Sed0012264 (gene) Chayote v1

Overview


Name	Sed0012264
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ribosomal protein
Location	LG12: 33652998 .. 33656616 (-)
RNA-Seq Expression	Sed0012264
Synteny	Sed0012264

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAAAATGGGGAAAAAAGAAAAATGAAATTGAGGTGTGGTTTTTATATTTGTGTGAAAAGAGAATATATATATATATAGCTCAATTGCTGTGTGGTACTGTATTTTACGTTCACCGCAACTCAGCCGGCCGCCGTCGCTCCCGATTCGAAGGTATTATTATTGCTAACAAAAATCATTCATCTTCTCCGTTTAGATTTGCTTCATCAACAGTAGTTCTTGAACACGATTTTCTGTTTTTCATTGCTGAAATTTGATGTTGCCAGATTTTAGGGTTTTGTATAGATTTCTGTTTCAACATTTTTCAATTTCGGTAACAACAACTTTGCTGGAATGATTAAATTTCTGTTAATCACATCGACTTTTGTATAGTTATTTCATTGGCTTCTCTTTCTAGAAAGAGATGTGTGAGAAAAGGGGCGGCTGTGCAGAGAAATTAGGGTTTTTTGTTTACCTTTTAATAATAAAATAACGCATCTCTTTCTCTGCTGCTCTGTTTTTTGTTTTTGGGACAAAATCTCTGTATACAAAGAACGAATGATTTTTTTTTTTGAATCGTTTCGATATGCATGTGGATCGTTTCTTTTTCACTCTGAAAACTTCTGATTCGGGCTATTTGCGATTCGAAATTACGATGTGAATCGATTTTTAATGAATCGTAACGCACGTTTTTGATAACCTTGATGATATCAATGAAAATTGAGATTTGATTTAAGATTGGTGAATCCTAAAGAAGCACGATCTCGAGGGGATGTTAAGAATCCCACATTGGAAAGAGTGGAGAGCTCGCAACAATATATAAGAGTTATGAGTTAATTCCTTTCCAATTGATTTTGAGGTGGAATCCCATGTTATCTAATAGATTTTAACACATGTCTTTGATAATGGGATAAAAAAAGGGAGGGGTTGCTCATTGATTGATTTTCTGCAAAGATACGTGGTTCGGGTGGTTTTGGGGCTAACCCAAACTTTTTGTGGTTTGTCAATCAACTCGTTTAACCCTATTAGAGCAACGCAACACATGTATTTTTGGGTTGGATTGGATTGAGTCAAGTTATCGAGTTGTATTTCTCTCTTTTTTCCTCCTCTAAATCCCGCCCATAATCCATAATGTAAAAAATGCATGATATTAAAGTTGAATCCAAGATGTATCTCTCACTAGTATGCTCCCTACCCTACTAATATATCTCGTTAGTTAATCTTACACACTTAAACTTATAAAGTTTTATTCATTTTGAATTGGGTTGAATGAGTTAAAAATTGATCAATCCAAGAACCGACCCAATTCAAAGGAAATTATAAAATTTAACTCAATTCAAAGGAAATTATAACCCAACCCAACCCTTATAGTTTGAGTTGTGTCGTTCGAGTTACTTGGGTCGTGGTTCTTTTGTACATTACTTGTGGATCCATGTTTTTTCCATTTTGTACTGTACTATATTTTCAGTGTATCCGTTCACTTTTCATTAATTTCACTGTTGGAACTGGCGGTATTGAGGTATGATTTTAACATTGCATTTAAGTGCCGCTTCTTCATTTCTTAATTATTTTTTGTTTTCCTTCTTCCAGCCATGAAAGTTCGTTCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAAGCGTAAAGGTCGGGTATATGTATTATGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCAACACTTGCAAGTGAAGCTCCTCCTCCTTCCTTGTAAGTACTTCCTTTTCTTTTGATTTGGGGTTTTTCTGTTATTAGTCTTTGAATGCACATTGTATCTATCTAATTAATCTGTTAAGATGGAAAACTTTTAAGAATTATGCCTTTTGCCTCTGAAATGGCTGAACAAGTTAAAGACTGACAATTTATTACCTGGGGGTAGTATATTAATGTAGTTTGAGTTCATCTGTTTTTGTAATAAAAAATGACCGAACTTGTACATGTAGAAATGAAGAATTTTTGTGTCCCCAAGAGGTGATGCAGTGGTTGAGGACTTAGGCTTTGAGGGTATGCTCCTCTCAAGGTCCTAGTTTCGAAACTCACTTATGACATTACTCCTTCGATGTTTCCGGTGCCTGGCCTAGGAACGGGCGTGGTTAACTTATATAAAAAAAAGAAATGAAGAGTTTTTGTGAGTTCTTCAGCATCGCAATGTACATTTCTTTATTGTTTCCGTACAAAGAAGAATTATGTTGAGGTTAGGTTAGGTTCCTGGAAATTGGTGGTTGCTTAAATTTGGCACCGTAAGTCTTCTTCGAGTTTCATGCTCTACGATGAAGCTAGAGATTGATTTTGTATTACTGGAAGTTGTTTTTCATATTCACGAGTTTTATGAATAATCAGAGCAACAATTAGGAAAACACGAGACATATAATACCACGATTTACATGGTTCATTAACATTGTGATAGCTACATTCACGGCCAAAGGAGAGAATTAGTTTATTAATTACACATGCTTGGTCAACATCTCTTTTTTTTTTTGATAGGAAACAATTTCATTAAAATATGAAATTAAGTCATACAGAGTCACCGACAATTACAAATGGCCTCTCAATTATTAAGGAGGGCAGAAAAGTCATAATCAATAAACAAAGAAGATGCTTGGTCAGCATCTCAACAATGAGTAATATGTTCAGTTATCTTCTTGTTCATATATGATATATCTATATATTGTATGATGGTATGCAGAGGTTTATGATAGAATCTGATCTAGAACAAGAACAATTTTAGGAATACAAGATAAGCCAAATTTTGATAGGAACTTGGAACCTCCTTTATTCATGAGAATCTCTCAAGCCCTAGAAGAATAACCAAATATTTGCATACCATATCACTGCCAAACCCCTCCTATTAAGTAATCCTCTCTAAGGCGAATCCTATCCTTTTCTACTTAGGATTAATCACATGGGTTGTGTCGCTAAATGCATTATATTTTCACTTATTTTCAGGTTCTCAAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTTCGCGTATCGGTCTGGCTTCTCTCATCTCCCAAAAGCATCAGCCAACAATGTTGTTTGGTTGGAGAATGGGCCTCGCTTCAATCCTGTCGAGGAAACAAAATTAGCTTAGTAAACAAAAAGTACATCTGAACTCGACAATTATAAATGTCGCAATTTCGAGTGCCTTGGCAGCCCCTGCTACATTGATTTTTACTAGTTGTTTCCTCTTTGACCTTGTTTCATGATACCATATTTTCAAACATGATGCTGTTATGTCTAAATAGAAATAAGCACACTGATGGTCTCTGTTTTTTTTGAGTTGGTCTTGATAATATTAGAATGGGGAAGAGATGGTGTTACATTGGAATCATTTTGTTTTGCTTATTGTTTACTTTATAGACTCCGGTTTAGTTAGGCCGGAGTTGAACCAGCAATAATTTTCAGCTTCTGAAAATTGCCGGCAGAACTGTAAAATCTTCAGACCAGAGACAGCGACAGTAATCAGCTATCCAACCATTATGTTGGAGATTAGAAGTCAATTTTTCGTTCCTTAATTTCTTCTAAAGAATCCTCTTATCTTTTTTAATTTTTTTTTGAAACAATATCCTCTTATTTTCCACACTATGCCATGAATGAAGTTG

mRNA sequence

TAAAAAATGGGGAAAAAAGAAAAATGAAATTGAGGTGTGGTTTTTATATTTGTGTGAAAAGAGAATATATATATATATAGCTCAATTGCTGTGTGGTACTGTATTTTACGTTCACCGCAACTCAGCCGGCCGCCGTCGCTCCCGATTCGAAGCCATGAAAGTTCGTTCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAAGCGTAAAGGTCGGGTATATGTATTATGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCAACACTTGCAAGTGAAGCTCCTCCTCCTTCCTTGTTCTCAAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTTCGCGTATCGGTCTGGCTTCTCTCATCTCCCAAAAGCATCAGCCAACAATGTTGTTTGGTTGGAGAATGGGCCTCGCTTCAATCCTGTCGAGGAAACAAAATTAGCTTAGTAAACAAAAAGTACATCTGAACTCGACAATTATAAATGTCGCAATTTCGAGTGCCTTGGCAGCCCCTGCTACATTGATTTTTACTAGTTGTTTCCTCTTTGACCTTGTTTCATGATACCATATTTTCAAACATGATGCTGTTATGTCTAAATAGAAATAAGCACACTGATGGTCTCTGTTTTTTTTGAGTTGGTCTTGATAATATTAGAATGGGGAAGAGATGGTGTTACATTGGAATCATTTTGTTTTGCTTATTGTTTACTTTATAGACTCCGGTTTAGTTAGGCCGGAGTTGAACCAGCAATAATTTTCAGCTTCTGAAAATTGCCGGCAGAACTGTAAAATCTTCAGACCAGAGACAGCGACAGTAATCAGCTATCCAACCATTATGTTGGAGATTAGAAGTCAATTTTTCGTTCCTTAATTTCTTCTAAAGAATCCTCTTATCTTTTTTAATTTTTTTTTGAAACAATATCCTCTTATTTTCCACACTATGCCATGAATGAAGTTG

Coding sequence (CDS)

ATGAAAGTTCGTTCTTCAGTGAAAAAGATGTGCGAGTTTTGTAGGACGGTGAAGCGTAAAGGTCGGGTATATGTATTATGCTCATCCAATCCCAAACACAAGCAACGCCAAGGCCTATCAACACTTGCAAGTGAAGCTCCTCCTCCTTCCTTGTTCTCAAGAAGTGAGGTGAAGCAAGAGATTCTTCCCAGTTCGCGTATCGGTCTGGCTTCTCTCATCTCCCAAAAGCATCAGCCAACAATGTTGTTTGGTTGGAGAATGGGCCTCGCTTCAATCCTGTCGAGGAAACAAAATTAG

Protein sequence

MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQEILPSSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN

Homology

[Close]

BLAST of Sed0012264 vs. NCBI nr
Match: XP_038879717.1 (uncharacterized protein LOC120071478 [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 5.6e-38
Identity = 85/100 (85.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQE 60
           MKVR+SVKKMCEFCRTVKR+GRVYV CSSNPKHKQRQGLST ASE PPPSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPPPSLFSRSEVKQE 60

Query: 61  ILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN 99
           +LP  SSR GLASLI QKH+PTML GWRMGLASIL +K+N
Sbjct: 61  LLPSHSSRTGLASLIPQKHEPTMLLGWRMGLASILLKKRN 100

[Close]

BLAST of Sed0012264 vs. NCBI nr
Match: XP_022933442.1 (uncharacterized protein LOC111440855 [Cucurbita moschata] >XP_023531008.1 uncharacterized protein LOC111793393 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.5 bits (423), Expect = 5.6e-38
Identity = 85/100 (85.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQE 60
           MKVR+SVKKMCEFCRTV+R+GRVY+ CS+NPKHKQRQGLST ASEAP PSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 61  ILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN 99
           ILP  SSR GLASLI QKH+PTMLFGWRMGLASIL +KQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Sed0012264 vs. NCBI nr
Match: XP_022971996.1 (uncharacterized protein LOC111470644 [Cucurbita maxima])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 84/100 (84.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQE 60
           MKVR+SVKKMCEFCRTV+R+GRVY+ CSSNPKHKQRQGLST ASEAP PSLFSRSEVK++
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSSNPKHKQRQGLSTFASEAPSPSLFSRSEVKEK 60

Query: 61  ILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN 99
           ILP  SSR GLASLI QKH+PTMLFGWRMGLASIL +KQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Sed0012264 vs. NCBI nr
Match: KAG7021783.1 (rpmJ [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 84/100 (84.00%), Postives = 91/100 (91.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQE 60
           MKVR+SVKKMCEFCRTV+R+GRVY+ CS+NPKHKQRQGLST ASEAP PSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 61  ILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN 99
           I P  SSR GLASLI QKH+PTMLFGWRMGLASIL +KQN
Sbjct: 61  IFPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Sed0012264 vs. NCBI nr
Match: XP_008443993.2 (PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo] >XP_008443994.2 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo] >XP_008443996.1 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo] >KAA0050174.1 50S ribosomal protein L36 [Cucumis melo var. makuwa] >TYK06427.1 50S ribosomal protein L36 [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 3.1e-36
Identity = 83/100 (83.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQE 60
           MKVRSSVKKMCEFCRTVKRKGRVY+ CSSNPKHKQRQGLST A E P PSLFSR+EVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60

Query: 61  ILPS--SRIGLASLISQKHQPTMLFGWRMGLASILSRKQN 99
           ILPS  SR+GLASLI QK++PTML GWRMGLASIL +K N
Sbjct: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 100

[Close]

BLAST of Sed0012264 vs. ExPASy Swiss-Prot
Match: B3WAJ5 (50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ V+RKGRV ++CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Sed0012264 vs. ExPASy Swiss-Prot
Match: Q035A6 (50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 17002 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-10
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ V+RKGRV ++CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKVVRRKGRVMIICSANPKHKQRQG 38

[Close]

BLAST of Sed0012264 vs. ExPASy Swiss-Prot
Match: A5VLI2 (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ VKR GRV V+CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Sed0012264 vs. ExPASy Swiss-Prot
Match: B2G8V5 (50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) OX=557433 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG 39
          MKVR SVKKMCE C+ VKR GRV V+CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Sed0012264 vs. ExPASy Swiss-Prot
Match: Q03PY0 (50S ribosomal protein L36 OS=Lactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB 947 / NCTC 947) OX=387344 GN=rpmJ PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-10
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG 39
          MKVR SVK MCE C+ +KRKGRV V+CS+NPKHKQRQG
Sbjct: 1  MKVRPSVKPMCEHCKVIKRKGRVMVICSANPKHKQRQG 38

[Close]

BLAST of Sed0012264 vs. ExPASy TrEMBL
Match: A0A6J1EZS5 (Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.7e-38
Identity = 85/100 (85.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQE 60
           MKVR+SVKKMCEFCRTV+R+GRVY+ CS+NPKHKQRQGLST ASEAP PSLFSRSEVKQE
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSANPKHKQRQGLSTFASEAPSPSLFSRSEVKQE 60

Query: 61  ILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN 99
           ILP  SSR GLASLI QKH+PTMLFGWRMGLASIL +KQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Sed0012264 vs. ExPASy TrEMBL
Match: A0A6J1I4R0 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111470644 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.8e-38
Identity = 84/100 (84.00%), Postives = 92/100 (92.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQE 60
           MKVR+SVKKMCEFCRTV+R+GRVY+ CSSNPKHKQRQGLST ASEAP PSLFSRSEVK++
Sbjct: 1   MKVRASVKKMCEFCRTVRRRGRVYIYCSSNPKHKQRQGLSTFASEAPSPSLFSRSEVKEK 60

Query: 61  ILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN 99
           ILP  SSR GLASLI QKH+PTMLFGWRMGLASIL +KQN
Sbjct: 61  ILPSHSSRTGLASLIPQKHEPTMLFGWRMGLASILWKKQN 100

[Close]

BLAST of Sed0012264 vs. ExPASy TrEMBL
Match: A0A1S3B8W2 (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103487446 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 83/100 (83.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQE 60
           MKVRSSVKKMCEFCRTVKRKGRVY+ CSSNPKHKQRQGLST A E P PSLFSR+EVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60

Query: 61  ILPS--SRIGLASLISQKHQPTMLFGWRMGLASILSRKQN 99
           ILPS  SR+GLASLI QK++PTML GWRMGLASIL +K N
Sbjct: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 100

[Close]

BLAST of Sed0012264 vs. ExPASy TrEMBL
Match: A0A5A7U4L3 (Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001300 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 83/100 (83.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQE 60
           MKVRSSVKKMCEFCRTVKRKGRVY+ CSSNPKHKQRQGLST A E P PSLFSR+EVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRKGRVYIYCSSNPKHKQRQGLSTFACEGPSPSLFSRTEVKQE 60

Query: 61  ILPS--SRIGLASLISQKHQPTMLFGWRMGLASILSRKQN 99
           ILPS  SR+GLASLI QK++PTML GWRMGLASIL +K N
Sbjct: 61  ILPSQGSRMGLASLIPQKNEPTMLLGWRMGLASILLKKHN 100

[Close]

BLAST of Sed0012264 vs. ExPASy TrEMBL
Match: A0A6J1CT08 (Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.9e-36
Identity = 83/100 (83.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPSLFSRSEVKQE 60
           MKVRSSVKKMCEFCRTVKR+GRVYV CSSNPKHKQRQGLST ASE P P LFSRSEVKQE
Sbjct: 1   MKVRSSVKKMCEFCRTVKRRGRVYVYCSSNPKHKQRQGLSTFASEGPSPPLFSRSEVKQE 60

Query: 61  ILP--SSRIGLASLISQKHQPTMLFGWRMGLASILSRKQN 99
           ILP  S R GLASLI QKH+PT +FGWRMGLASIL +K N
Sbjct: 61  ILPSYSPRTGLASLIPQKHEPTTMFGWRMGLASILLKKHN 100

[Close]

BLAST of Sed0012264 vs. TAIR 10
Match: AT5G20180.1 (Ribosomal protein L36 )

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-26
Identity = 64/103 (62.14%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPS-LFSRSEVKQ 60
           MKVRSSVKKMCEFC+TVKR+GRVYV+CSSNPKHKQRQG S+ A E   PS LF+     Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 61  EI--LPSSRI--GLASLISQKHQPTMLFGWRMGLASILSRKQN 99
           E+  LP   +  GLASL+ ++  PT  FGWR GLASIL ++ N
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]

BLAST of Sed0012264 vs. TAIR 10
Match: AT5G20180.2 (Ribosomal protein L36 )

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-26
Identity = 64/103 (62.14%), Postives = 76/103 (73.79%), Query Frame = 0


Query: 1   MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQGLSTLASEAPPPS-LFSRSEVKQ 60
           MKVRSSVKKMCEFC+TVKR+GRVYV+CSSNPKHKQRQG S+ A E   PS LF+     Q
Sbjct: 1   MKVRSSVKKMCEFCKTVKRRGRVYVICSSNPKHKQRQGFSSFAYEGITPSPLFAEPIASQ 60

Query: 61  EI--LPSSRI--GLASLISQKHQPTMLFGWRMGLASILSRKQN 99
           E+  LP   +  GLASL+ ++  PT  FGWR GLASIL ++ N
Sbjct: 61  ELVRLPGQGVSAGLASLLHKRPMPTAYFGWRSGLASILFKQGN 103

[Close]

BLAST of Sed0012264 vs. TAIR 10
Match: ATCG00760.1 (ribosomal protein L36 )

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 24/38 (63.16%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 1  MKVRSSVKKMCEFCRTVKRKGRVYVLCSSNPKHKQRQG 39
          MK+R+SV+K+CE CR ++R+GR+ V+C SNP+HKQRQG
Sbjct: 1  MKIRASVRKICEKCRLIRRRGRIIVIC-SNPRHKQRQG 37

The following BLAST results are available for this feature:

BLAST of Sed0012264 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879717.1	5.6e-38	85.00	uncharacterized protein LOC120071478 [Benincasa hispida]	[more]
XP_022933442.1	5.6e-38	85.00	uncharacterized protein LOC111440855 [Cucurbita moschata] >XP_023531008.1 unchar...	[more]
XP_022971996.1	1.6e-37	84.00	uncharacterized protein LOC111470644 [Cucurbita maxima]	[more]
KAG7021783.1	1.6e-37	84.00	rpmJ [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008443993.2	3.1e-36	83.00	PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo] >XP_008443994.2 P...	[more]

BLAST of Sed0012264 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3WAJ5	2.3e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus casei (strain BL23) OX=543734 GN=rpmJ...	[more]
Q035A6	2.3e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus paracasei (strain ATCC 334 / BCRC 170...	[more]
A5VLI2	3.9e-10	78.95	50S ribosomal protein L36 OS=Lactobacillus reuteri (strain DSM 20016) OX=557436 ...	[more]
B2G8V5	3.9e-10	78.95	50S ribosomal protein L36 OS=Lactobacillus reuteri (strain JCM 1112) OX=557433 G...	[more]
Q03PY0	5.1e-10	76.32	50S ribosomal protein L36 OS=Lactobacillus brevis (strain ATCC 367 / BCRC 12310 ...	[more]

BLAST of Sed0012264 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZS5	2.7e-38	85.00	Ribosomal protein OS=Cucurbita moschata OX=3662 GN=LOC111440855 PE=3 SV=1	[more]
A0A6J1I4R0	7.8e-38	84.00	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111470644 PE=3 SV=1	[more]
A0A1S3B8W2	1.5e-36	83.00	Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103487446 PE=3 SV=1	[more]
A0A5A7U4L3	1.5e-36	83.00	Ribosomal protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00...	[more]
A0A6J1CT08	1.9e-36	83.00	Ribosomal protein OS=Momordica charantia OX=3673 GN=LOC111014487 PE=3 SV=1	[more]

BLAST of Sed0012264 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20180.1	1.8e-26	62.14	Ribosomal protein L36	[more]
AT5G20180.2	1.8e-26	62.14	Ribosomal protein L36	[more]
ATCG00760.1	1.7e-08	63.16	ribosomal protein L36	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000473	Ribosomal protein L36	TIGRFAM	TIGR01022	TIGR01022	coord: 1..38 e-value: 8.5E-19 score: 65.4
IPR000473	Ribosomal protein L36	PFAM	PF00444	Ribosomal_L36	coord: 1..38 e-value: 6.6E-22 score: 77.4
IPR000473	Ribosomal protein L36	PROSITE	PS00828	RIBOSOMAL_L36	coord: 11..37
IPR000473	Ribosomal protein L36	HAMAP	MF_00251	Ribosomal_L36	coord: 1..38 score: 18.714386
None	No IPR available	PANTHER	PTHR18804	FAMILY NOT NAMED	coord: 1..97
None	No IPR available	PANTHER	PTHR18804:SF16	RIBOSOMAL PROTEIN	coord: 1..97
IPR035977	Ribosomal protein L36 superfamily	SUPERFAMILY	57840	Ribosomal protein L36	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012264.1	Sed0012264.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome