Sed0012365 (gene) Chayote v1

Overview
NameSed0012365
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
LocationLG01: 18882822 .. 18884854 (+)
RNA-Seq ExpressionSed0012365
SyntenySed0012365
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAGTTTTACTGTTGTAACTTAAATATTCAAGTGTATTCCTTCTATAAATACACTCTTGGGATCATTAATAAAATTCATTTTATTCTTCCCAATATTTCTCTATTTCAAAATGGTATCGGATGATTTTTTTCTCTCTCTTTTAAACGCGTTTTTTTCTTTTCCCATATTAGATGTCAAATTTTCTTGCGTTTTTTTCCATCTCTTCTTCTTCTTCTCCAAAATTAGGGTTCAGCTTCTTCAATCGATCCTCCATGGGCACCACCGAATTTGCTCCGCTTCAACCTGAATCTGCTCCCTCTCTGGTTGGCAGATCTTCCACCGTCTCTGATTCGTCCATTTATGATTTTTTACAGAGTCCATACTCATTCATGTCTCATGATACTTCAAACCTTGTTTTAGTCTCAGATCTACTCAATGAGGACAATTACCTCACTTGGAGTCGCTCAATGCGTCTGGGTTTATCGATCAGAAACAAGCTTGGTTTCGTTGATGGATCGATTAAAAAACTCACAGGTCCTCTGCTCCAATCTTGGATTCGAAGTAACAACATAGTCATCGCCTAGATTCTCAACTCGGTTTCGAAGGAAATTTCTTCGAGCATTCTATTCTCTAAAAATGCTCATGCTATTTGGCTAGATCTAAAAGATCGATTTCAACGCAGACATGGACCTCGCATATATCAATTGAAGAGTGATCCTGCCGTTCTCACTCAAGGTCAGCAGTCTGTATCGTTTTATTTCTCCAAACTCAAGACCATTTGGGATGAATTAGATACGTATCGCCTGAATTTTTCTTGTAATCTCTGTTCGTTTGGAGGAACTAAAGCCATCACCGATTTCTTTCAAAATGAATACCTTATGAGTTTCCTAATAGGGTTAAACGATACATTCGGATCGGCCAGATCTCAAATCCTATTAATGGATCCTATGCGATCGGTGAGTAAGGCATTCACCCTCATAGTTCAAGAAGAGCATCAACACTCAATGCCTCTTCTTCCCACACCTCCTTCATCTCTGATGCTTTCCGTTTCTCAAACTTCAAACTCTATGAAGTCACAGAACTCTACCACTGTCGGGTCTTCACAATCCACTCGATCACGCATAGATTGTTCAGTATGCACTCACTGTGGATTCGTTGGGCACACCATAGATCGTTGTTATAAAATCCATGGTTGCCCCCCTGGGTTCAAGTCCAAGAATGCACGGGATGTGACTTCTACATGGCATTCCTCGGCTGCTCCTTCAAATGTGGCATTAGCCACAACACCCTCACGTTAAGATATTCGAGACTCTACAATTGCACAGTGCCAAAATATTCTTTCTATGTTGCAGACGACTCTTGCCACAACACAATCTTCATCTAAGTCTTCTCGTATCATGTTGCATGTATGGTTCTTTCTACTCCTAATAATATACATACCCTCGATTGGTTTATTGACTCAGGCGCATCCACACACATCTACTATGATATATCTGCTTTTTCGGAATTACATAAGATTCATACCTCTATTGTATTACCTGATAGTACACGCATCAAGTTGAATTTGCTGGCATAGTTGTTTTGTTTGGCATTCTCACTCTTCACAATGTTTTATTTGTACCCCAGTTTAAATACAACTTGGTGTCTGTCAGTGCTCTTACTTCTAATAAACAAATTCTTGTGAATTTTTGTGATGGATTATGCCCTATTCAGGACAAGTGCACTATGAAGATGATTGGCAGGGGTAGCTTACATGATGGCTTGTATGTACTGCACAACACTCATTCTGAAATTGTGGCATCAGTAAAGACAGTTTCTGCAACAACATGGCACGAGAGGCTTGGTCACCCTTCTTTTTCTCGATTAAATGTACTTAAGGATAGTCTTTGTTTTGATTCTTGTAAGTCTCTACATGATATACCATGTGAGATATGTCCTTTTTCAAAACAAAAGAAGCTATCATACGAATGCAATAACAATTTGTCTTTGAATATCTTTGGTCTTATTCATGCTGACACTTGAGGCCTTTTTTCGGTTGCCTCTACTAACAGA

mRNA sequence

GTTAGTTTTACTGTTGTAACTTAAATATTCAAGTGTATTCCTTCTATAAATACACTCTTGGGATCATTAATAAAATTCATTTTATTCTTCCCAATATTTCTCTATTTCAAAATGGTATCGGATGATTTTTTTCTCTCTCTTTTAAACGCGTTTTTTTCTTTTCCCATATTAGATGTCAAATTTTCTTGCGTTTTTTTCCATCTCTTCTTCTTCTTCTCCAAAATTAGGGTTCAGCTTCTTCAATCGATCCTCCATGGGCACCACCGAATTTGCTCCGCTTCAACCTGAATCTGCTCCCTCTCTGGTTGGCAGATCTTCCACCGTCTCTGATTCGTCCATTTATGATTTTTTACAGAGTCCATACTCATTCATGTCTCATGATACTTCAAACCTTGTTTTAGTCTCAGATCTACTCAATGAGGACAATTACCTCACTTGGAGTCGCTCAATGCGTCTGGGTTTATCGATCAGAAACAAGCTTGGTTTCGTTGATGGATCGATTAAAAAACTCACAGGTCCTCTGCTCCAATCTTGGATTCGAAGTAACAACATAGTCATCGCCTAGATTCTCAACTCGGTTTCGAAGGAAATTTCTTCGAGCATTCTATTCTCTAAAAATGCTCATGCTATTTGGCTAGATCTAAAAGATCGATTTCAACGCAGACATGGACCTCGCATATATCAATTGAAGAGTGATCCTGCCGTTCTCACTCAAGGTCAGCAGTCTGTATCGTTTTATTTCTCCAAACTCAAGACCATTTGGGATGAATTAGATACGTATCGCCTGAATTTTTCTTGTAATCTCTGTTCGTTTGGAGGAACTAAAGCCATCACCGATTTCTTTCAAAATGAATACCTTATGAGTTTCCTAATAGGGTTAAACGATACATTCGGATCGGCCAGATCTCAAATCCTATTAATGGATCCTATGCGATCGGTGAGTAAGGCATTCACCCTCATAGTTCAAGAAGAGCATCAACACTCAATGCCTCTTCTTCCCACACCTCCTTCATCTCTGATGCTTTCCGTTTCTCAAACTTCAAACTCTATGAAGTCACAGAACTCTACCACTGTCGGGTCTTCACAATCCACTCGATCACGCATAGATTGTTCAGTATGCACTCACTGTGGATTCGTTGGGCACACCATAGATCGTTGTTATAAAATCCATGGTTGCCCCCCTGGGTTCAAGTCCAAGAATGCACGGGATGTGACTTCTACATGGCATTCCTCGGCTGCTCCTTCAAATGTGGCATTAGCCACAACACCCTCACGTTAAGATATTCGAGACTCTACAATTGCACAGTGCCAAAATATTCTTTCTATGTTGCAGACGACTCTTGCCACAACACAATCTTCATCTAAGTCTTCTCGTATCATGTTGCATGACAAGTGCACTATGAAGATGATTGGCAGGGGTAGCTTACATGATGGCTTGTATGTACTGCACAACACTCATTCTGAAATTGTGGCATCAGTAAAGACAGTTTCTGCAACAACATGGCACGAGAGGCTTGGTCACCCTTCTTTTTCTCGATTAAATGTACTTAAGGATAGTCTTTGTTTTGATTCTTGTAAGTCTCTACATGATATACCATGTGAGATATGTCCTTTTTCAAAACAAAAGAAGCTATCATACGAATGCAATAACAATTTGTCTTTGAATATCTTTGGTCTTATTCATGCTGACACTTGAGGCCTTTTTTCGGTTGCCTCTACTAACAGA

Coding sequence (CDS)

ATGAGTTTCCTAATAGGGTTAAACGATACATTCGGATCGGCCAGATCTCAAATCCTATTAATGGATCCTATGCGATCGGTGAGTAAGGCATTCACCCTCATAGTTCAAGAAGAGCATCAACACTCAATGCCTCTTCTTCCCACACCTCCTTCATCTCTGATGCTTTCCGTTTCTCAAACTTCAAACTCTATGAAGTCACAGAACTCTACCACTGTCGGGTCTTCACAATCCACTCGATCACGCATAGATTGTTCAGTATGCACTCACTGTGGATTCGTTGGGCACACCATAGATCGTTGTTATAAAATCCATGGTTGCCCCCCTGGGTTCAAGTCCAAGAATGCACGGGATGTGACTTCTACATGGCATTCCTCGGCTGCTCCTTCAAATGTGGCATTAGCCACAACACCCTCACGTTAA

Protein sequence

MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRCYKIHGCPPGFKSKNARDVTSTWHSSAAPSNVALATTPSR
Homology
BLAST of Sed0012365 vs. NCBI nr
Match: XP_022154973.1 (uncharacterized protein LOC111022117 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-18
Identity = 59/138 (42.75%), Postives = 87/138 (63.04%), Query Frame = 0

Query: 1   MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQT 60
           M FL+GLN++F   R+QILLMDP  S+ KAF+LI QEE Q  +PL  TP  ++ L+V+Q+
Sbjct: 165 MKFLMGLNESFAHIRAQILLMDPPPSIGKAFSLISQEEQQRVIPLFSTPSPAVGLAVNQS 224

Query: 61  SNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRCYKIHGCPPGFKSKNARDVTS 120
               +S +++  GS Q   S   C  CT+CG  GHT+D+CY++HG P G++SK  +    
Sbjct: 225 ----RSSSASNSGSRQRNSS---CPYCTNCGIRGHTVDKCYRLHGFPSGYRSKGNQ---- 284

Query: 121 TWHSSAAPSNVALATTPS 139
             HSS      ++++T S
Sbjct: 285 --HSSTPSMTSSVSSTTS 289

BLAST of Sed0012365 vs. NCBI nr
Match: XP_030949946.1 (uncharacterized protein LOC115973845 [Quercus lobata])

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-18
Identity = 54/114 (47.37%), Postives = 72/114 (63.16%), Query Frame = 0

Query: 1   MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQT 60
           M FL+GLND+F   R+Q+LLMDP+ S+SK ++LI+QEE Q +            + V++ 
Sbjct: 106 MKFLMGLNDSFSQVRTQVLLMDPIPSLSKVYSLIIQEETQRTASNASVVKVDSTVLVAKL 165

Query: 61  SNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRCYKIHGCPPGFKSKN 115
           SN   S NS+  G         D  VCTHCG +GHT+D+CYK+HG PPGFK KN
Sbjct: 166 SNDHHSTNSSGKGK--------DRLVCTHCGKIGHTVDKCYKLHGFPPGFKFKN 211

BLAST of Sed0012365 vs. NCBI nr
Match: XP_034677823.1 (uncharacterized protein LOC117908333 [Vitis riparia])

HSP 1 Score: 100.9 bits (250), Expect = 9.1e-18
Identity = 53/118 (44.92%), Postives = 74/118 (62.71%), Query Frame = 0

Query: 1   MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSM-----PLLPTPPSSLML 60
           M FL+GLN++F   R+QILLM+P   ++K F+L+VQEE Q S+     P    P SS   
Sbjct: 189 MQFLLGLNESFAQIRAQILLMEPAPPLNKVFSLVVQEERQRSLTTSNSPTFTAPVSSRFQ 248

Query: 61  SVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRCYKIHGCPPGFKSK 114
           + S+ S+            S ++RSR D  +CTHC  +GHT+DRCYKIHG PPGF+++
Sbjct: 249 AASRASS-----------PSNASRSRKDRPLCTHCNILGHTVDRCYKIHGYPPGFRNR 295

BLAST of Sed0012365 vs. NCBI nr
Match: XP_042976284.1 (uncharacterized protein LOC122307457 [Carya illinoinensis])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-17
Identity = 59/131 (45.04%), Postives = 82/131 (62.60%), Query Frame = 0

Query: 1   MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQT 60
           M FL+GL+D+F S RSQILL+DP  S++K  +L++QEE Q  + L  + P SL    + T
Sbjct: 192 MQFLMGLSDSFNSIRSQILLIDPFPSMNKVISLVLQEEKQREITLETSVP-SLESVAALT 251

Query: 61  SNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRCYKIHGCPPGFKSKNARDVTS 120
           +  MK        +S+ T  R D  VC+HCG+ GHT ++CYKIHG PPGFKSK   + ++
Sbjct: 252 AKPMK----IGTNASKQTNFRKDKPVCSHCGYTGHTSEKCYKIHGFPPGFKSKRGNNASA 311

Query: 121 -TWHSSAAPSN 131
              +SS   SN
Sbjct: 312 YQSYSSMGKSN 317

BLAST of Sed0012365 vs. NCBI nr
Match: XP_030970454.1 (uncharacterized protein LOC115990812 [Quercus lobata])

HSP 1 Score: 99.8 bits (247), Expect = 2.0e-17
Identity = 54/128 (42.19%), Postives = 74/128 (57.81%), Query Frame = 0

Query: 1   MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQT 60
           M F +G ND+F   R+Q LLMDP+ S+SK ++L++QE+ Q S+P          +  ++T
Sbjct: 106 MKFFMGFNDSFSQVRTQDLLMDPIPSLSKVYSLLIQEDIQRSVPNASIAKVDSTVLAAKT 165

Query: 61  SNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRCYKIHGCPPGFKSKNARDVTS 120
           SN     + T + S+ S     D  VCTHCG  GHT+D+CYK+HG PPGFK KN   V  
Sbjct: 166 SN---DNHGTNLASTSSGGKGKDRPVCTHCGKTGHTVDKCYKLHGFPPGFKFKNKPSVAH 225

Query: 121 TWHSSAAP 129
              S   P
Sbjct: 226 QVSSEFLP 230

BLAST of Sed0012365 vs. ExPASy TrEMBL
Match: A0A6J1DLQ9 (uncharacterized protein LOC111022117 OS=Momordica charantia OX=3673 GN=LOC111022117 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.9e-19
Identity = 59/138 (42.75%), Postives = 87/138 (63.04%), Query Frame = 0

Query: 1   MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQT 60
           M FL+GLN++F   R+QILLMDP  S+ KAF+LI QEE Q  +PL  TP  ++ L+V+Q+
Sbjct: 165 MKFLMGLNESFAHIRAQILLMDPPPSIGKAFSLISQEEQQRVIPLFSTPSPAVGLAVNQS 224

Query: 61  SNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRCYKIHGCPPGFKSKNARDVTS 120
               +S +++  GS Q   S   C  CT+CG  GHT+D+CY++HG P G++SK  +    
Sbjct: 225 ----RSSSASNSGSRQRNSS---CPYCTNCGIRGHTVDKCYRLHGFPSGYRSKGNQ---- 284

Query: 121 TWHSSAAPSNVALATTPS 139
             HSS      ++++T S
Sbjct: 285 --HSSTPSMTSSVSSTTS 289

BLAST of Sed0012365 vs. ExPASy TrEMBL
Match: A0A2N9EYN0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7591 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-18
Identity = 61/136 (44.85%), Postives = 84/136 (61.76%), Query Frame = 0

Query: 1   MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQT 60
           M FL+GLN++F   R QILLMDPM  ++K F+LI QEE Q S+  L    SS    V  T
Sbjct: 168 MQFLMGLNESFAPVRGQILLMDPMPPINKVFSLIRQEERQRSIGSLNASLSSPF--VEST 227

Query: 61  SNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRCYKIHGCPPGFKSK------N 120
           +   KS+ + TVGS Q  + + +   CTHCG +GHTID+CYK+HG PPG+K++      N
Sbjct: 228 ALLCKSEGTKTVGSKQLFQKK-ERPQCTHCGLLGHTIDKCYKLHGFPPGYKTRGKTPAAN 287

Query: 121 ARDVTSTWHSSAAPSN 131
              +TS   ++ A +N
Sbjct: 288 QTSLTSFGQTAGAVTN 300

BLAST of Sed0012365 vs. ExPASy TrEMBL
Match: A0A2N9IWI8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57619 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 9.8e-18
Identity = 60/136 (44.12%), Postives = 83/136 (61.03%), Query Frame = 0

Query: 1    MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSMPLLPTPPSSLMLSVSQT 60
            M FL+GLN++F   R QILLMDPM  ++K F+LI QEE Q S+  L    SS    V  T
Sbjct: 1578 MQFLMGLNESFAPVRGQILLMDPMPPINKVFSLIRQEERQRSIGSLNASLSSPF--VEST 1637

Query: 61   SNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRCYKIHGCPPGFKSK------N 120
            +   KS+ + TVGS Q  + + +   CTHCG +GHTID+CYK+HG PP +K++      N
Sbjct: 1638 ALLCKSEGTKTVGSRQHFQKK-ERPQCTHCGLLGHTIDKCYKLHGFPPSYKTRGKTPAAN 1697

Query: 121  ARDVTSTWHSSAAPSN 131
               +TS   ++ A +N
Sbjct: 1698 QTSLTSFGQTAGAVTN 1710

BLAST of Sed0012365 vs. ExPASy TrEMBL
Match: A0A438I180 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2558 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = 0

Query: 1   MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSM-----PLLPTPPSSLML 60
           M FL+GLN++F   R+QILLM+P   ++K F+L+VQEE Q S+     P    P SS   
Sbjct: 30  MQFLLGLNESFAPIRAQILLMEPTPPLNKVFSLVVQEERQRSLTTSNSPAFTAPVSSRFQ 89

Query: 61  SVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRCYKIHGCPPGFKSK 114
           + S+ S+            + ++RSR D  +CTHC  +GHT+DRCYKIHG PPGF+++
Sbjct: 90  AASRASS-----------PTNASRSRKDRPLCTHCNILGHTVDRCYKIHGYPPGFRNR 136

BLAST of Sed0012365 vs. ExPASy TrEMBL
Match: A0A438BW82 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3455 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 52/118 (44.07%), Postives = 74/118 (62.71%), Query Frame = 0

Query: 1   MSFLIGLNDTFGSARSQILLMDPMRSVSKAFTLIVQEEHQHSM-----PLLPTPPSSLML 60
           M FL+GLN++F   R+QILLM+P   ++K F+L+VQEE Q S+     P    P SS   
Sbjct: 159 MQFLLGLNESFAPIRAQILLMEPTPPLNKVFSLVVQEEQQRSLTTSNSPAFTAPVSSRFQ 218

Query: 61  SVSQTSNSMKSQNSTTVGSSQSTRSRIDCSVCTHCGFVGHTIDRCYKIHGCPPGFKSK 114
           + S+ S+            + ++RSR D  +CTHC  +GHT+DRCYKIHG PPGF+++
Sbjct: 219 AASRASS-----------PTNASRSRKDRPLCTHCNILGHTVDRCYKIHGYPPGFRNR 265

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154973.11.8e-1842.75uncharacterized protein LOC111022117 [Momordica charantia][more]
XP_030949946.11.8e-1847.37uncharacterized protein LOC115973845 [Quercus lobata][more]
XP_034677823.19.1e-1844.92uncharacterized protein LOC117908333 [Vitis riparia][more]
XP_042976284.11.2e-1745.04uncharacterized protein LOC122307457 [Carya illinoinensis][more]
XP_030970454.12.0e-1742.19uncharacterized protein LOC115990812 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DLQ98.9e-1942.75uncharacterized protein LOC111022117 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A2N9EYN02.0e-1844.85Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS7591 PE=4 SV=1[more]
A0A2N9IWI89.8e-1844.12Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57619 PE=4 SV=1[more]
A0A438I1801.3e-1744.07Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976... [more]
A0A438BW821.3e-1744.07Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34222FAMILY NOT NAMEDcoord: 1..123
NoneNo IPR availablePANTHERPTHR34222:SF6OS02G0671800 PROTEINcoord: 1..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0012365.1Sed0012365.1mRNA