Sed0012372 (gene) Chayote v1

Overview


Name	Sed0012372
Type	gene
Organism	Sechium edule (Chayote v1)
Description	CCHC-type domain-containing protein
Location	LG11: 7552195 .. 7561651 (-)
RNA-Seq Expression	Sed0012372
Synteny	Sed0012372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTTGGCTTGTGGCAAGTACAAGTCAAAGATGTGTTGATACAATCTGGATTACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGGTGATGGTAGTTCAACTGAGTCCAGTGGTGGTTCCAGCAAAGGTTCTAAGAAGTCCAGCATGAATGATGACGAATGGGAGGAAATGGATTTGAGAGCTGCAAGTGTCATCAGATTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATGGAATATCAGCAGCCAAAGAGCTTTGGGAGAAGCTTGAAGCGATGTATCAGGCAAAAAGCATTTCAAATCGGTTGTACCTAAAGGTGCAATTTTACACATTGCGAATGGAAGAAGGTACGAAAATCTCAGATCATCTTAGTGTTCTCAATGGTGTTATCTCTGAGCTGGAGGTAATTGGTGTAAAGATAGAAGACGAGGATAAGACACTGAGACTTATCTTGTCACTTCCCCCTTCTTATGAACGTATGAAGCCAATCTTGATATACGGAAAATAGTCTTTAAATTTTGCAAAAGCTACTAGTAAACTTCTTTTAGAAGAAAGAAGGCTGAAGCTTGATGAGCGTACTTCACAAGAGGATTCAACACTGATAGTTGGAAATTGGAAGAAGAAAAACTTTGTGCAAAAGAGAAGTTGCTGGGAATGTGGACAACCTGGTCACATGAGAAGAAATTGTCCTAACAGAGCAAGTTCGTCAAAGGGCTCTGGTTCGGATGCTGACGTGGTCTCTCTCGTTTGGGGATCTGGTGATGCCCTCTGAAGAAAGAAAGAAATTATTCTCATGGTATGTCCGCTTTGCCATGGTAGAGGATATGATGTCAGCGGTTCCACAAGTTTGCACACATGCGTTGGCTTGGCGGTGCAAGGTGTGTGGTGGAAGTTATGTCGATGGCTAGAGAACTTCTAGGTAAGCCAAGTAAGTGGAAGTTGCACCATAAATTTTTGCAAGGTGTATCGACATGTGACGAAGAAGAAAAATCTTGGAATGTGAGATTTCAAGTGTTATACTTTTTTATGGTGGAGTATGTTATAATTCTCAGGTCCACTTAACAATCTCACCTAAGCAACAACCTGATACCACGAGCATGGTATCCTTACCACCTCACTAAGCCTTACAACATCCACCTGGAGTCTAACTTTTCCAAAAACTGAGCACCAGATCCCCAAAGCAAACCCTACATGGATCTGACTCTCTCGCCACAGAACGAACCACACAAAACACACTTGTGTGCACAACTCCCAACCTTCATTTAGCGATCCAAGTCTAACAAATGCTTTTCCCAAAAGCCACACTAGCTCCTGGCAGAGATACAACCAATCAACGGAACACCCAAAGTTCCATCTCCACACGATGCTCGAAGCTGTGGCAACCTTGCTCCACCAAAGCATAACCACTTCAAACCAAACTTACTTTATACCAAGCCTCTACCAAGGGTGCTTACCCATAAGGCATCCAACTCCTCTCACAAGGCATCCTACTTACCTCATAGGCTTCCAACTCATGGTCCCTCAACTGGACCCAACTTGCTTCTACGATGTTCAACTCTCCTGAGGTTTAGGCACTCGAAGGTAGTTGACCGCACTACCAACCACAAAGATCTCTTGGCCTTAACACTAGCGTGAGATGCACGCGCACTAACACTTACCAACCGCCAACCTGCTTGACTTACTCAACCTCTAGTAACACTGGGAAAGGCTCCGGCTCCTCTCGAACATCCTTTCGCTTGAAGTCTTTCGATTACCACTGAACTAGCCCTTTTTGCACGACCTACACAGGTGCAACTACCATAAATGGATCCAAGGCTAAAGGAGTACGCTAAACTCCGAACGACATAGAACCATCTGCTATGCCCATGCCAAACTCAGGCCTGAACCAGATTTAGTGCCAAAGCGGCACACCAACCAATGCACCTCAAGTGCCACTACTACCAAATCCACATCTTACTACAACGGGGCCAACAAGGTCACAATCTCAAGTGACACGAACTCTGGCTCGGCATACAAGGGCTCAACTCCAACAACCATGCCTAAGGCATCTCATCAAGTGAAGGCTCTGGCCTACTCTTGCATCTCCACATGATGCTCAACAAACTCTGGTCGGCTCTCTCAACATGCAGCAGCTAGCCCTACTCTAGGGCTTACCAAAAGAAGAGTGTTCATTTTTTTTTTTTTTACCAAACAACTGAGGAAACCACCAACGGACCCAGTCCGTAGAGAACACTGCTTGCTGCACCCTTACCTACTGAGGTTCCGGCCATCGGCTGCAAACAACCACACTTCACAGAAGCACAAAGATGCCTCATCAACCTCCTCGAAGGCTACCAACTTTGCAACCACTCTCTGGGCAACCAAATAATCTAACAAGGCTCAAGATCAGCACTTGAGCTACCCAGGCTAGTCCACACGGGGACCTGCTCCACCAACATCCACATCAGCACAACCACAGCTAACTTCTCTCTTGGAGTGGCATTCCAAGGCAAAGCACCTCCACCCTCTCACTAGGGGAAAACCATCAATTGGGCCACAGTTGGCCTATGGGAGTCCAATCTCTACCTCCCCCTGGAACGATGTCCCAGGGCATCCGAACCTACCTGGATACCACAACAAGCCACAACATACATCACACACTGCGGGAAGTTGGCATGATGGCGCTCTAAACCCAAACCAATAACGAGTCAGAACCTGCTCGTCTCCGCTCCACAACACTACACAAGGCATACACTAGATGACAGGTATTGTAAATTCTTAACCCTTTTTCTACAACAAATAGTTCTTTGGGAATGTGGACAACTGGTCACATGAGAAGAAATTGTCCTAACAGAGCAAGTTCGTCAAAGGGCTCAGTTCGGATCTTGACGTGGTCTCTCTCGTTTGGGGATCCGTGATGCCCTCTCAAGAAAGAAAGAAATTATTCTCATGGTATGTCCGCTTTGCCATGGTAGAGGATATGATGTCAGCGGTTCCACAAGTTTGCACACAGGCATTGGCTTGGCGGTGCAAGGTGTGTGGTGGAAGTTATGTCGATGGCTAGAGAACTTCTAGGTAAGCCAAGTAAGTGGAAGTTGCACCATAAATTTTTGCAAGGTGTATCGACATGTGACGAAGAAGAAAAATCTTGGAATGTGAGATTTCAAGTGTTATACTTTTTTATGGTGGAGTATGTTATAATTCTCAGGGTTGAGAATTATGATTGTCAGAGAAGACAATGTTGTAGCAAAAGATGCGGATTCTTCAAATATCTCGCCAAGGTGGAATTTGTTGGGATTTTGGCAAAATATTAGAAGTGAATTTGTCTCACATCGGAAAGATGCAAGGTAGTGGTGTGCTCCAAGCACTATAAAAGGAACATAAAGCTTTGGTTTCAAAACATCCAAGTTAAAAGCACTTTAGTGTATTGACTCTAGTTAAATTCCTTTGTATTCTCTTATGAAGATTGGGGTAAAGGGCGTGAGTATTATAAGCTTTGAAGAGAGTGTTTATGTAATTGGGGTCGGGAGAGAGAATGAATTTTGTGTGATTGTACAATTTTTCACATAGTAGAAATTCTTTTCGTCCGTGGTTTTTTCTCCAATTTGGAGTATTTCCACGTAAATCCTTGTGTCTTCTATTTTTTTATTTTCTTTTAATTTCTCAATTATTTTATGCTTATCCATGCTATTATTTAGGGAAGGGTTTTTTTCCCAACACTCTTCTTTTAGAGTCATGGAGTATCATTAACACGAAAAAGAGTGAAAAATCTCTCTCGAATATAGCCATCAACATCCACGAATCTTAAAACAAGTGCAACTTGTTCTCTTCTTGACTTGTCTCGTGCCTCATCCACCATAATACAAAATTTTGCATCCACCAAATCATTACGAATCTTATCTTTCATTTTATTTGAAAGAATGTGTTGAATCTCCTTTTGAATACTTGGTGCATTATATTTTACATTGCCTGGAGCATTATCTAAAACAACTTTAGCAACTTCCTCATTATATGTTGCTAAAAGTTTTATAACGTCTCATACCATGTCCACAGAGACATACAAATGTCTCGGGGTAGCCTGGCCATCTATCATGAACCCACCACGAGTGGGCAAAACACAAAGCATCCTTAAACCTCGGGTCAAGACAACGACAAACAATTCGTGTTAGCAAGGGCATACTCGAATGTCGAAAAAATCACCTGACCCTGTCAGGGAGAGCCACGAGTGAGGGAAATTGCAGGGTTTTTAAACCACGGGCTAGGGGCGTGATCTGCTAACCCCAGCATGCAGGGATTGACCTGTCTGCAAACAACATCCCATAATGCATGCAGGCTCACCGACAAACATCCCTTCGCGCCATCATCTATCCCAATGACCTCTTCTAATAGGTGTCATGGTCAAGCGAGTCATGACTACTCTTTAGCCCACGTACTTGGTTGTTATAGTAGGTGTCTGGGACAAACGAGTCATGAATGGCTCCCCTTCCCATGTACTATAACGAAAAAAATAGTGAAAACCCATGCACAAAGCATGTGGGGTTTCACGAGTATAACAAAAAAGATATAACTAGCGCTAGAGTCACACAAGATCTAGCCTAGCCTAGACAAGTGCAACTTCCCCACCCGAGGGTTGGTGCAACCCACAACGTGCACTCAACATCCAAGGAACTCGTTGTTTAGCATACAATGTGATACATGGATAATATCTGACCCCTTGGTTAGATTTAAGTGTCTCGAAGTAAAGAGGATCCATATCCTCGCTCGATTCCTAAGAGCACTAGCGAGTCACATGATTAACATAATATTGAATCACACAACCACGAGTCCTAAAAATAGGTGAGCTAGCTACTTCTTTAAGTGGTCAACACGATCACTGCACCTAGTTATTCTAATGTTGAACATAACAAAAATACGAACTAACCCTTAGGCAACAAATCGAGGCGAGCATATAAACATGGCGGTGTATATAGTCAAATATGGATGAAACCGACAACACCAAAACATGCATAAATTTAAGGCAATCCAGTCACTCGAAAGGTTAAAAAGATAAGCTGTAAGGGACCGACCCGAATGGGGCACTAAATGGACCCTTACCCCAATGCATGCATTCAAAGTAAAGGACATTTAAACAGACATGATTTCGGATTCCAATTAAAACAAAACATTCAAAATAACCCCTTTAAAAACTAGACAATTTCCCTGGAACCTGTCCCTGTTTCCAAGCACCTGTTCCAAGATAAATACATTCTCAAAGTATACTCCGATCGAGAGATTTCTTAAAATCATTCAAAACATGTCTAGATACAATAATTTGGAATCCACAAAAGATTCGAGAAAACATCCTAGGGCTCGTGTGCCGCTATATGCATTAAGGGGAAAATAAAACATAAAGAGTCATAACACAAAATCGAGTTTGATGATTGAGCCCCATGATCACGACTCCTCCTTGACCATCTGTCTCTATAACTTGGTTACTGTGGAAAAACCACGTAAGGGTGAGTAACGAATTACTCAGTAAGAATCCCCAACCGAGGTACAATACGATATACATGGTCATCTCGATGAGCGTATGCAAGCTATGAATATAAACACAGAATAGAGCACATAGCTTAGCCCACACTTGGGCCTCGGATGCCAATTTAGGGTCTTAGTCGGAATAATATCACCACACAGTCCAATACATAAGTCGCGCCTATACGAGAAACAAGTCCGGCCTCGGGCTCTCTCATCGACGAAAGGTACAGCGGCTCACAATCCCGAGGAGCTCTCGATCGTATTTGTAATGGCGTAAGCATGCACCGCGTGCATCAGAGACTATGGAAGTGCCGGGTCAGAGGCAAGTCGCCCATATCCGATCCACCACGCCTAACTAAATCTTTGGATCGGTGTCACCGACATAGGGGTGTGAGACTTGGACACGTAAACTATGTCGGCTGAACCACCGCACTGGGCCAAGGGCGGTCATGGTAGGCTTACACCAGAAGCCATCCTTGCCTTAACAGTGGCAATCGGGGGCTACCGCCAACCATGCGAGGACATGCGGCTGCCGGGGCGAGGCAATGCGAGTCATCATCCCGACCGTTGGGGCATTAACAAGCCGCCACCCTCACCCAAGATTGCGGGGCCTACCGGCAGGTTAGCTAATCCTCACGGGGTCCGGGGACGGAATGACTTGCTCGGACGTCCCCCGCCATGGATGCAAGGTTCTTTATGCATCGGGCACGGATGATGCTATCTGCACCGCAATTCTAACTTGCCCTAGCAAGCGACAAACAATTCCATAAAATCCAATACGTGCTCAATAAGAATACAACGAGCCTAGCATGATACTACGAAGCAAGGAACAGATACGAGCATGCTAGAGAGAAACAACCTAGCATGGATTAACATGAGAATTAAACCAGGAAAATCATGCTAATCGGGAATTCAGAATAGAATACCTAGCTATACATGTCAATAAACACAAACAAGCAATCAATCAACAATCACATATAATATCGCAGGGTCCACACAACTCCGGTAAGAAATCCTTACCTTGGCCGGGGACAATTTGACACGAAATCCTAAGCGGCGAACGAACCCGAACTAGCTACCGAGAACCTATCAATCACAACAAAAATCACACAATAGGCCTAAATATAATAAAATAAATGAGGCTCAAGACGGAGCAACTCACGAGGCACGACGAACGCACGAACGAGCCGATTGCACGAACGGGGCAGCAACGGGGCTGGCTGGGCGAGCTGGGGCGCAGAAATGGACGCATGGGCGCGCGGACGCGAGCTGCACGCGGACGAACAGAGCGTTGGCGATGCGGCTCGGCTGAGCGTTGACGAGTGAGGGGCGAGGCTATGGCGGAAAAATCCTTAACAAACCGACGGCAGCAAACTGCCAAACCCAGAAAGAAACGGCTCCTACGAGCAAACAACCGAAGGATAGAGAGCTCCACATACACTCACTGTCTTGCTCCATTAAAGCGACAAGATCAAAATCTCACGGAGTAGCAACAAGGGTCTACCACGGATTGAACCTCCAAATACCAACGAGGCAACTCTCAACTTTCCTGGAAACAGGAAGACAACCAACAAGGCACGAACCATTCGCCCCACGAGAAAAACTGACTTCAAGCAATTTCAATCCACACCTTGGTCAACACCAAGCATCAACTGGTCACCATACCGGAACCAATCCGGACTCTACTCCAAACAAATTTAACTTGCTAGGCTACCAAGACTGCTAGCAATTCCCCCGAGGCTACAAACTACACGGCTTCAACTTGCCAACTGAAACTCACTATCAGGGCCTGATTGAGCTCTAGAGAGGCTCTCCGCAACCTAGGGTTCTTCGACAACCCTCGACACCCACTGCCAACTAACTGCCTACAGCCAACTGCCTGCACAACAACAACTCATTTTTCCAGCAACACAACCATGCTGGCCAACTCCAACTCCTTGGGAACCAAGAGGACCCGAAACGCTACCGAATGCGTCATCCTCCTACTCAGACCTCAACCACAACATAACTCCTACCCAAGGAGGGATCCGAACAACTCTCTCAGTCATGACGATCAGCAAGAAGATCCGCCAACCAAGCTTAGGTCCACTTAACAATCTCACCTAAGCAACAACCTGATACCACGAGCATGGTATCCTTACCACCTCACTAAGCCTTACAACATCCACACGAGTCTAACTTTTCCAAAAAGCGAGCACCGGATCCCCAAAGCAAGCCCTACATGGATCTGACTCTCTCGCCACAGAACGAACCACACAAAACACACTTGTGTGCACAACTCCCAACCTTCATTTAGCGATCCAAGTCTAACAAATGCTTTTCCCAAAAGCCACACTGGCTCCTGGCAGAGTTACAACCAATCAACGAAACACCCAAAGTTCCATCTCCACACGATGCTCGAAGCTGTGGCAACCTTGCTCCACCAAAGCATAACCACGTCAAACCAAACTTACTTAATACCAAGCCTCTACCAAGGGTGCTTACCCATAAGGCATCCAACTCCTTTCACAAGGCATCCTACTTACCTCATAGGCATCCAACTCATGGTCCCTCAACTGGACCCAACTTGCTTCTACGATGTTCAACTCTCCTGAGGTTTAGGCACTCGAAGATAGTTGACCGCACTACCAACCACAAAGATCTCTTGGCCTTAACACTAGCGTGAGATGCACGCGCACTAACACTTACCAACCGCCAACCTGCTTGACTTACTCAACCTCTAGTAACACTGGGAAAGGCTCCGGCTCCTCTCGAACATCCTTTCGCTTGAAGTCTTTCGATTACCACTGAACTAGCCCTTTTTGCACGACCTACACAGGTGCAACTACCATAAATGGATCCAAGGCTAAAGGAGTACGCTAAACTCCGAACGACATAGAACCATCTGCTATGCCCATGCCAAACTCAGGCCTGAACCAGATTTAGTGCCAAAGCGGCACACCAACCAATGCACCTCAAGTGCCACTACTACCAAATCCACATCTTACTACAACGGGGCCAACAAGGTCACAATCTCAAGTGACACGAACTCGCTCAAGATACAAGGGCTCAACTCCAACAACCATGCCTAAGGCATCTCATCATCAAGTGAAGGCTCACGGCCTACTCTTGCATCTCCACATGATGCTCAACAAACTCTGGCCGGCTCTCTCAACATGCAGCAGCTAGCCCTACTCTAGGGCTTACCAAAAGAAGAGTGTTCATTTTTTTTACCAAACAACTGAGGAAACCACCAACGGACCCGGTCCGTGAGAGAACTTGCTTGCGCACCCTTACCTACTGTGGTTAAAACTTCTTGGGTGCAAACAACCACACTTCACGAAGCACAAAGATGCCTCATCAACCTCCTCGAAGGCTACCAACTTTGCAACCACTCTGGGCAACCAAATAATCTAACAAGGCTCAAGATCAGCACTTGAGCTACCCAGGCTAGTCCACACGGGGACCTGCTCCACCAACATCCACATCAGCACAACCACAACTAACTTCTCTCTTGGAGTGGCATTCCAAGGCAAAGCACCTCCACCCTCTCACTAGGGGAAAACCATCAATTGGGCCACAGTTGGCCTATGGGAGTCCAATCTCTACCTCCCCCGGAACGATGTCCCGGGGCATCCGAAGTTCTACTACTGGATACCACAACAAGCCACAACATACACATCACACATCTGCGGGAAGTTGGCATGATGGAGCTCTAAACCCAAACCAATAACGAGTCAGAACCTGCTCGTCTCCGCTCCACAACACTACACAAGGCATACACTAGATGACAGGTATTGTAAATTCTTAACCCTTTTTCTACAACAAATAGTTGCTGGGAATGTGGACAACCTGGTCACATGAGAAGAAATTGTCCTAACAGAGCAAGTTCGTCAAAGGGCTCTGGTTCGGATGCTGACGTGGTCTCTCTCGTTTGGGGATCTGGTGATGCCCTCTGA

mRNA sequence

ATGAATTTTGGCTTGTGGCAAGTACAAGTCAAAGATGTGTTGATACAATCTGGATTACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGGTGATGGTAGTTCAACTGAGTCCAGTGGTGGTTCCAGCAAAGGTTCTAAGAATTGCTGGGAATGTGGACAACCTGGTCACATGAGAAGAAATTGTCCTAACAGAGCAAGTTCGTCAAAGGGCTCTGGTTCGGATGCTGACGTGGTCTCTCTCGTTTGGGGATCTGGTGATGCCCTCTGA

Coding sequence (CDS)

ATGAATTTTGGCTTGTGGCAAGTACAAGTCAAAGATGTGTTGATACAATCTGGATTACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGGTGATGGTAGTTCAACTGAGTCCAGTGGTGGTTCCAGCAAAGGTTCTAAGAATTGCTGGGAATGTGGACAACCTGGTCACATGAGAAGAAATTGTCCTAACAGAGCAAGTTCGTCAAAGGGCTCTGGTTCGGATGCTGACGTGGTCTCTCTCGTTTGGGGATCTGGTGATGCCCTCTGA

Protein sequence

MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQPGHMRRNCPNRASSSKGSGSDADVVSLVWGSGDAL

Homology

[Close]

BLAST of Sed0012372 vs. NCBI nr
Match: XP_022139673.1 (uncharacterized protein LOC111010521 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-11
Identity = 43/53 (81.13%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSK 54
           +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK S DG   ESSGGSS+GSK
Sbjct: 313 INFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPMESSGGSSRGSK 365

[Close]

BLAST of Sed0012372 vs. NCBI nr
Match: XP_022154929.1 (uncharacterized protein LOC111022075 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1   MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKG 52
           +NFGLWQVQVKDV+IQSGLHKALKGRPS   SEK SGDG   ESS GS +G
Sbjct: 163 INFGLWQVQVKDVMIQSGLHKALKGRPSEDASEKLSGDGGPMESSDGSDRG 213

[Close]

BLAST of Sed0012372 vs. NCBI nr
Match: KAF6150548.1 (hypothetical protein GIB67_030349 [Kingdonia uniflora])

HSP 1 Score: 67.0 bits (162), Expect = 9.9e-08
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 1   MNFGLWQVQVKDVLIQSGLHKALKGRP---SGGDSEKSSGDGSSTESSGGSSKGSKNCWE 60
           +NFGLWQ+ V+D+LIQ GL KALKG+P   +  + + S    S  +S     KG+  CW 
Sbjct: 21  INFGLWQIHVQDILIQGGLRKALKGKPIPKTSVEGKNSVMVVSGKKSFNRFRKGT--CWS 80

Query: 61  CGQPGHMRRNC----PNRASSSKGSGSDADVVSLVWGSG 93
           CGQ GH R +C     NRASS++GS +D + ++ V  +G
Sbjct: 81  CGQSGHYRSDCKAGKSNRASSARGSENDINKLATVTSNG 117

[Close]

BLAST of Sed0012372 vs. NCBI nr
Match: ESR45251.1 (hypothetical protein CICLE_v10003098mg [Citrus clementina] >GAY69372.1 hypothetical protein CUMW_271400 [Citrus unshiu])

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-05
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 1  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQ 60
          +NFGLWQVQVKDVLIQSGLHKALKG+P             S  S+ GS K +K  WE  +
Sbjct: 21 INFGLWQVQVKDVLIQSGLHKALKGKP-------------SPASNSGSGKTTKELWEKLE 78

Query: 61 PGHMRRNCPNR 72
            +  ++  NR
Sbjct: 81 KLYRTKSISNR 78

[Close]

BLAST of Sed0012372 vs. NCBI nr
Match: PON66942.1 (Pol-like polyprotein/retrotransposon [Trema orientale])

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-05
Identity = 30/38 (78.95%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1  MNFGLWQVQVKDVLIQSGLHKALKGRPS--GGDSEKSS 37
          +NFGLWQ+QVKD+LIQSGLHKALKGR +  G DSEKSS
Sbjct: 21 INFGLWQIQVKDLLIQSGLHKALKGREALKGRDSEKSS 58

[Close]

BLAST of Sed0012372 vs. ExPASy TrEMBL
Match: A0A6J1CG82 (uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010521 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.6e-11
Identity = 43/53 (81.13%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSK 54
           +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK S DG   ESSGGSS+GSK
Sbjct: 313 INFGLWQVQVKDVLIQSELHKALKGRPSEGASEKLSDDGGPMESSGGSSRGSK 365

[Close]

BLAST of Sed0012372 vs. ExPASy TrEMBL
Match: A0A6J1DNQ5 (uncharacterized protein LOC111022075 OS=Momordica charantia OX=3673 GN=LOC111022075 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.8e-10
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 1   MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKG 52
           +NFGLWQVQVKDV+IQSGLHKALKGRPS   SEK SGDG   ESS GS +G
Sbjct: 163 INFGLWQVQVKDVMIQSGLHKALKGRPSEDASEKLSGDGGPMESSDGSDRG 213

[Close]

BLAST of Sed0012372 vs. ExPASy TrEMBL
Match: A0A7J7M716 (Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_030349 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.8e-08
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 1   MNFGLWQVQVKDVLIQSGLHKALKGRP---SGGDSEKSSGDGSSTESSGGSSKGSKNCWE 60
           +NFGLWQ+ V+D+LIQ GL KALKG+P   +  + + S    S  +S     KG+  CW 
Sbjct: 21  INFGLWQIHVQDILIQGGLRKALKGKPIPKTSVEGKNSVMVVSGKKSFNRFRKGT--CWS 80

Query: 61  CGQPGHMRRNC----PNRASSSKGSGSDADVVSLVWGSG 93
           CGQ GH R +C     NRASS++GS +D + ++ V  +G
Sbjct: 81  CGQSGHYRSDCKAGKSNRASSARGSENDINKLATVTSNG 117

[Close]

BLAST of Sed0012372 vs. ExPASy TrEMBL
Match: V4T6T3 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003098mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 1  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQ 60
          +NFGLWQVQVKDVLIQSGLHKALKG+P             S  S+ GS K +K  WE  +
Sbjct: 21 INFGLWQVQVKDVLIQSGLHKALKGKP-------------SPASNSGSGKTTKELWEKLE 78

Query: 61 PGHMRRNCPNR 72
            +  ++  NR
Sbjct: 81 KLYRTKSISNR 78

[Close]

BLAST of Sed0012372 vs. ExPASy TrEMBL
Match: A0A2H5QXN2 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_271400 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 1  MNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGSSTESSGGSSKGSKNCWECGQ 60
          +NFGLWQVQVKDVLIQSGLHKALKG+P             S  S+ GS K +K  WE  +
Sbjct: 21 INFGLWQVQVKDVLIQSGLHKALKGKP-------------SPASNSGSGKTTKELWEKLE 78

Query: 61 PGHMRRNCPNR 72
            +  ++  NR
Sbjct: 81 KLYRTKSISNR 78

The following BLAST results are available for this feature:

BLAST of Sed0012372 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139673.1	7.4e-11	81.13	uncharacterized protein LOC111010521 [Momordica charantia]	[more]
XP_022154929.1	1.8e-09	76.47	uncharacterized protein LOC111022075 [Momordica charantia]	[more]
KAF6150548.1	9.9e-08	43.43	hypothetical protein GIB67_030349 [Kingdonia uniflora]	[more]
ESR45251.1	2.7e-05	49.30	hypothetical protein CICLE_v10003098mg [Citrus clementina] >GAY69372.1 hypotheti...	[more]
PON66942.1	2.7e-05	78.95	Pol-like polyprotein/retrotransposon [Trema orientale]	[more]

BLAST of Sed0012372 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0012372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG82	3.6e-11	81.13	uncharacterized protein LOC111010521 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1DNQ5	8.8e-10	76.47	uncharacterized protein LOC111022075 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A7J7M716	4.8e-08	43.43	Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_030349 PE=4 SV=1	[more]
V4T6T3	1.3e-05	49.30	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003098mg PE=4 ...	[more]
A0A2H5QXN2	1.3e-05	49.30	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_271400 PE=4 SV=1	[more]

BLAST of Sed0012372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 54..70 e-value: 8.3E-5 score: 32.0
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 54..70 e-value: 5.1E-6 score: 26.3
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 55..70 score: 11.004309
None	No IPR available	GENE3D	4.10.60.10		coord: 26..79 e-value: 4.3E-8 score: 34.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..81
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 36..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012372.1	Sed0012372.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding