Sed0012289 (gene) Chayote v1

Overview


Name	Sed0012289
Type	gene
Organism	Sechium edule (Chayote v1)
Description	EF-hand domain-containing protein
Location	LG02: 51292681 .. 51296288 (-)
RNA-Seq Expression	Sed0012289
Synteny	Sed0012289

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCGTATGAGACAAAACCAAGCAAATGTATAACATAACTTGCATTCAAGGAAAGCTGAGGTCCCTTTATTCCAAACTGGAAAAGGAAATGTGTGTATGAATTTGATCACTTTTTCTTTTACAAAACCCTCCAGAAATGGCAGATTTCGTTATCGTTGCTGCTACGCCGGAAATCTCAACCTTCCTCTGCCGGAGAACGGATTTCAACCGCTGTCGGCGGCTGTTTTGCGAGGCCTGCGATCTCAAATCGCCGTCGGTGCCGTTTAAGCATGGGACAAACCTTGGGGAGATTCTTAGGTAAACTGACCCTATCGCAAACTTCGTTTTCAGCTTTCTGTTTGAATCCGTCCATAAATTAATGTAGAAATCGAGAATTCCTAGTCTTATTCGTGAAATTTCATTCATCAACGTTCAGTTCTGTGTCGTTTACTGATACTTCCGTAGACTTAATCGTTGAACTTATCGGTTTTGATTCTTATGTTGTCTGTTTGATGTGCTAAATTAGATAATGTTCGCTATTTCTGTCGATTTGATACTGTGTCTGATTGTAATTGAGGGAAGTAGACAGGATTTTTTATAAGATTAGTGTTACGGACAACAAACATTCACATTGATATGATATTGTCGAGGTTTGAGGATTTCGTTGTCCCGACAAGTGCTATCAGAGGATGTTTTTTCTGTTTCGATTTGATTTTTTAATTTTTTTTTTTCAGTTTTCTATTTGAATCCATCGATAAATTGATCTACATAGGAGTTCATAGCGATTTCTTCTTTAAAAGAGATCGATCTTATGAGTGAAATTTGATTAACTTTCGATTCTTCATCGTTAATTGGTATTGTCGTGGACTTAATCGATGAACTTATAGGTTTTGATTCTTACGTTGTTTGTTTGGTGTGCTAAATTAGCTAATGTTGGCTGTTCTGTGGATTTGATACTGTCTGCTTGTAATTGAGGGAGATAAACAGGATTTTTGATACGATTAGTAGTGGAAGTATGAGTAATTGGTACACTTTTGATGTTATTTTTCTTGCAATTGCAGGAAAAGAATGGAGGGATGAGCGATTGAAGAAGATATCAGACAGGATATTTAATAAGATTATAAAACAATCGGAAAAAGAGAGGCTGTCATTTGAAGATTTGTATATCGCTACGTTACTTGTGTACAAGTAAGAAGCTTTATTATTATTATTTTTGGGTAACTTATTCGTTTGTTTATTCTGTTTATAATGTTTCATTCTTAATATTATAATGCAAAACCCATGGCTAACTGATAGTAAGAATTGTAAGTTTGTTTGGTAAAGTTCCATTTGCTGTTTCTTGTTCTCCTTTTCAACTAAAAGAATACAAGTGCTTTTGGTGATGGTTTCTTAATTGTTATTGTAACCATCTCTTAGTTCTCCCAAAATTTATGGTAACAGGAATGGGCTTTAAATAAAAAGAAAGAACAATAACTATGTCTTCTTTGATAACCAAGTCAAGTTTTGAAGGTTTGAGAAAAGTAGTTTTTGCTTTTAGAAGTTGGCTAAAAATCCAAATATTTCCTTAGGAAAGATAAAACTCATTGTATAGAAATTGAAAGAAAGCAAGCTGATTTTCAAAATCTAAAAGTCGAAAACTAAATAGTTATCGAACTTCTAAAGTAATGTCATTAAACAAGTCCTAGATTTTCAAATTGGACTCGAACTTTGACCCGTCTGGATATCTCTTTAACATCTCAAACTCTTGGTGATATCGATAAGGCATCTTGTCGGCTTTGTTTAATCCCAATCTAAAATTGCGTGTGATGCAGTGAGATTAATAAGCTGTTGCCCGGCCCACATCTTGATCCGCCCTCGAAGGAACATATCAGAGAACTTATCCAGGTACGCTGATGATACAATAAATTAAAAATTACAAAGGTTTTGTAGTGCTAGAAAGTGGTACCTATTGTTCATTGGGAAATCTAAACTCAGCTGGATGTTAATCCCTTTCTTAAGTTCTAAATGCTCAGCAGTTATTGTTCTTCACTTGGTGCTAATGAATTTGGCTGACGTGTGGTTATCAACTTGCTTTTTCTGCTTGTTTGGTTTTCCAGTTCCTAATTTATCGTGTTCGTCAAGAGGAATTGTGGCCTTATTTAACTGCTACTTCCATGCTCTTCCTGTTGCCATGTCACATGTCTTTCAAACAAAATTAAGCATTGGATAAAAAATTCGTTTATTTTTTTTTTATTTTTTATACTTTTTTGTTTTTTAAATTCATGCTAGGTCTAACTTTACTTTTTTACCATGATTTTTATTGTCTATAGATAAATGATTCAAATTTTAAAAACAAAAAAAATAGGTTTTTAAAACTACTGTTTTAGGTATTTGGCAATCATTTCATTTCTTATTTTAGTTTTTGAAAATTAAATTTATAAATATTACTTTTGTCTACTAGTCCCCAAAGAGGTGGGTCGAAGGCTTAGACAGACTTCGAAGGTGTGCTCCTCTCAAAGTCTCAAGTTCGAGACTCCTGTGACATTAATTTGTAGACACCTCCCGTATCTCTATTTTTTTGATGTCTCCGGTACCTAGCCTATGGACGAACATGGTTACCCTGGGTATACAATTTCCCGGTATAAAAAAAAACACTACTTTTGTCTACTAATATGTTTATTTTGTTACCTATTTATAAAAAAATGCTTTTAAAATCCAACCCAAGCTTTGATTTTTTATATGTTTTTTAAGAGCTTGTCTTTGTTTTTAGAATTAGACTAGAAATTCAAATGTTTCTTCAAGAACCATAGTAAAAAAATGGTAAGCAAAATACATCAATTTCATAGAAACTCAAAAGGTTATCATCTGGAATCATATGGGACCTTACTTTTCAGAACTTGGCTTAAATTCTAATAAACTTTTTTGAAAAGTAGATAACAAAATTATAATATTCATAGGTGGAAATAGTTTTTATAGGCTTGGTTTCTCTAGTTATATATCAAATAGTTTCGCCCCTCTCTAGTTATATACTTGCGAACAACTACTTTATACAAACACATGTAAAACTTCTGCGCTGGTATATCTGCTGCTGACCACATATATGTTGACGGCTCGTTGTATCATCAGGAAAGCGATACGGACAGCGACCTAGAAATTGATCGCGAAGAATTTTTTAGTTTTATACTGAGCTTGACATCGGACACGTTCATATTGGTGAGCCAGACGTTGGTTCTCACTTTGGTGGTTGCACCGACGGTGGCAGTGGCGACAAAGACGAGCACAGAAGGCATTCCGGTCATTGGAAAATTGGTGCAGACACTGCCTGATTCAGTTTATGCTTTCCTAGTCACTGTTGCTGCTGTGATGTTCCAAAACTCTCAGCAGGGGCTTCTTAATTGATGAGTTCGTCATCTGTTTCATTTCTTTGTTGTTTCCATGCAATGTGATTCTGGACATATTAACACTTGAAACTTTGAATCTACTATTTGTGAAGCCTTGTTTGTTGAACTTTGTTTCTGTGGCTGTTTATCTTTTTCTTTCCTTTCATGGAGGCCCTCTCTTTCAAACTGATAGGACCAGGGTTGATAGATTTCAACTTCAGAACAAATCTGAACTGATGGTAGTTTTTTTTTTAGATTACAATAATTGGG

mRNA sequence

GTCCGTATGAGACAAAACCAAGCAAATGTATAACATAACTTGCATTCAAGGAAAGCTGAGGTCCCTTTATTCCAAACTGGAAAAGGAAATGTGTGTATGAATTTGATCACTTTTTCTTTTACAAAACCCTCCAGAAATGGCAGATTTCGTTATCGTTGCTGCTACGCCGGAAATCTCAACCTTCCTCTGCCGGAGAACGGATTTCAACCGCTGTCGGCGGCTGTTTTGCGAGGCCTGCGATCTCAAATCGCCGTCGGTGCCGTTTAAGCATGGGACAAACCTTGGGGAGATTCTTAGGAAAAGAATGGAGGGATGAGCGATTGAAGAAGATATCAGACAGGATATTTAATAAGATTATAAAACAATCGGAAAAAGAGAGGCTGTCATTTGAAGATTTGTATATCGCTACGTTACTTGTGTACAATGAGATTAATAAGCTGTTGCCCGGCCCACATCTTGATCCGCCCTCGAAGGAACATATCAGAGAACTTATCCAGGAAAGCGATACGGACAGCGACCTAGAAATTGATCGCGAAGAATTTTTTAGTTTTATACTGAGCTTGACATCGGACACGTTCATATTGGTGAGCCAGACGTTGGTTCTCACTTTGGTGGTTGCACCGACGGTGGCAGTGGCGACAAAGACGAGCACAGAAGGCATTCCGGTCATTGGAAAATTGGTGCAGACACTGCCTGATTCAGTTTATGCTTTCCTAGTCACTGTTGCTGCTGTGATGTTCCAAAACTCTCAGCAGGGGCTTCTTAATTGATGAGTTCGTCATCTGTTTCATTTCTTTGTTGTTTCCATGCAATGTGATTCTGGACATATTAACACTTGAAACTTTGAATCTACTATTTGTGAAGCCTTGTTTGTTGAACTTTGTTTCTGTGGCTGTTTATCTTTTTCTTTCCTTTCATGGAGGCCCTCTCTTTCAAACTGATAGGACCAGGGTTGATAGATTTCAACTTCAGAACAAATCTGAACTGATGGTAGTTTTTTTTTTAGATTACAATAATTGGG

Coding sequence (CDS)

ATGGGACAAACCTTGGGGAGATTCTTAGGAAAAGAATGGAGGGATGAGCGATTGAAGAAGATATCAGACAGGATATTTAATAAGATTATAAAACAATCGGAAAAAGAGAGGCTGTCATTTGAAGATTTGTATATCGCTACGTTACTTGTGTACAATGAGATTAATAAGCTGTTGCCCGGCCCACATCTTGATCCGCCCTCGAAGGAACATATCAGAGAACTTATCCAGGAAAGCGATACGGACAGCGACCTAGAAATTGATCGCGAAGAATTTTTTAGTTTTATACTGAGCTTGACATCGGACACGTTCATATTGGTGAGCCAGACGTTGGTTCTCACTTTGGTGGTTGCACCGACGGTGGCAGTGGCGACAAAGACGAGCACAGAAGGCATTCCGGTCATTGGAAAATTGGTGCAGACACTGCCTGATTCAGTTTATGCTTTCCTAGTCACTGTTGCTGCTGTGATGTTCCAAAACTCTCAGCAGGGGCTTCTTAATTGA

Protein sequence

MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQSEKERLSFEDLYIATLLVYNEINKLLPGPHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPTVAVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVMFQNSQQGLLN

Homology

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BLAST of Sed0012289 vs. NCBI nr
Match: XP_038876686.1 (uncharacterized protein LOC120069050 [Benincasa hispida])

HSP 1 Score: 235.7 bits (600), Expect = 2.8e-58
Identity = 122/165 (73.94%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQSEKERLSFEDLYIATLLVYNEINKLLPG 60
           MGQ+LGRF GKEWRDE+L+KIS++IF+K   QS +++LSFEDLYIATLLVYN+INK +PG
Sbjct: 1   MGQSLGRFGGKEWRDEQLRKISNKIFDKFKNQSHRDKLSFEDLYIATLLVYNDINKYMPG 60

Query: 61  PHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPTV 120
           PHLDPP+KE ++ELIQ+SD D D EIDREEF  FILSLTSDTF+ VSQ L+LTLVVAPTV
Sbjct: 61  PHLDPPTKERVKELIQDSDRDEDREIDREEFLDFILSLTSDTFVSVSQRLILTLVVAPTV 120

Query: 121 AVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVMFQNSQQGLL 166
           AV TK STEG+P +GK VQ LP S YAFLVT+AA+MFQNSQQ LL
Sbjct: 121 AVVTKKSTEGVPGLGKFVQKLPASAYAFLVTLAALMFQNSQQQLL 165

[Close]

BLAST of Sed0012289 vs. NCBI nr
Match: XP_022146952.1 (uncharacterized protein LOC111016024 [Momordica charantia])

HSP 1 Score: 216.9 bits (551), Expect = 1.4e-52
Identity = 117/163 (71.78%), Postives = 133/163 (81.60%), Query Frame = 0


Query: 1   MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQSEKERLSFEDLYIATLLVYNEINKLLPG 60
           MGQ L +  GK+WRD +++KISD+IFNKI   S+K  LSFEDLYIATLLVYNEINK LPG
Sbjct: 54  MGQILDKIGGKQWRDAQMRKISDKIFNKIKNHSDKVNLSFEDLYIATLLVYNEINKRLPG 113

Query: 61  PHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPTV 120
           PH DPPSKE +RELI+ESD + D EIDREEF  FIL LTSDT I VSQ LVLTLVVAPTV
Sbjct: 114 PHHDPPSKERVRELIKESDLNMDQEIDREEFMKFILLLTSDTVITVSQGLVLTLVVAPTV 173

Query: 121 AVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVMFQNSQQG 164
           AV TK STEG+P +GKLVQ LP SVYA L+T+AA+ FQN+ QG
Sbjct: 174 AVVTKKSTEGVPGVGKLVQKLPASVYASLITLAALSFQNAHQG 216

[Close]

BLAST of Sed0012289 vs. NCBI nr
Match: XP_023540969.1 (uncharacterized protein LOC111801195 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.0 bits (528), Expect = 6.3e-50
Identity = 110/165 (66.67%), Postives = 136/165 (82.42%), Query Frame = 0


Query: 1   MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQSEKERLSFEDLYIATLLVYNEINKLLPG 60
           MGQ LGRF GKEWR ++LK ISDRIF+KI KQS+KE LSFE+LYIATLLV+N+INKLL G
Sbjct: 1   MGQILGRFGGKEWRIKKLKTISDRIFDKIKKQSDKEELSFEELYIATLLVFNDINKLLSG 60

Query: 61  PHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPTV 120
            H DPPS+EH ++LI+E D + + +ID EEFF F++ LTS+TF  VSQ LVLTLV+APT+
Sbjct: 61  SHHDPPSREHFKQLIKEHDRNKNEKIDNEEFFGFMMELTSETFQSVSQKLVLTLVIAPTI 120

Query: 121 AVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVMFQNSQQGLL 166
           AV TK  TEG+P +GKLVQ LP S YA ++T+AAV+FQ+SQQ LL
Sbjct: 121 AVFTKKRTEGVPGVGKLVQKLPSSAYASIITLAAVLFQSSQQPLL 165

[Close]

BLAST of Sed0012289 vs. NCBI nr
Match: XP_022924303.1 (uncharacterized protein LOC111431834 [Cucurbita moschata])

HSP 1 Score: 201.8 bits (512), Expect = 4.5e-48
Identity = 111/165 (67.27%), Postives = 133/165 (80.61%), Query Frame = 0


Query: 1   MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQSEKERLSFEDLYIATLLVYNEINKLLPG 60
           M + LGRF GKEWRDE+L+ ISDRIF+ I    +K++LSFEDLYIATLLVYN+INK LP 
Sbjct: 1   MRKALGRFGGKEWRDEQLRNISDRIFDMI--GDKKDKLSFEDLYIATLLVYNDINKRLPI 60

Query: 61  PHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPTV 120
            HLDPP++E  RELI+E+D + D +I R+EF  FILSLTSD FI +S  L+LTLV+APTV
Sbjct: 61  SHLDPPTEERFRELIKENDWNQDKKIGRDEFLGFILSLTSDAFISLSHRLILTLVIAPTV 120

Query: 121 AVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVMFQNSQQGLL 166
           AV TK STEGIPVIG LVQ LP S YAFLVT+AA +FQNSQ+ +L
Sbjct: 121 AVVTKRSTEGIPVIGSLVQKLPSSAYAFLVTLAAFVFQNSQKPML 163

[Close]

BLAST of Sed0012289 vs. NCBI nr
Match: XP_023528258.1 (uncharacterized protein LOC111791228 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 5.9e-48
Identity = 110/165 (66.67%), Postives = 133/165 (80.61%), Query Frame = 0


Query: 1   MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQSEKERLSFEDLYIATLLVYNEINKLLPG 60
           M + LGRF GKEWRDE+L+ ISDRIF+ I    +K++LSFEDLYIATLLVYN+INK LP 
Sbjct: 1   MRKALGRFGGKEWRDEQLRNISDRIFDMI--GDKKDKLSFEDLYIATLLVYNDINKRLPI 60

Query: 61  PHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPTV 120
            HLDPP++E  RELI+E+D + D +I R+EF  FILSLTSD FI +S  L+LTLV+APTV
Sbjct: 61  SHLDPPTEERFRELIKENDWNQDKKIGRDEFLGFILSLTSDAFISLSHRLILTLVIAPTV 120

Query: 121 AVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVMFQNSQQGLL 166
           AV TK STEGIPV+G LVQ LP S YAFLVT+AA +FQNSQ+ +L
Sbjct: 121 AVVTKRSTEGIPVVGSLVQKLPSSAYAFLVTLAAFVFQNSQKPML 163

[Close]

BLAST of Sed0012289 vs. ExPASy TrEMBL
Match: A0A6J1D109 (uncharacterized protein LOC111016024 OS=Momordica charantia OX=3673 GN=LOC111016024 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 6.6e-53
Identity = 117/163 (71.78%), Postives = 133/163 (81.60%), Query Frame = 0


Query: 1   MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQSEKERLSFEDLYIATLLVYNEINKLLPG 60
           MGQ L +  GK+WRD +++KISD+IFNKI   S+K  LSFEDLYIATLLVYNEINK LPG
Sbjct: 54  MGQILDKIGGKQWRDAQMRKISDKIFNKIKNHSDKVNLSFEDLYIATLLVYNEINKRLPG 113

Query: 61  PHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPTV 120
           PH DPPSKE +RELI+ESD + D EIDREEF  FIL LTSDT I VSQ LVLTLVVAPTV
Sbjct: 114 PHHDPPSKERVRELIKESDLNMDQEIDREEFMKFILLLTSDTVITVSQGLVLTLVVAPTV 173

Query: 121 AVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVMFQNSQQG 164
           AV TK STEG+P +GKLVQ LP SVYA L+T+AA+ FQN+ QG
Sbjct: 174 AVVTKKSTEGVPGVGKLVQKLPASVYASLITLAALSFQNAHQG 216

[Close]

BLAST of Sed0012289 vs. ExPASy TrEMBL
Match: A0A6J1EC16 (uncharacterized protein LOC111431834 OS=Cucurbita moschata OX=3662 GN=LOC111431834 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.2e-48
Identity = 111/165 (67.27%), Postives = 133/165 (80.61%), Query Frame = 0


Query: 1   MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQSEKERLSFEDLYIATLLVYNEINKLLPG 60
           M + LGRF GKEWRDE+L+ ISDRIF+ I    +K++LSFEDLYIATLLVYN+INK LP 
Sbjct: 1   MRKALGRFGGKEWRDEQLRNISDRIFDMI--GDKKDKLSFEDLYIATLLVYNDINKRLPI 60

Query: 61  PHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPTV 120
            HLDPP++E  RELI+E+D + D +I R+EF  FILSLTSD FI +S  L+LTLV+APTV
Sbjct: 61  SHLDPPTEERFRELIKENDWNQDKKIGRDEFLGFILSLTSDAFISLSHRLILTLVIAPTV 120

Query: 121 AVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVMFQNSQQGLL 166
           AV TK STEGIPVIG LVQ LP S YAFLVT+AA +FQNSQ+ +L
Sbjct: 121 AVVTKRSTEGIPVIGSLVQKLPSSAYAFLVTLAAFVFQNSQKPML 163

[Close]

BLAST of Sed0012289 vs. ExPASy TrEMBL
Match: A0A6J1IGT6 (uncharacterized protein LOC111472754 OS=Cucurbita maxima OX=3661 GN=LOC111472754 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 8.3e-48
Identity = 106/165 (64.24%), Postives = 133/165 (80.61%), Query Frame = 0


Query: 1   MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQSEKERLSFEDLYIATLLVYNEINKLLPG 60
           MGQ LGRF GK+WR ++LK IS+RIF+KI KQS+KE LSFE+LYIATLLV+N+INKLL G
Sbjct: 1   MGQVLGRFGGKDWRIKKLKMISNRIFDKIKKQSDKEELSFEELYIATLLVFNDINKLLSG 60

Query: 61  PHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPTV 120
            H DPPS+EH ++LI   D++ + +ID EEFF F++ LTS+TF  VSQ LVLTLV+APT+
Sbjct: 61  SHHDPPSREHFKQLITAHDSNKNEKIDNEEFFGFMMELTSETFKSVSQKLVLTLVIAPTI 120

Query: 121 AVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVMFQNSQQGLL 166
           AV TK  TEG P +GKLVQ LP S YA ++T+AAV+FQ+S Q LL
Sbjct: 121 AVFTKKRTEGFPGVGKLVQKLPSSAYASIITLAAVLFQSSHQPLL 165

[Close]

BLAST of Sed0012289 vs. ExPASy TrEMBL
Match: A0A6J1A5X4 (uncharacterized protein LOC110415261 OS=Herrania umbratica OX=108875 GN=LOC110415261 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.1e-47
Identity = 102/164 (62.20%), Postives = 133/164 (81.10%), Query Frame = 0


Query: 1   MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQSEKERLSFEDLYIATLLVYNEINKLLPG 60
           MGQ L +F GKEWR ++++KISD++F +I  QS +  L+FEDLYI+ LLVYN+INK LPG
Sbjct: 1   MGQVLDKFHGKEWRKKQIRKISDKVFERIQNQSGRATLTFEDLYISILLVYNDINKRLPG 60

Query: 61  PHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPTV 120
           PH DPPSKE +R ++QE D + D EIDREEF  FI  LT+DTFI+VSQ L++TLVVAPTV
Sbjct: 61  PHFDPPSKEQVRSMMQEYDFNLDGEIDREEFVKFIQRLTTDTFIVVSQGLIVTLVVAPTV 120

Query: 121 AVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVMFQNSQQGL 165
           A+ATK +TEG+P +GK+VQ LP+S+YA LVT+A V FQ S++G+
Sbjct: 121 AMATKKATEGVPGVGKVVQKLPNSIYASLVTLAIVWFQTSREGI 164

[Close]

BLAST of Sed0012289 vs. ExPASy TrEMBL
Match: A0A6J1ITL1 (uncharacterized protein LOC111479803 OS=Cucurbita maxima OX=3661 GN=LOC111479803 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 108/165 (65.45%), Postives = 133/165 (80.61%), Query Frame = 0


Query: 1   MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQSEKERLSFEDLYIATLLVYNEINKLLPG 60
           M + LGRF GKEWRDE+L+ ISDRIF+ I    +K++LSFEDLYIATLLVYN+INK LP 
Sbjct: 1   MRKALGRFGGKEWRDEQLRNISDRIFDMI--GDKKDKLSFEDLYIATLLVYNDINKRLPI 60

Query: 61  PHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPTV 120
            HLDPP++E  R+L++E+D + D +I R+EF  FILSLTSD FI +S  L+LTLV+APTV
Sbjct: 61  SHLDPPTEERFRQLMKENDWNEDKKIGRDEFLGFILSLTSDAFISLSHRLILTLVIAPTV 120

Query: 121 AVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVMFQNSQQGLL 166
           AV TK STEGIPV+G LVQ LP S YAFLVT+AA +FQNSQ+ +L
Sbjct: 121 AVVTKRSTEGIPVVGSLVQKLPSSAYAFLVTLAAFVFQNSQKPML 163

[Close]

BLAST of Sed0012289 vs. TAIR 10
Match: AT1G64850.1 (Calcium-binding EF hand family protein )

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-41
Identity = 86/160 (53.75%), Postives = 121/160 (75.62%), Query Frame = 0


Query: 1   MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQSEKERLSFEDLYIATLLVYNEINKLLPG 60
           MGQ   +  GKEWR ++++ I DR+F++   Q+ +  L+FE+LYIA LLVYN+INK LPG
Sbjct: 1   MGQVFNKLRGKEWRHKQVQAICDRVFDRFKMQTGRANLTFEELYIAVLLVYNDINKRLPG 60

Query: 61  PHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPTV 120
           PH DPPSK+ +  ++ + D + D E+DREEF  FI  +T++TF +VSQ L++ L+VAPTV
Sbjct: 61  PHFDPPSKDLVNSIMTDCDINLDGELDREEFVKFIEQITAETFNVVSQGLIIALIVAPTV 120

Query: 121 AVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVMFQNS 161
           A+ATK +TEG+P +GK+VQ LP S+YA LVT+ AVM+ NS
Sbjct: 121 AIATKKATEGVPGVGKVVQKLPTSIYASLVTL-AVMWVNS 159

[Close]

BLAST of Sed0012289 vs. TAIR 10
Match: AT4G37445.1 (BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-07
Identity = 42/157 (26.75%), Postives = 81/157 (51.59%), Query Frame = 0


Query: 1   MGQTLGRFLGKEWRDERLKKISDRIFNKIIKQ-SEKERLSFEDLYIATLLVYNEINKLLP 60
           MG ++G FLGK     ++  +   +   + KQ ++K   +F+D ++A L ++N  N  LP
Sbjct: 1   MGSSMG-FLGKGVPPTQMMNM---VMGSLYKQFTQKAINNFDDFHVAVLDIFNNFNSALP 60

Query: 61  GPHLDPPSKEHIRELIQESDTDSDLEIDREEFFSFILSLTSDTFILVSQTLVLTLVVAPT 120
           G H D P+ + I+          D E  ++ F  F+      +   +    ++T +V+P 
Sbjct: 61  GRHFDFPTPDQIKVCFARWKEAKDEEEKKKLFIEFMSKSVKPS--KLDDVTMITGIVSPP 120

Query: 121 VAVATKTSTEGIPVIGKLVQTLPDSVYAFLVTVAAVM 157
            A+A K + E +P + KL++ +PD ++   VT+ A++
Sbjct: 121 AAMAAKRAGENVPQL-KLIKLIPDVIFVPTVTILAIV 150

The following BLAST results are available for this feature:

BLAST of Sed0012289 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876686.1	2.8e-58	73.94	uncharacterized protein LOC120069050 [Benincasa hispida]	[more]
XP_022146952.1	1.4e-52	71.78	uncharacterized protein LOC111016024 [Momordica charantia]	[more]
XP_023540969.1	6.3e-50	66.67	uncharacterized protein LOC111801195 [Cucurbita pepo subsp. pepo]	[more]
XP_022924303.1	4.5e-48	67.27	uncharacterized protein LOC111431834 [Cucurbita moschata]	[more]
XP_023528258.1	5.9e-48	66.67	uncharacterized protein LOC111791228 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Sed0012289 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0012289 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D109	6.6e-53	71.78	uncharacterized protein LOC111016024 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1EC16	2.2e-48	67.27	uncharacterized protein LOC111431834 OS=Cucurbita moschata OX=3662 GN=LOC1114318...	[more]
A0A6J1IGT6	8.3e-48	64.24	uncharacterized protein LOC111472754 OS=Cucurbita maxima OX=3661 GN=LOC111472754...	[more]
A0A6J1A5X4	1.1e-47	62.20	uncharacterized protein LOC110415261 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A6J1ITL1	1.4e-47	65.45	uncharacterized protein LOC111479803 OS=Cucurbita maxima OX=3661 GN=LOC111479803...	[more]

BLAST of Sed0012289 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64850.1	1.5e-41	53.75	Calcium-binding EF hand family protein	[more]
AT4G37445.1	1.4e-07	26.75	BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family prote...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 12..105 e-value: 1.6E-6 score: 30.1
None	No IPR available	PANTHER	PTHR11639:SF133	CALCIUM-BINDING EF HAND PROTEIN	coord: 5..163
None	No IPR available	PANTHER	PTHR11639	S100 CALCIUM-BINDING PROTEIN	coord: 5..163
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 66..101 score: 11.138062
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 24..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012289.1	Sed0012289.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0048306	calcium-dependent protein binding
molecular_function	GO:0005509	calcium ion binding