMADKELGLELTLGMEPVSRAQQHVIPMKKRKIEA----RPNKEACNTVLGLD 264
                 V +   EL LELTLGMEPV RA QHVIPMKKRKIE     RP  E CNTVLGLD
Sbjct: 241 GRESVAVPIPRSELALELTLGMEPVLRA-QHVIPMKKRKIETDVGLRPKNETCNTVLGLD 300

[Close]

BLAST of Sed0012384 vs. NCBI nr
Match: XP_022948958.1 (LOB domain-containing protein 41-like [Cucurbita moschata] >XP_022948959.1 LOB domain-containing protein 41-like [Cucurbita moschata])

HSP 1 Score: 412.9 bits (1060), Expect = 2.0e-111
Identity = 226/309 (73.14%), Postives = 242/309 (78.32%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSENCSIRPCLQWIK+ ESQANATVFLAKFYGRAGLMNLINAGP+H
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRPAIFRSLLYEACGRIVNPIYGSVGLLWS +W LCQAAVEAVLKG+PI PINSEAAATG
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSSNWHLCQAAVEAVLKGSPIIPINSEAAATG 120

Query: 121 DGPPLKAYDIRHVSKDENSAAS-----TRPVKTRCRFKRSA---KPSRGI---------- 180
           DGPPLKAYDIRH+SKDENSAAS      R V+TRCRFKRSA   K S GI          
Sbjct: 121 DGPPLKAYDIRHISKDENSAASNDGGANRRVRTRCRFKRSAVKDKESTGIVSAVAESTRR 180

Query: 181 --ASPEFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPPP---------- 240
             +S E NRSSSG+SSLSHQSDSPHLEH+SKE++SMIS E A VSPP PP          
Sbjct: 181 LFSSTEINRSSSGESSLSHQSDSPHLEHESKETESMISVETADVSPPSPPSAFFRSESSH 240

Query: 241 ------------VLMADKELGLELTLGMEPVSRAQQHVIPMKKRKIEA----RPNKEACN 264
                       + + + EL LELTLGMEPVSRA QHV+PMKKRKIE     RPNKE CN
Sbjct: 241 VQRKFTNHDGGRMTIPESELALELTLGMEPVSRA-QHVVPMKKRKIEGNDGLRPNKETCN 300

[Close]

BLAST of Sed0012384 vs. NCBI nr
Match: XP_004145641.1 (LOB domain-containing protein 41 [Cucumis sativus] >KAE8650578.1 hypothetical protein Csa_011448 [Cucumis sativus])

HSP 1 Score: 412.1 bits (1058), Expect = 3.5e-111
Identity = 230/303 (75.91%), Postives = 239/303 (78.88%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSENCSIRPCLQWIK+ ESQANATVFLAKFYGRAGLMNLINAGPDH
Sbjct: 63  MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPDH 122

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAA TG
Sbjct: 123 LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAATTG 182

Query: 121 DGPPLKAYDIRHVSKDENSAAS-----TRPVKTRCRFKRS---AKPSRGIA--------- 180
           DGPPLKAYDIRHVSKDENS AS      RPVKTRCRFKRS   AK S+GIA         
Sbjct: 183 DGPPLKAYDIRHVSKDENSVASNDGGANRPVKTRCRFKRSSVKAKASKGIASTVVDESTR 242

Query: 181 ---SPEFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPP----------- 240
              S E NRSSSG+SSLSHQSDS HLE++SKE++SMIS E A VSP P            
Sbjct: 243 PVCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPRPAQSVLFRSESTG 302

Query: 241 -----PVLMADKELGLELTLGMEPVSRAQQHVIPMKKRKIEA----RPNKEACNTVLGLD 264
                 V +   EL LELTLGMEPV RA QHVIPMKKRKIEA    RP  E CNTVLGLD
Sbjct: 303 GREGVSVPIPPSELALELTLGMEPVLRA-QHVIPMKKRKIEAEVGLRPKSETCNTVLGLD 362

[Close]

BLAST of Sed0012384 vs. NCBI nr
Match: XP_038899244.1 (LOB domain-containing protein 40 [Benincasa hispida])

HSP 1 Score: 411.8 bits (1057), Expect = 4.6e-111
Identity = 230/301 (76.41%), Postives = 238/301 (79.07%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSENCSIRPCLQWIKT ESQANATVFLAKFYGRAGLMNLINAGPDH
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSE AAT 
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSETAATA 120

Query: 121 DGPPLKAYDIRHVSKDENSAAS-----TRPVKTRCRFKRSA---KPSRGIA--------- 180
           DGPPLKAYDIRHVSKDENS AS      R VKTRCRFKRSA   K S+GIA         
Sbjct: 121 DGPPLKAYDIRHVSKDENSVASNDTEANRRVKTRCRFKRSAVKGKASKGIASTVDESTRR 180

Query: 181 --SPEFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPPP----------- 240
             S E NRSSSG+SSLSHQSDS HLE++SKE++S+IS   A  SPPP P           
Sbjct: 181 LCSTELNRSSSGESSLSHQSDSRHLENESKETESIISVGTAEDSPPPVPSVFSRSESTGH 240

Query: 241 ----VLMADKELGLELTLGMEPVSRAQQHVIPMKKRKIEA----RPNKEACNTVLGLDFS 264
               V +   EL LELTLGMEPV RA QHVIPMKKRKIEA    RPN E CNTVLGLDFS
Sbjct: 241 DGGAVPIPQSELALELTLGMEPVLRA-QHVIPMKKRKIEADVGFRPNNETCNTVLGLDFS 300

[Close]

BLAST of Sed0012384 vs. ExPASy Swiss-Prot
Match: Q9M886 (LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 2.0e-77
Identity = 162/252 (64.29%), Postives = 192/252 (76.19%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSE+CSIRPCL WIK+ E+QANATVFLAKFYGRAGLMNLINAGP+H
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRP IFRSLL+EACGRIVNPIYGSVGLLWSG+WQLCQ AVEAV+KG P+  I ++AA  G
Sbjct: 61  LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120

Query: 121 DGPPLKAYDIRHVSKDENSAAST------RPVKTRCRFKRSAKPSRGIASPEFNRSSSGD 180
            GPPLK YDIRH+SKD+NSAA+       +  KTR R KR +  +    S   +  +S D
Sbjct: 121 QGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTR-RAKRVSTVAIQAESEGKSDEASHD 180

Query: 181 SSLSHQSD--SPHLEHQSKESQSMISGEAAVVSPPPPPVLMADKELGLELTLGMEPVSRA 240
           SSLSHQS+  + H E +SKES+S +S   A      PP +    E+ L+LTL +EPVSRA
Sbjct: 181 SSLSHQSEIVAAH-EGESKESESNVSEVLAF----SPPAVKGSGEIKLDLTLRLEPVSRA 240

Query: 241 QQHVIPMKKRKI 245
             HV+P+KKR+I
Sbjct: 241 -YHVVPVKKRRI 245

[Close]

BLAST of Sed0012384 vs. ExPASy Swiss-Prot
Match: Q9ZW96 (LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.6e-74
Identity = 160/266 (60.15%), Postives = 184/266 (69.17%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSENCSIRPCLQWIK++ESQANATVFLAKFYGRAGLMNL+N GPDH
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRPAIFRSLLYEACGRIVNPIYGSVGLLWSG+W LCQAAVEAV++G+P+TPI  +AA TG
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG 120

Query: 121 DGPPL--KAYDIRHV-SKDENSAASTRPVKTRCRFKRSAKPSRGIASPEFN-RSSSGDSS 180
             PP   K  DIRHV S+DEN       VK R         SRG    E N RS S +SS
Sbjct: 121 QAPPFNNKLCDIRHVSSRDEN-------VKRR---------SRGACKEERNVRSLSHESS 180

Query: 181 LSHQSDSPHLEHQSKESQSMISGEAAVVSPPPPPVLMADKELGLELTLGMEPVSRAQQHV 240
           LSH+S     E  ++E ++ I                     GLELTLG+EP++R    V
Sbjct: 181 LSHESPVSSEETTTEEPKTWI---------------------GLELTLGLEPLARGNHVV 229

Query: 241 IPMKKRKIE---ARPNKEACNTVLGL 260
           +PMKKRK+E      +++ C   LGL
Sbjct: 241 VPMKKRKLERCGTSEDEDTCKIELGL 229

[Close]

BLAST of Sed0012384 vs. ExPASy Swiss-Prot
Match: Q9CA30 (LOB domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=LBD42 PE=1 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 8.2e-55
Identity = 129/242 (53.31%), Postives = 162/242 (66.94%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MR+SCNGCRVLRKGC+++C+IRPCLQWIK+++SQANAT+FLAKFYGRAGL+NLI +GPDH
Sbjct: 1   MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPI--TPINSEAAA 120
           LRPAIFRSLLYEACGRIVNP+ GSVGL+WSG+W  CQAAV+AVL G PI  TP+ S +A+
Sbjct: 61  LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120

Query: 121 TGDGPPLKAYDIRHVSKD--------ENSAASTRPVKTRC---RFKRSAKPSRGIASPEF 180
               PP + YDIRHV+KD        EN A      K++    RFKR +    G  S + 
Sbjct: 121 HQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKRESVNQLGECSHDM 180

Query: 181 NRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPPPVLMADK----ELGLELT 226
            +  S  SS +H     H   ++ ES+       A  +   P +   D+    E+GLEL 
Sbjct: 181 WQLPS--SSATH--GYGHFTLENVESR-----REAPFNQSSPNLGFDDQVDINEVGLELR 233

[Close]

BLAST of Sed0012384 vs. ExPASy Swiss-Prot
Match: Q9FN11 (LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.5e-43
Identity = 75/110 (68.18%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDHLR 62
           MSCNGCRVLRKGCSENC +RPC+QWI+T+++Q +ATVF+AKF+GRAGLM+ I+A PD  R
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPI 113
           PA+F+SLLYEACGR VNP+ G++G+LW+G+W +CQAAVE VL+G  + PI
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPI 110

[Close]

BLAST of Sed0012384 vs. ExPASy Swiss-Prot
Match: Q9SN23 (LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 9.4e-43
Identity = 94/189 (49.74%), Postives = 124/189 (65.61%), Query Frame = 0


Query: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDHLR 62
           MSCNGCRVLRKGCSENC +RPC+QWI++ E+Q +ATVF+AKF+GRAGLM+ I+A P+   
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPI----NSEAAA 122
           PA+F+SLLYEACGR VNP+ G+VGLLW+G+W +CQAAVE VL+G  + PI    N    A
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

Query: 123 -----TGDGPPLKAYDIRHVSKDENSAASTRPVKTRCRFKRSAKPSRGIASPEFNRSSSG 182
                T D       ++ ++ K ++S    R +   CRF  S   SR  ASP   +  S 
Sbjct: 121 GFPSPTSDEASEICTEMLNLRKADDS--GDRNIYHHCRFSSSRSRSRSTASPPKRKRLSS 180

[Close]

BLAST of Sed0012384 vs. ExPASy TrEMBL
Match: A0A1S3CEU1 (LOB domain-containing protein 41 OS=Cucumis melo OX=3656 GN=LOC103500157 PE=3 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 3.4e-112
Identity = 231/303 (76.24%), Postives = 239/303 (78.88%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSENCSIRPCLQWIKT ESQANATVFLAKFYGRAGLMNLINAGPDH
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSE AATG
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSETAATG 120

Query: 121 DGPPLKAYDIRHVSKDENSAAST-----RPVKTRCRFKRS---AKPSRGIA--------- 180
           DGPPLKAYDIRHVSKDENS AS      RPVKTRCRFKRS   AK S+GIA         
Sbjct: 121 DGPPLKAYDIRHVSKDENSVASNDGGVIRPVKTRCRFKRSSAKAKASKGIASTVVDESTR 180

Query: 181 ---SPEFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPP----------- 240
              S E NRSSSG+SSLSHQSDS HLE++SKE++SMIS E A VSPP P           
Sbjct: 181 PLCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPPCPVQSVLFRSEST 240

Query: 241 -----PVLMADKELGLELTLGMEPVSRAQQHVIPMKKRKIEA----RPNKEACNTVLGLD 264
                 V +   EL LELTLGMEPV RA QHVIPMKKRKIE     RP  E CNTVLGLD
Sbjct: 241 GRESVAVPIPRSELALELTLGMEPVLRA-QHVIPMKKRKIETDVGLRPKNETCNTVLGLD 300

[Close]

BLAST of Sed0012384 vs. ExPASy TrEMBL
Match: A0A6J1GAR7 (LOB domain-containing protein 41-like OS=Cucurbita moschata OX=3662 GN=LOC111452450 PE=3 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 9.9e-112
Identity = 226/309 (73.14%), Postives = 242/309 (78.32%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSENCSIRPCLQWIK+ ESQANATVFLAKFYGRAGLMNLINAGP+H
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRPAIFRSLLYEACGRIVNPIYGSVGLLWS +W LCQAAVEAVLKG+PI PINSEAAATG
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSSNWHLCQAAVEAVLKGSPIIPINSEAAATG 120

Query: 121 DGPPLKAYDIRHVSKDENSAAS-----TRPVKTRCRFKRSA---KPSRGI---------- 180
           DGPPLKAYDIRH+SKDENSAAS      R V+TRCRFKRSA   K S GI          
Sbjct: 121 DGPPLKAYDIRHISKDENSAASNDGGANRRVRTRCRFKRSAVKDKESTGIVSAVAESTRR 180

Query: 181 --ASPEFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPPP---------- 240
             +S E NRSSSG+SSLSHQSDSPHLEH+SKE++SMIS E A VSPP PP          
Sbjct: 181 LFSSTEINRSSSGESSLSHQSDSPHLEHESKETESMISVETADVSPPSPPSAFFRSESSH 240

Query: 241 ------------VLMADKELGLELTLGMEPVSRAQQHVIPMKKRKIEA----RPNKEACN 264
                       + + + EL LELTLGMEPVSRA QHV+PMKKRKIE     RPNKE CN
Sbjct: 241 VQRKFTNHDGGRMTIPESELALELTLGMEPVSRA-QHVVPMKKRKIEGNDGLRPNKETCN 300

[Close]

BLAST of Sed0012384 vs. ExPASy TrEMBL
Match: A0A0A0LCG6 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G278920 PE=3 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.7e-111
Identity = 230/303 (75.91%), Postives = 239/303 (78.88%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSENCSIRPCLQWIK+ ESQANATVFLAKFYGRAGLMNLINAGPDH
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPDH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAA TG
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAATTG 120

Query: 121 DGPPLKAYDIRHVSKDENSAAS-----TRPVKTRCRFKRS---AKPSRGIA--------- 180
           DGPPLKAYDIRHVSKDENS AS      RPVKTRCRFKRS   AK S+GIA         
Sbjct: 121 DGPPLKAYDIRHVSKDENSVASNDGGANRPVKTRCRFKRSSVKAKASKGIASTVVDESTR 180

Query: 181 ---SPEFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPP----------- 240
              S E NRSSSG+SSLSHQSDS HLE++SKE++SMIS E A VSP P            
Sbjct: 181 PVCSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPRPAQSVLFRSESTG 240

Query: 241 -----PVLMADKELGLELTLGMEPVSRAQQHVIPMKKRKIEA----RPNKEACNTVLGLD 264
                 V +   EL LELTLGMEPV RA QHVIPMKKRKIEA    RP  E CNTVLGLD
Sbjct: 241 GREGVSVPIPPSELALELTLGMEPVLRA-QHVIPMKKRKIEAEVGLRPKSETCNTVLGLD 300

[Close]

BLAST of Sed0012384 vs. ExPASy TrEMBL
Match: A0A6J1J6I5 (LOB domain-containing protein 41 OS=Cucurbita maxima OX=3661 GN=LOC111482207 PE=3 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.8e-111
Identity = 229/307 (74.59%), Postives = 243/307 (79.15%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSENCSIRPCL WIK+ +SQANATVFLAKFYGRAGLMNLINAGPDH
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLHWIKSPDSQANATVFLAKFYGRAGLMNLINAGPDH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120

Query: 121 DGPPLKAYDIRHVSKDENSAAS-----TRPVKTRCRFKRS---AKPSRGIASP------- 180
           DGPPLKAYDIRHVSKDENSAAS      R VKTRCRFKRS   AK  +GI+S        
Sbjct: 121 DGPPLKAYDIRHVSKDENSAASNDGGVNRRVKTRCRFKRSAVKAKACKGISSTVEESTRR 180

Query: 181 ----EFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPP-PVL-------- 240
               E NRSSSG+SSLSHQSDSPH+E++SKE++SMIS   A  SPPP  PVL        
Sbjct: 181 LCSIELNRSSSGESSLSHQSDSPHVENESKETESMISVSTAEFSPPPVLPVLFRSESTSV 240

Query: 241 ------------MADKELGLELTLGMEPVSRAQQHVIPMKKRKIEA----RPNKEACNTV 264
                       +   EL LELTLGM+PVSRA +HVIPMKKRKIEA    RPN EACNTV
Sbjct: 241 QKRLGHGDGTVPIPQSELALELTLGMKPVSRA-EHVIPMKKRKIEADVGLRPNNEACNTV 300

[Close]

BLAST of Sed0012384 vs. ExPASy TrEMBL
Match: A0A6J1KC77 (LOB domain-containing protein 41-like OS=Cucurbita maxima OX=3661 GN=LOC111492566 PE=3 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.2e-109
Identity = 225/309 (72.82%), Postives = 239/309 (77.35%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSENCSIRPCLQWIK+ ESQANATVFLAKFYGRAGLMNLINAGP+H
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLINAGPEH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRPAIFRSLLYEACGRIVNPIYGSVGLLWS +W LCQAAVEAVLKGAPI PIN EAAATG
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSSNWHLCQAAVEAVLKGAPIIPINFEAAATG 120

Query: 121 DGPPLKAYDIRHVSKDENSAAS-----TRPVKTRCRFKRSA---KPSRGI---------- 180
           DGPPLKAYDIRH+SKDENSAAS      R V+TRCRFKRSA   K S GI          
Sbjct: 121 DGPPLKAYDIRHISKDENSAASNDGGANRRVRTRCRFKRSAVKDKESTGIVSAVAESTRR 180

Query: 181 --ASPEFNRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPPP---------- 240
              S E NRSSSG+SSLSHQSDSPHLEH+SKE++SMIS E A VSP  P           
Sbjct: 181 LFTSTEINRSSSGESSLSHQSDSPHLEHESKETESMISVETADVSPLSPSSAFFRSGSSH 240

Query: 241 ------------VLMADKELGLELTLGMEPVSRAQQHVIPMKKRKIEA----RPNKEACN 264
                       + + + EL LELTLGMEPVSRA QHV+PMKKRKIEA    RPNKE CN
Sbjct: 241 VQRKFTNHDGGRMTIPESELALELTLGMEPVSRA-QHVVPMKKRKIEADGGLRPNKETCN 300

[Close]

BLAST of Sed0012384 vs. TAIR 10
Match: AT3G02550.1 (LOB domain-containing protein 41 )

HSP 1 Score: 290.4 bits (742), Expect = 1.4e-78
Identity = 162/252 (64.29%), Postives = 192/252 (76.19%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSE+CSIRPCL WIK+ E+QANATVFLAKFYGRAGLMNLINAGP+H
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRP IFRSLL+EACGRIVNPIYGSVGLLWSG+WQLCQ AVEAV+KG P+  I ++AA  G
Sbjct: 61  LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120

Query: 121 DGPPLKAYDIRHVSKDENSAAST------RPVKTRCRFKRSAKPSRGIASPEFNRSSSGD 180
            GPPLK YDIRH+SKD+NSAA+       +  KTR R KR +  +    S   +  +S D
Sbjct: 121 QGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTR-RAKRVSTVAIQAESEGKSDEASHD 180

Query: 181 SSLSHQSD--SPHLEHQSKESQSMISGEAAVVSPPPPPVLMADKELGLELTLGMEPVSRA 240
           SSLSHQS+  + H E +SKES+S +S   A      PP +    E+ L+LTL +EPVSRA
Sbjct: 181 SSLSHQSEIVAAH-EGESKESESNVSEVLAF----SPPAVKGSGEIKLDLTLRLEPVSRA 240

Query: 241 QQHVIPMKKRKI 245
             HV+P+KKR+I
Sbjct: 241 -YHVVPVKKRRI 245

[Close]

BLAST of Sed0012384 vs. TAIR 10
Match: AT1G67100.1 (LOB domain-containing protein 40 )

HSP 1 Score: 280.8 bits (717), Expect = 1.1e-75
Identity = 160/266 (60.15%), Postives = 184/266 (69.17%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MRMSCNGCRVLRKGCSENCSIRPCLQWIK++ESQANATVFLAKFYGRAGLMNL+N GPDH
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATG 120
           LRPAIFRSLLYEACGRIVNPIYGSVGLLWSG+W LCQAAVEAV++G+P+TPI  +AA TG
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG 120

Query: 121 DGPPL--KAYDIRHV-SKDENSAASTRPVKTRCRFKRSAKPSRGIASPEFN-RSSSGDSS 180
             PP   K  DIRHV S+DEN       VK R         SRG    E N RS S +SS
Sbjct: 121 QAPPFNNKLCDIRHVSSRDEN-------VKRR---------SRGACKEERNVRSLSHESS 180

Query: 181 LSHQSDSPHLEHQSKESQSMISGEAAVVSPPPPPVLMADKELGLELTLGMEPVSRAQQHV 240
           LSH+S     E  ++E ++ I                     GLELTLG+EP++R    V
Sbjct: 181 LSHESPVSSEETTTEEPKTWI---------------------GLELTLGLEPLARGNHVV 229

Query: 241 IPMKKRKIE---ARPNKEACNTVLGL 260
           +PMKKRK+E      +++ C   LGL
Sbjct: 241 VPMKKRKLERCGTSEDEDTCKIELGL 229

[Close]

BLAST of Sed0012384 vs. TAIR 10
Match: AT1G68510.1 (LOB domain-containing protein 42 )

HSP 1 Score: 215.3 bits (547), Expect = 5.8e-56
Identity = 129/242 (53.31%), Postives = 162/242 (66.94%), Query Frame = 0


Query: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDH 60
           MR+SCNGCRVLRKGC+++C+IRPCLQWIK+++SQANAT+FLAKFYGRAGL+NLI +GPDH
Sbjct: 1   MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60

Query: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPI--TPINSEAAA 120
           LRPAIFRSLLYEACGRIVNP+ GSVGL+WSG+W  CQAAV+AVL G PI  TP+ S +A+
Sbjct: 61  LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120

Query: 121 TGDGPPLKAYDIRHVSKD--------ENSAASTRPVKTRC---RFKRSAKPSRGIASPEF 180
               PP + YDIRHV+KD        EN A      K++    RFKR +    G  S + 
Sbjct: 121 HQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKRESVNQLGECSHDM 180

Query: 181 NRSSSGDSSLSHQSDSPHLEHQSKESQSMISGEAAVVSPPPPPVLMADK----ELGLELT 226
            +  S  SS +H     H   ++ ES+       A  +   P +   D+    E+GLEL 
Sbjct: 181 WQLPS--SSATH--GYGHFTLENVESR-----REAPFNQSSPNLGFDDQVDINEVGLELR 233

[Close]

BLAST of Sed0012384 vs. TAIR 10
Match: AT5G67420.1 (LOB domain-containing protein 37 )

HSP 1 Score: 177.9 bits (450), Expect = 1.0e-44
Identity = 75/110 (68.18%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDHLR 62
           MSCNGCRVLRKGCSENC +RPC+QWI+T+++Q +ATVF+AKF+GRAGLM+ I+A PD  R
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPI 113
           PA+F+SLLYEACGR VNP+ G++G+LW+G+W +CQAAVE VL+G  + PI
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPI 110

[Close]

BLAST of Sed0012384 vs. TAIR 10
Match: AT3G49940.1 (LOB domain-containing protein 38 )

HSP 1 Score: 175.3 bits (443), Expect = 6.7e-44
Identity = 94/189 (49.74%), Postives = 124/189 (65.61%), Query Frame = 0


Query: 3   MSCNGCRVLRKGCSENCSIRPCLQWIKTSESQANATVFLAKFYGRAGLMNLINAGPDHLR 62
           MSCNGCRVLRKGCSENC +RPC+QWI++ E+Q +ATVF+AKF+GRAGLM+ I+A P+   
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 63  PAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPI----NSEAAA 122
           PA+F+SLLYEACGR VNP+ G+VGLLW+G+W +CQAAVE VL+G  + PI    N    A
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFA 120

Query: 123 -----TGDGPPLKAYDIRHVSKDENSAASTRPVKTRCRFKRSAKPSRGIASPEFNRSSSG 182
                T D       ++ ++ K ++S    R +   CRF  S   SR  ASP   +  S 
Sbjct: 121 GFPSPTSDEASEICTEMLNLRKADDS--GDRNIYHHCRFSSSRSRSRSTASPPKRKRLSS 180

The following BLAST results are available for this feature:

BLAST of Sed0012384 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607034.1	1.8e-112	74.11	LOB domain-containing protein 41, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_008461588.2	7.0e-112	76.24	PREDICTED: LOB domain-containing protein 41 [Cucumis melo]	[more]
XP_022948958.1	2.0e-111	73.14	LOB domain-containing protein 41-like [Cucurbita moschata] >XP_022948959.1 LOB d...	[more]
XP_004145641.1	3.5e-111	75.91	LOB domain-containing protein 41 [Cucumis sativus] >KAE8650578.1 hypothetical pr...	[more]
XP_038899244.1	4.6e-111	76.41	LOB domain-containing protein 40 [Benincasa hispida]	[more]

BLAST of Sed0012384 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M886	2.0e-77	64.29	LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 S...	[more]
Q9ZW96	1.6e-74	60.15	LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 S...	[more]
Q9CA30	8.2e-55	53.31	LOB domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=LBD42 PE=1 S...	[more]
Q9FN11	1.5e-43	68.18	LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 S...	[more]
Q9SN23	9.4e-43	49.74	LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 S...	[more]

BLAST of Sed0012384 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CEU1	3.4e-112	76.24	LOB domain-containing protein 41 OS=Cucumis melo OX=3656 GN=LOC103500157 PE=3 SV...	[more]
A0A6J1GAR7	9.9e-112	73.14	LOB domain-containing protein 41-like OS=Cucurbita moschata OX=3662 GN=LOC111452...	[more]
A0A0A0LCG6	1.7e-111	75.91	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G278920 PE=3 SV...	[more]
A0A6J1J6I5	3.8e-111	74.59	LOB domain-containing protein 41 OS=Cucurbita maxima OX=3661 GN=LOC111482207 PE=...	[more]
A0A6J1KC77	1.2e-109	72.82	LOB domain-containing protein 41-like OS=Cucurbita maxima OX=3661 GN=LOC11149256...	[more]

BLAST of Sed0012384 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02550.1	1.4e-78	64.29	LOB domain-containing protein 41	[more]
AT1G67100.1	1.1e-75	60.15	LOB domain-containing protein 40	[more]
AT1G68510.1	5.8e-56	53.31	LOB domain-containing protein 42	[more]
AT5G67420.1	1.0e-44	68.18	LOB domain-containing protein 37	[more]
AT3G49940.1	6.7e-44	49.74	LOB domain-containing protein 38	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017414	LOB domain-containing protein	PIRSF	PIRSF038155	AS2	coord: 149..262 e-value: 6.0E-4 score: 17.9 coord: 1..160 e-value: 7.5E-86 score: 286.9
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 4..103 e-value: 3.3E-24 score: 85.3
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 3..109 score: 17.134335
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..208
None	No IPR available	PANTHER	PTHR31304	LOB DOMAIN-CONTAINING PROTEIN 38	coord: 1..259
None	No IPR available	PANTHER	PTHR31304:SF9	LOB DOMAIN-CONTAINING PROTEIN 40	coord: 1..259

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012384.1	Sed0012384.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression