Sed0012177 (gene) Chayote v1

Overview


Name	Sed0012177
Type	gene
Organism	Sechium edule (Chayote v1)
Description	photosynthetic NDH subunit of subcomplex B 1, chloroplastic
Location	LG07: 5634683 .. 5638224 (+)
RNA-Seq Expression	Sed0012177
Synteny	Sed0012177

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGGCTTATCCAAATCCAAACATCCTTCCACACATTGTGAAGATCACATTGCCCTAACCAAACAGTAATGGAAACTCAATCCAAATCCTGCAAGAAAAAAAACCCAACTCTCAACCGCCATCCATGGCTACTTCTTCTCTACCCACCAAATCCCTCCCGCCATTTTCACCCACCTCGAGCTCCCCACCTTCTTCTCCTTCAACCCACTTCACCAAGCCGCTCTTTCTAACCCCACCGGACATTTCTCTCTGCACTTCCTCATCAGCCTCAAAACCTCAAATCGCCAGGTCCACCAAGAATCCATGGCTGGACCCGTTCGACGACGGCGACGACCCGGACATGGAATACGGCTCTCTCTTCTCCGACGGCAAGCAGGAAGAGGACCCTCGCCCGCCGGACAATCCCAACAATCCCTATGGGTTTTTGAAGTTTCCTCAGGGATACATGGTGGAAATCGCTTCCCTAGGTCTGAAAATCCGCGGCGATGTACGGCGGTGCTGCTGCGTGATCTCCGGCGGTGTTTATGAGAATCTCCTGTTTTTTCCGGCGATTCAGTTGATTAAGGATCGGTATCCTGGAGTTCAGGTCGATGTGGTGGCTTCGGCGAGGGGGAAACAGGCTTATGAATTGAACAAGAATGTGAGATGGGCTAATGTTTATGATCCGGAGGATTATTTTCCTGAACCGGCGGAGTACACTGACATGGTCGGATTGCTCAGGGTTAGTTCGTTTTATCTGCAACAATTTGGTTTGAAACTGATTAGAACCATATGACTAGTGATTCTACATTACTGACTGTTGGAAGGAATTTTAATATTTCTACATGAACTTGCATCAAACGGTTATTAAGACATTCACATTGAATATTTTTTCGGTTTTTAGGGGCTGAGATTTAACTTAGATGTAAGTTGTAGCCATCATGAGTTCGTCTAGTGGTCGAGAGGACTTTGAAGAACAAAAAAGTTTTGGGTTTACGACCAATTACCTATGACTTAATTTTCTACCAATTCCCTTGAGAGAAAAATGTAATAGGTCCGGTGATATGTCTTGTGAAAATAGTTAAAAGATGACACTCATGGATATCGAGATTTTGACTTAGATGTAATCATCATGACTCATGAGTTCATTTAGTGGTCAAAAGGATTGTGGTTAACCAAAAGGTTATGGATTTATGAGCTACCTACCTAACAATTAATTTTTTTATGAATTTTCTTGACAACCAAAAATTGTAGATAAAGTGCCCTCTGGCTGATCTGGAAATATTTTGACTTATATAGGAGAAATGGAGAAATTGAGATTGATTTGAGTGGTGCAACTTGTTTCATTGTTTGTGGCAGGGTAGGTATTATGATATGGTCTTGTCAACGAAGCTAGCAGGGTTTGGACATGCAGCGTTTCTGTTCATGACAACAGCCAGAGACAGGGTGAGCTACATTTATCCAGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTCAAACATTTAAACCAGATAGCTCCAACCTTTCTGATGGAGGATTCAACATGTGAGAATATTCAATGTTTTGGTCATAAACTTGTGCAAAAGATTCCTCCATTGATCTATTAGCTTAAGCTTTTGAGTTTAGTATTAGTTTGACGTAATAGCTGAGCCAGAATGAGGTTATTTGTTCCATTTCTTAGCAATGCCATTGTCTTTTCAATTTATATTGATGGTCACTTTTTGGGTCACGTGCTTATTTCCTAACCCACAAGGAGAATGACATAAAACTTAAAAGATTTTTTTTTTATACATATATATCATAACTTGATAGCTTTTAGATTTAGCATATTCCATAACTTATCAGGGTTTATTAGTAGTTTACTGTTTAATATTTAGACGAATTAGATTATTTCTCTTAGTTACAATGTCCAACCTTGTATGATCTAGGGAGAAGGTTTTGCCCCTAAATGAGTGAAGCATGGCTTTTATCAGGACACATGAAAACTGAAGAATTAATTAGAATTAGTTAACTCAAACTTCTACTTTATTATGCCTTGAAGGATGATTTTCATGATTTAGGTACCATCAAATGGTTGATTGGTTAGGGAGGCCTTTTCGCAGCGTTCCTAGGCAGCCCCTTCCTCCACTCAAAGTTTCGATTTCGAAAAAATTGAAGGAGGCTGTACAGGAAAAGTATAAGAAAGCAGGTGCTGAGAAAGGAAAATATATTGTGATTCATGGGATAGAATCAGATTCAAAAGCCTCAATGCAGTCAAAAGGTGATACTGATAGCTTGCTGCCCATTCAAGCCTGGGCTGAAATTGCGAATGTTATAAGGTAGATGTCATGTCAAATTCTTGATTTTTCAACAATAAAGAATGAGTAATAGGCTAGTACAATTAGATTGAAGGTACTAAAAAGCTACCTGCTACTTCTTTGATTTCACCTTTTTTTTTTCCTGATGATAATACTTTAGAATCTAAATACAGGGGATTTAAACCAGTTTTTGTCATCCCACATGAAAAAGATAGGGAAAATGTTGAGGAAGAGGTCGGAGATGATGCAAGCATCCTATTTATCACGACCCCGGGACAGGTATTTATAATGATCCATCTTTCTCTTTCTGTATCATAAAGTAAACTGTGAGAGGATGAATACAAAAAAACGCTTATCTTAAAAGAAATGTGGGAGGAATGTAAGGGAATTTACAGTTAAAAAAGGAGTTTTGTGGTAAAAGACAAGTGCGTAAACACTCCATTTTTTAGCTCAACAGGTCAGTGTTTAGAAACTTTGAACTTTTGTTTGGGAATATTTGCCTTGGTCATCTTAGATTGGCCTAAAACACTCCCATTTTTAATTTCTATCTGTAGCTAGCTGCTCTCATTAACGACTCGGCCGGTCTAATAGCCACAAACACCGCTGCTCTTCAACTCGCCATTGCTCGCGAAAAACCGAGGTCTTGATCTGTTTCTCCTTGACATGAACTCAATAGTTTGTTTACTGATCTTAAAATCTTCCACTTGATACTATTTGAAAAGGACTGTGCTTGACGTGCATATATATTTTGGTGCCCAATGTTTGCAGCATTGCATTATTTTGCTCCGAAGAGAAAGCAAAACTATTTGTTCCCTCAGAAACGAAGGGATGCATCACAGTATCGTCAGCAACGGGACGACTAATCGACATCGACATCAGCAAGGTTAAGAAGGCCATACAGAGTCTTGAAGTGCCTTTAGCTCTTGCTTTTAAGTGACATAATGGATTTTCTTACCCTATTTCTGTTACCATCAGTTGTAAATCAAGGCATTGGCAATGAAGAAGATAAGTAATTGTATATGTTCAGTCTGGTCTAACTGTGTTTTCAAAGTTGTTTTTTTATTTGATTTCTTTATTGGTTGCTTGGTTTAAGATGGAATCGAATCATCGAATTTTAGATTGGTACTCTATGCTTTTCCACTAAAGTCATACTCAAATAGGGGTCTGATTAACAAAATTTAGAGAATTAAAAAACCCAAACTGCATTGTTCTTAATGTAGAAGTCTCTAGATGCTTGCATTTTAAAAATAATTGTACCAC

mRNA sequence

GGAGGGCTTATCCAAATCCAAACATCCTTCCACACATTGTGAAGATCACATTGCCCTAACCAAACAGTAATGGAAACTCAATCCAAATCCTGCAAGAAAAAAAACCCAACTCTCAACCGCCATCCATGGCTACTTCTTCTCTACCCACCAAATCCCTCCCGCCATTTTCACCCACCTCGAGCTCCCCACCTTCTTCTCCTTCAACCCACTTCACCAAGCCGCTCTTTCTAACCCCACCGGACATTTCTCTCTGCACTTCCTCATCAGCCTCAAAACCTCAAATCGCCAGGTCCACCAAGAATCCATGGCTGGACCCGTTCGACGACGGCGACGACCCGGACATGGAATACGGCTCTCTCTTCTCCGACGGCAAGCAGGAAGAGGACCCTCGCCCGCCGGACAATCCCAACAATCCCTATGGGTTTTTGAAGTTTCCTCAGGGATACATGGTGGAAATCGCTTCCCTAGGTCTGAAAATCCGCGGCGATGTACGGCGGTGCTGCTGCGTGATCTCCGGCGGTGTTTATGAGAATCTCCTGTTTTTTCCGGCGATTCAGTTGATTAAGGATCGGTATCCTGGAGTTCAGGTCGATGTGGTGGCTTCGGCGAGGGGGAAACAGGCTTATGAATTGAACAAGAATGTGAGATGGGCTAATGTTTATGATCCGGAGGATTATTTTCCTGAACCGGCGGAGTACACTGACATGGTCGGATTGCTCAGGGGTAGGTATTATGATATGGTCTTGTCAACGAAGCTAGCAGGGTTTGGACATGCAGCGTTTCTGTTCATGACAACAGCCAGAGACAGGGTGAGCTACATTTATCCAGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTCAAACATTTAAACCAGATAGCTCCAACCTTTCTGATGGAGGATTCAACATGTACCATCAAATGGTTGATTGGTTAGGGAGGCCTTTTCGCAGCGTTCCTAGGCAGCCCCTTCCTCCACTCAAAGTTTCGATTTCGAAAAAATTGAAGGAGGCTGTACAGGAAAAGTATAAGAAAGCAGGTGCTGAGAAAGGAAAATATATTGTGATTCATGGGATAGAATCAGATTCAAAAGCCTCAATGCAGTCAAAAGGTGATACTGATAGCTTGCTGCCCATTCAAGCCTGGGCTGAAATTGCGAATGTTATAAGGGGATTTAAACCAGTTTTTGTCATCCCACATGAAAAAGATAGGGAAAATGTTGAGGAAGAGGTCGGAGATGATGCAAGCATCCTATTTATCACGACCCCGGGACAGCTAGCTGCTCTCATTAACGACTCGGCCGGTCTAATAGCCACAAACACCGCTGCTCTTCAACTCGCCATTGCTCGCGAAAAACCGAGCATTGCATTATTTTGCTCCGAAGAGAAAGCAAAACTATTTGTTCCCTCAGAAACGAAGGGATGCATCACAGTATCGTCAGCAACGGGACGACTAATCGACATCGACATCAGCAAGGTTAAGAAGGCCATACAGAGTCTTGAAGTGCCTTTAGCTCTTGCTTTTAAGTGACATAATGGATTTTCTTACCCTATTTCTGTTACCATCAGTTGTAAATCAAGGCATTGGCAATGAAGAAGATAAGTAATTGTATATGTTCAGTCTGGTCTAACTGTGTTTTCAAAGTTGTTTTTTTATTTGATTTCTTTATTGGTTGCTTGGTTTAAGATGGAATCGAATCATCGAATTTTAGATTGGTACTCTATGCTTTTCCACTAAAGTCATACTCAAATAGGGGTCTGATTAACAAAATTTAGAGAATTAAAAAACCCAAACTGCATTGTTCTTAATGTAGAAGTCTCTAGATGCTTGCATTTTAAAAATAATTGTACCAC

Coding sequence (CDS)

ATGGCTACTTCTTCTCTACCCACCAAATCCCTCCCGCCATTTTCACCCACCTCGAGCTCCCCACCTTCTTCTCCTTCAACCCACTTCACCAAGCCGCTCTTTCTAACCCCACCGGACATTTCTCTCTGCACTTCCTCATCAGCCTCAAAACCTCAAATCGCCAGGTCCACCAAGAATCCATGGCTGGACCCGTTCGACGACGGCGACGACCCGGACATGGAATACGGCTCTCTCTTCTCCGACGGCAAGCAGGAAGAGGACCCTCGCCCGCCGGACAATCCCAACAATCCCTATGGGTTTTTGAAGTTTCCTCAGGGATACATGGTGGAAATCGCTTCCCTAGGTCTGAAAATCCGCGGCGATGTACGGCGGTGCTGCTGCGTGATCTCCGGCGGTGTTTATGAGAATCTCCTGTTTTTTCCGGCGATTCAGTTGATTAAGGATCGGTATCCTGGAGTTCAGGTCGATGTGGTGGCTTCGGCGAGGGGGAAACAGGCTTATGAATTGAACAAGAATGTGAGATGGGCTAATGTTTATGATCCGGAGGATTATTTTCCTGAACCGGCGGAGTACACTGACATGGTCGGATTGCTCAGGGGTAGGTATTATGATATGGTCTTGTCAACGAAGCTAGCAGGGTTTGGACATGCAGCGTTTCTGTTCATGACAACAGCCAGAGACAGGGTGAGCTACATTTATCCAGATGTGAATGCTGCTGGAGCAGGGCTTTTCTTGTCTCAAACATTTAAACCAGATAGCTCCAACCTTTCTGATGGAGGATTCAACATGTACCATCAAATGGTTGATTGGTTAGGGAGGCCTTTTCGCAGCGTTCCTAGGCAGCCCCTTCCTCCACTCAAAGTTTCGATTTCGAAAAAATTGAAGGAGGCTGTACAGGAAAAGTATAAGAAAGCAGGTGCTGAGAAAGGAAAATATATTGTGATTCATGGGATAGAATCAGATTCAAAAGCCTCAATGCAGTCAAAAGGTGATACTGATAGCTTGCTGCCCATTCAAGCCTGGGCTGAAATTGCGAATGTTATAAGGGGATTTAAACCAGTTTTTGTCATCCCACATGAAAAAGATAGGGAAAATGTTGAGGAAGAGGTCGGAGATGATGCAAGCATCCTATTTATCACGACCCCGGGACAGCTAGCTGCTCTCATTAACGACTCGGCCGGTCTAATAGCCACAAACACCGCTGCTCTTCAACTCGCCATTGCTCGCGAAAAACCGAGCATTGCATTATTTTGCTCCGAAGAGAAAGCAAAACTATTTGTTCCCTCAGAAACGAAGGGATGCATCACAGTATCGTCAGCAACGGGACGACTAATCGACATCGACATCAGCAAGGTTAAGAAGGCCATACAGAGTCTTGAAGTGCCTTTAGCTCTTGCTTTTAAGTGA

Protein sequence

MATSSLPTKSLPPFSPTSSSPPSSPSTHFTKPLFLTPPDISLCTSSSASKPQIARSTKNPWLDPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKIRGDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANVYDPEDYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNAAGAGLFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAVQEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIPHEKDRENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFCSEEKAKLFVPSETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLALAFK

Homology

[Close]

BLAST of Sed0012177 vs. NCBI nr
Match: XP_038896546.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 842.0 bits (2174), Expect = 2.4e-240
Identity = 423/470 (90.00%), Postives = 445/470 (94.68%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFSPTSSSPPSSPSTHFTKPLFLTPPDISLCT-SSSASKPQIARSTKN 60
           MATSSLPTKSLPPFSPTSS  PSSPSTHFTKPLFL PPDISL T SSS+SK  I  S KN
Sbjct: 1   MATSSLPTKSLPPFSPTSSFSPSSPSTHFTKPLFLAPPDISLSTSSSSSSKLLIPSSKKN 60

Query: 61  PWLDPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKIR 120
            WLDPFDDGDDP+MEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLK+R
Sbjct: 61  QWLDPFDDGDDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR 120

Query: 121 GDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANVY 180
           GDVRRCCCV+SGGVYENLLFFPAIQL+KDRYPGVQ+DVVASARGKQ YELNKNVRW+NVY
Sbjct: 121 GDVRRCCCVMSGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY 180

Query: 181 DPEDYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNAA 240
           DP+DYFPEPAEYTDMVGLL+GRYYDMVLSTKLAG GHA FLFMTTARDRVSYIYPDVNAA
Sbjct: 181 DPDDYFPEPAEYTDMVGLLKGRYYDMVLSTKLAGLGHAVFLFMTTARDRVSYIYPDVNAA 240

Query: 241 GAGLFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAVQ 300
           GAGLFLS+TFKPDSSNLS+GGFNMYHQMVDWLGRPFRSVPR P+PPLKVSIS+KLKE V 
Sbjct: 241 GAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEVVA 300

Query: 301 EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIPH 360
           EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN +RGFKPVFVIPH
Sbjct: 301 EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAVRGFKPVFVIPH 360

Query: 361 EKDRENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFCS 420
           EK+RENVEEEVGDDASI+FITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFCS
Sbjct: 361 EKERENVEEEVGDDASIVFITTPGQLAALINDSAGVIATNTAAVQLAIAREKPSIALFCS 420

Query: 421 EEKAKLFVP-SETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLALAFK 469
           EEKAKLFVP +E K CITVSSATGRL DID+  VKKAIQS EVPLALAF+
Sbjct: 421 EEKAKLFVPDAEAKRCITVSSATGRLTDIDLGTVKKAIQSFEVPLALAFQ 470

[Close]

BLAST of Sed0012177 vs. NCBI nr
Match: XP_022953552.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 833.9 bits (2153), Expect = 6.6e-238
Identity = 420/471 (89.17%), Postives = 445/471 (94.48%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFSPTSSSPPSSPSTHFTKPLFLTPPDISLCTSSSA-SKPQI-ARSTK 60
           MATSSLPTKSLPPF P SS PPSSPSTHFTKP FL PPDISL TSSS+ SK  I + + K
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKI 120
           NPWLDPFDDGDDPDMEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLK+
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANV 180
           RGDVRRCCCVISGGVYENLLFFPAIQL+KDRYPGVQ+DVVASARGKQ YELNKNVRW+NV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPEDYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNA 240
           YDP+DYFPEPA+YTDMVGLL+GRYYDMVLSTKLAG GHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAV 300
           AGAGLFLSQTFKPDSSNLS+GGFNMYHQMVDWLGRPFRSVPR P+PPLKVSIS+KLKE V
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 QEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIP 360
           +EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN IRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKDRENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFC 420
           HEK+RENVEEEVGD+ASI+FITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVP-SETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLALAFK 469
           SEEKAKLFVP SE K CI VSSATGRLIDID+  VK+AIQS EVPLALAF+
Sbjct: 421 SEEKAKLFVPDSEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Sed0012177 vs. NCBI nr
Match: XP_022145001.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Momordica charantia])

HSP 1 Score: 832.4 bits (2149), Expect = 1.9e-237
Identity = 417/469 (88.91%), Postives = 441/469 (94.03%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFSPTSSSPPSSPSTHFTKPLFLTPPDIS-LCTSSSASKPQIARSTKN 60
           MATSSLPTKSLPPF P+S+SPPSSPSTHFTKPLFL PPDIS L T+ S  K  I  + KN
Sbjct: 3   MATSSLPTKSLPPFLPSSASPPSSPSTHFTKPLFLAPPDISPLSTTPSPPKSHIPTAKKN 62

Query: 61  PWLDPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKIR 120
           PW DPFDDGDDPDMEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLK+R
Sbjct: 63  PWFDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR 122

Query: 121 GDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANVY 180
           GDVRRCCCVISGGVYENLLFFPAIQL+KDRYPGVQ+DVVASARGKQ YELNKNVRW+NVY
Sbjct: 123 GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY 182

Query: 181 DPEDYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNAA 240
           DP+DYFPEPAEYTDMVGLL+ RYYDMVLSTKLAG GHA FLFMTTARDRVSYIYPDVNAA
Sbjct: 183 DPDDYFPEPAEYTDMVGLLKSRYYDMVLSTKLAGVGHAVFLFMTTARDRVSYIYPDVNAA 242

Query: 241 GAGLFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAVQ 300
           GAGLFLS+TFKPDSSNLS+GGFNMYHQMVDWLGRPFRSVPR P+PPLKV IS+KLKE V+
Sbjct: 243 GAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVLISRKLKEVVE 302

Query: 301 EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIPH 360
           EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIA+ IRGFKPVFVIPH
Sbjct: 303 EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIASTIRGFKPVFVIPH 362

Query: 361 EKDRENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFCS 420
           EK+RENVEEEVGDDA ILFITTPGQLAALINDSAGLIATNTAA+QLAIAREKPSIALF S
Sbjct: 363 EKERENVEEEVGDDAGILFITTPGQLAALINDSAGLIATNTAAIQLAIAREKPSIALFSS 422

Query: 421 EEKAKLFVP-SETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLALAF 468
           +EKAKLFVP +E+K CITVSSATGRLIDID+  VK+AIQS EVPLALAF
Sbjct: 423 DEKAKLFVPDAESKRCITVSSATGRLIDIDMGTVKRAIQSFEVPLALAF 471

[Close]

BLAST of Sed0012177 vs. NCBI nr
Match: KAG6575629.1 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014183.1 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 831.2 bits (2146), Expect = 4.3e-237
Identity = 418/471 (88.75%), Postives = 444/471 (94.27%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFSPTSSSPPSSPSTHFTKPLFLTPPDISLCTSSSA-SKPQI-ARSTK 60
           MATSSLPTKSLPPF P SS PPSSPSTHFTKP FL PPDISL TSSS+ SK  I + + K
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKI 120
           NPWLDPFDDGDDPDMEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLK+
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANV 180
           RGDVRRCCCVISGGVYENLLFFPAIQL+KDRYPGVQ+DVVASARGKQ YELNKNVRW+NV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPEDYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNA 240
           YDP+DYFPEPA+YTDMVGLL+GRYYDMVLSTKLAG GHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAV 300
           AGAGLFLSQTFKPDSSNLS+GGFNMYHQMVDWLGRPFRSVPR P+PPLKVSIS+KLKE V
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 QEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIP 360
           +EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN IRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKDRENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFC 420
           HEK+RENVEEEVGD+ASI+FITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVP-SETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLALAFK 469
           SEEKAKLFVP +E K CI VSS TGRLIDID+  VK+AIQS EVPLALAF+
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSTTGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Sed0012177 vs. NCBI nr
Match: XP_022992479.1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 828.6 bits (2139), Expect = 2.8e-236
Identity = 417/471 (88.54%), Postives = 443/471 (94.06%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFSPTSSSPPSSPSTHFTKPLFLTPPDISLCTSSSA-SKPQI-ARSTK 60
           MATSSLPTKSLPPF P SS PPSSPSTHFTKP FL PPDISL TSSS+ SK  I + + K
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKI 120
           NPWLDPFDDGDDPDMEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLK+
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANV 180
           RGDVRRCCCVISGGVYENLLFFP IQL+KDRYPGVQ+DVVASARGKQ YELNKNVRW+NV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPTIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPEDYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNA 240
           YDP+DYFPEPA+YTDMVGLL+GRYYDMVLSTKLAG GHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAV 300
           AGAGLFLSQTFKP+SSNLS+GGFNMYHQM DWLGRPFRSVPR P+PPLKVSIS+KLKE V
Sbjct: 241 AGAGLFLSQTFKPESSNLSEGGFNMYHQMADWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 QEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIP 360
           +EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN IRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKDRENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFC 420
           HEK+RENVEEEVGD+ASI+FITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVP-SETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLALAFK 469
           SEEKAKLFVP +E K CI VSSATGRLIDID+  VK+AIQS EVPLALAF+
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Sed0012177 vs. ExPASy Swiss-Prot
Match: Q9S9N6 (Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB1 PE=2 SV=1)

HSP 1 Score: 646.4 bits (1666), Expect = 2.6e-184
Identity = 334/465 (71.83%), Postives = 380/465 (81.72%), Query Frame = 0


Query: 4   SSLPTKSLP-PFSPTSSSPPSSPSTHFTKPLFLTPPDISLCTSSSASKPQIARSTKNPWL 63
           SSLP   LP P SP   +PP S S    KPL        L TS S+      +   NPWL
Sbjct: 3   SSLPL--LPKPISPFFKTPPFSTS----KPLVFLNFQTRL-TSRSSDVSVNLKKKNNPWL 62

Query: 64  DPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKIRGDV 123
           DPFD G+DPD EYGSLF+DGKQ+EDPRPPDNP+NPYGFLKFP+GY VE+ASL LKIRGDV
Sbjct: 63  DPFDSGEDPDNEYGSLFADGKQDEDPRPPDNPDNPYGFLKFPKGYTVELASLPLKIRGDV 122

Query: 124 RRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANVYDPE 183
           RRCCCVISGGVYENLLFFP IQLIKDRYPGVQVD++ + RGKQ YELNKNVRWANVYDP+
Sbjct: 123 RRCCCVISGGVYENLLFFPTIQLIKDRYPGVQVDILTTERGKQTYELNKNVRWANVYDPD 182

Query: 184 DYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNAAGAG 243
           D++PEPAEYTDM+GLL+GRYYDMVLSTKLAG GHAAFLFMTTARDRVSYIYP+VN+AGAG
Sbjct: 183 DHWPEPAEYTDMIGLLKGRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAG 242

Query: 244 LFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAVQEKY 303
           L LS+TF  +++NLS+ G++MY QM DWLGRPFRSVPR PL PL+VSIS+K+KE V  KY
Sbjct: 243 LMLSETFTAENTNLSELGYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVVAAKY 302

Query: 304 KKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIPHEKD 363
           + AGA  GK+IVIHGIESDSKASMQSKGD DSLL ++ WA+I   +RGFKPVFVIPHEK+
Sbjct: 303 RNAGAVTGKFIVIHGIESDSKASMQSKGDADSLLSLEKWAKIIKGVRGFKPVFVIPHEKE 362

Query: 364 RENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFCSEEK 423
           RENVE+ VGDD SI+FITTPGQLAALINDSAG+IATNTAA+QLA AR+KP I LF SEEK
Sbjct: 363 RENVEDFVGDDTSIVFITTPGQLAALINDSAGVIATNTAAIQLANARDKPCIGLFSSEEK 422

Query: 424 AKLFVP--SETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLAL 466
            KLFVP   E   C+ ++S TG+L DIDI  VK A+Q  E  LAL
Sbjct: 423 GKLFVPYAEEKSNCVIIASKTGKLADIDIGTVKNAMQVFEGSLAL 460

[Close]

BLAST of Sed0012177 vs. ExPASy TrEMBL
Match: A0A6J1GNJ2 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111456057 PE=4 SV=1)

HSP 1 Score: 833.9 bits (2153), Expect = 3.2e-238
Identity = 420/471 (89.17%), Postives = 445/471 (94.48%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFSPTSSSPPSSPSTHFTKPLFLTPPDISLCTSSSA-SKPQI-ARSTK 60
           MATSSLPTKSLPPF P SS PPSSPSTHFTKP FL PPDISL TSSS+ SK  I + + K
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKI 120
           NPWLDPFDDGDDPDMEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVE+ASLGLK+
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEVASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANV 180
           RGDVRRCCCVISGGVYENLLFFPAIQL+KDRYPGVQ+DVVASARGKQ YELNKNVRW+NV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPEDYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNA 240
           YDP+DYFPEPA+YTDMVGLL+GRYYDMVLSTKLAG GHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAV 300
           AGAGLFLSQTFKPDSSNLS+GGFNMYHQMVDWLGRPFRSVPR P+PPLKVSIS+KLKE V
Sbjct: 241 AGAGLFLSQTFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 QEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIP 360
           +EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN IRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKDRENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFC 420
           HEK+RENVEEEVGD+ASI+FITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVP-SETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLALAFK 469
           SEEKAKLFVP SE K CI VSSATGRLIDID+  VK+AIQS EVPLALAF+
Sbjct: 421 SEEKAKLFVPDSEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Sed0012177 vs. ExPASy TrEMBL
Match: A0A6J1CV27 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111014527 PE=4 SV=1)

HSP 1 Score: 832.4 bits (2149), Expect = 9.3e-238
Identity = 417/469 (88.91%), Postives = 441/469 (94.03%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFSPTSSSPPSSPSTHFTKPLFLTPPDIS-LCTSSSASKPQIARSTKN 60
           MATSSLPTKSLPPF P+S+SPPSSPSTHFTKPLFL PPDIS L T+ S  K  I  + KN
Sbjct: 3   MATSSLPTKSLPPFLPSSASPPSSPSTHFTKPLFLAPPDISPLSTTPSPPKSHIPTAKKN 62

Query: 61  PWLDPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKIR 120
           PW DPFDDGDDPDMEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLK+R
Sbjct: 63  PWFDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLR 122

Query: 121 GDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANVY 180
           GDVRRCCCVISGGVYENLLFFPAIQL+KDRYPGVQ+DVVASARGKQ YELNKNVRW+NVY
Sbjct: 123 GDVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVY 182

Query: 181 DPEDYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNAA 240
           DP+DYFPEPAEYTDMVGLL+ RYYDMVLSTKLAG GHA FLFMTTARDRVSYIYPDVNAA
Sbjct: 183 DPDDYFPEPAEYTDMVGLLKSRYYDMVLSTKLAGVGHAVFLFMTTARDRVSYIYPDVNAA 242

Query: 241 GAGLFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAVQ 300
           GAGLFLS+TFKPDSSNLS+GGFNMYHQMVDWLGRPFRSVPR P+PPLKV IS+KLKE V+
Sbjct: 243 GAGLFLSETFKPDSSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVLISRKLKEVVE 302

Query: 301 EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIPH 360
           EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIA+ IRGFKPVFVIPH
Sbjct: 303 EKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIASTIRGFKPVFVIPH 362

Query: 361 EKDRENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFCS 420
           EK+RENVEEEVGDDA ILFITTPGQLAALINDSAGLIATNTAA+QLAIAREKPSIALF S
Sbjct: 363 EKERENVEEEVGDDAGILFITTPGQLAALINDSAGLIATNTAAIQLAIAREKPSIALFSS 422

Query: 421 EEKAKLFVP-SETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLALAF 468
           +EKAKLFVP +E+K CITVSSATGRLIDID+  VK+AIQS EVPLALAF
Sbjct: 423 DEKAKLFVPDAESKRCITVSSATGRLIDIDMGTVKRAIQSFEVPLALAF 471

[Close]

BLAST of Sed0012177 vs. ExPASy TrEMBL
Match: A0A6J1JXN2 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488799 PE=4 SV=1)

HSP 1 Score: 828.6 bits (2139), Expect = 1.3e-236
Identity = 417/471 (88.54%), Postives = 443/471 (94.06%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFSPTSSSPPSSPSTHFTKPLFLTPPDISLCTSSSA-SKPQI-ARSTK 60
           MATSSLPTKSLPPF P SS PPSSPSTHFTKP FL PPDISL TSSS+ SK  I + + K
Sbjct: 1   MATSSLPTKSLPPFLPASSFPPSSPSTHFTKPPFLAPPDISLSTSSSSPSKLHIPSCAKK 60

Query: 61  NPWLDPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKI 120
           NPWLDPFDDGDDPDMEYGSLF+DGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLK+
Sbjct: 61  NPWLDPFDDGDDPDMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKL 120

Query: 121 RGDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANV 180
           RGDVRRCCCVISGGVYENLLFFP IQL+KDRYPGVQ+DVVASARGKQ YELNKNVRW+NV
Sbjct: 121 RGDVRRCCCVISGGVYENLLFFPTIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNV 180

Query: 181 YDPEDYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNA 240
           YDP+DYFPEPA+YTDMVGLL+GRYYDMVLSTKLAG GHAAFLFMTTARDRVSYIYPDVNA
Sbjct: 181 YDPDDYFPEPADYTDMVGLLKGRYYDMVLSTKLAGIGHAAFLFMTTARDRVSYIYPDVNA 240

Query: 241 AGAGLFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAV 300
           AGAGLFLSQTFKP+SSNLS+GGFNMYHQM DWLGRPFRSVPR P+PPLKVSIS+KLKE V
Sbjct: 241 AGAGLFLSQTFKPESSNLSEGGFNMYHQMADWLGRPFRSVPRHPVPPLKVSISRKLKEIV 300

Query: 301 QEKYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIP 360
           +EKY +AG EKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIAN IRGFKPVFVIP
Sbjct: 301 KEKYNQAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANAIRGFKPVFVIP 360

Query: 361 HEKDRENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFC 420
           HEK+RENVEEEVGD+ASI+FITTPGQLAALINDSAG+IATNTAA+QLAIAREKPSIALFC
Sbjct: 361 HEKERENVEEEVGDNASIVFITTPGQLAALINDSAGVIATNTAAIQLAIAREKPSIALFC 420

Query: 421 SEEKAKLFVP-SETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLALAFK 469
           SEEKAKLFVP +E K CI VSSATGRLIDID+  VK+AIQS EVPLALAF+
Sbjct: 421 SEEKAKLFVPDAEAKRCIAVSSATGRLIDIDMGTVKRAIQSFEVPLALAFQ 471

[Close]

BLAST of Sed0012177 vs. ExPASy TrEMBL
Match: A0A5A7UYW0 (Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001650 PE=4 SV=1)

HSP 1 Score: 823.5 bits (2126), Expect = 4.3e-235
Identity = 413/469 (88.06%), Postives = 441/469 (94.03%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFSPTSSSPPSSPSTHFTKPLFLTPPDISLCTSSSASKPQIARSTKNP 60
           MATSSLPTKSLPPF PTSS PPSSPSTHFTKPLFL+P  ISL TS   SK +I  S KNP
Sbjct: 1   MATSSLPTKSLPPFLPTSSFPPSSPSTHFTKPLFLSPLLISLSTS---SKLRIPCSKKNP 60

Query: 61  WLDPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKIRG 120
           W DPFDDG+DP+MEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLK+RG
Sbjct: 61  WFDPFDDGEDPEMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLRG 120

Query: 121 DVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANVYD 180
           DVRRCCCVISGGVYENLLFFPAIQL+KDRYPGVQ+DVVASARGKQ YELNKNVRW+NVYD
Sbjct: 121 DVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYD 180

Query: 181 PEDYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNAAG 240
           P+DYFPEPAEYTDMVG+L+GRYYDMVLSTKLAG GHA FLFMTTARDRVSYIYPDVNAAG
Sbjct: 181 PDDYFPEPAEYTDMVGVLKGRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAG 240

Query: 241 AGLFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAVQE 300
           AGLFLS+TFKP+SSNLS+GGFNMYHQMVDWLGRPFRSVPR P+PPLKVSI++KLKE + E
Sbjct: 241 AGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAE 300

Query: 301 KYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIPHE 360
           KYKKAG EKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIAN IRGFKPVFVIPHE
Sbjct: 301 KYKKAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIPHE 360

Query: 361 KDRENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFCSE 420
           K+RENVEEEVG++ASI+FITTPGQLAALINDSAGLIATNTAA+QLAIAREKPSIALFCSE
Sbjct: 361 KERENVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSE 420

Query: 421 EKAKLFVP-SETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLALAFK 469
           EKAKLFVP +E K CITVSS TGRLIDID+  +KKAIQS EVPLALAF+
Sbjct: 421 EKAKLFVPDAEAKRCITVSSTTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Sed0012177 vs. ExPASy TrEMBL
Match: A0A1S3CEK1 (photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499839 PE=4 SV=1)

HSP 1 Score: 820.5 bits (2118), Expect = 3.7e-234
Identity = 412/469 (87.85%), Postives = 440/469 (93.82%), Query Frame = 0


Query: 1   MATSSLPTKSLPPFSPTSSSPPSSPSTHFTKPLFLTPPDISLCTSSSASKPQIARSTKNP 60
           MATSSLPTKSLPPF PTSS PPSSPSTHFTKPLFL+P  ISL TS   SK +I  S KNP
Sbjct: 1   MATSSLPTKSLPPFLPTSSFPPSSPSTHFTKPLFLSPLLISLSTS---SKLRIPCSKKNP 60

Query: 61  WLDPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKIRG 120
           W DPFDDG+DP+MEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLK+RG
Sbjct: 61  WFDPFDDGEDPEMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKLRG 120

Query: 121 DVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANVYD 180
           DVRRCCCVISGGVYENLLFFPAIQL+KDRYPGVQ+DVVASARGKQ YELNKNVRW+NVYD
Sbjct: 121 DVRRCCCVISGGVYENLLFFPAIQLLKDRYPGVQIDVVASARGKQTYELNKNVRWSNVYD 180

Query: 181 PEDYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNAAG 240
           P+DYFPEPAEYTDMVG+L+GRYYDMVLSTKLAG GHA FLFMTTARDRVSYIYPDVNAAG
Sbjct: 181 PDDYFPEPAEYTDMVGVLKGRYYDMVLSTKLAGIGHAVFLFMTTARDRVSYIYPDVNAAG 240

Query: 241 AGLFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAVQE 300
           AGLFLS+TFKP+SSNLS+GGFNMYHQMVDWLGRPFRSVPR P+PPLKVSI++KLKE + E
Sbjct: 241 AGLFLSETFKPESSNLSEGGFNMYHQMVDWLGRPFRSVPRHPVPPLKVSIARKLKEVIAE 300

Query: 301 KYKKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIPHE 360
           KYKKAG EKGKYIVIHGIESDSKASMQSKGDTDSLLPI+AWAEIAN IRGFKPVFVIP E
Sbjct: 301 KYKKAGVEKGKYIVIHGIESDSKASMQSKGDTDSLLPIRAWAEIANCIRGFKPVFVIPRE 360

Query: 361 KDRENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFCSE 420
           K+RENVEEEVG++ASI+FITTPGQLAALINDSAGLIATNTAA+QLAIAREKPSIALFCSE
Sbjct: 361 KERENVEEEVGNNASIVFITTPGQLAALINDSAGLIATNTAAVQLAIAREKPSIALFCSE 420

Query: 421 EKAKLFVP-SETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLALAFK 469
           EKAKLFVP +E K CITVSS TGRLIDID+  +KKAIQS EVPLALAF+
Sbjct: 421 EKAKLFVPDAEAKRCITVSSTTGRLIDIDMGTIKKAIQSFEVPLALAFQ 466

[Close]

BLAST of Sed0012177 vs. TAIR 10
Match: AT1G15980.1 (NDH-dependent cyclic electron flow 1 )

HSP 1 Score: 646.4 bits (1666), Expect = 1.8e-185
Identity = 334/465 (71.83%), Postives = 380/465 (81.72%), Query Frame = 0


Query: 4   SSLPTKSLP-PFSPTSSSPPSSPSTHFTKPLFLTPPDISLCTSSSASKPQIARSTKNPWL 63
           SSLP   LP P SP   +PP S S    KPL        L TS S+      +   NPWL
Sbjct: 3   SSLPL--LPKPISPFFKTPPFSTS----KPLVFLNFQTRL-TSRSSDVSVNLKKKNNPWL 62

Query: 64  DPFDDGDDPDMEYGSLFSDGKQEEDPRPPDNPNNPYGFLKFPQGYMVEIASLGLKIRGDV 123
           DPFD G+DPD EYGSLF+DGKQ+EDPRPPDNP+NPYGFLKFP+GY VE+ASL LKIRGDV
Sbjct: 63  DPFDSGEDPDNEYGSLFADGKQDEDPRPPDNPDNPYGFLKFPKGYTVELASLPLKIRGDV 122

Query: 124 RRCCCVISGGVYENLLFFPAIQLIKDRYPGVQVDVVASARGKQAYELNKNVRWANVYDPE 183
           RRCCCVISGGVYENLLFFP IQLIKDRYPGVQVD++ + RGKQ YELNKNVRWANVYDP+
Sbjct: 123 RRCCCVISGGVYENLLFFPTIQLIKDRYPGVQVDILTTERGKQTYELNKNVRWANVYDPD 182

Query: 184 DYFPEPAEYTDMVGLLRGRYYDMVLSTKLAGFGHAAFLFMTTARDRVSYIYPDVNAAGAG 243
           D++PEPAEYTDM+GLL+GRYYDMVLSTKLAG GHAAFLFMTTARDRVSYIYP+VN+AGAG
Sbjct: 183 DHWPEPAEYTDMIGLLKGRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAG 242

Query: 244 LFLSQTFKPDSSNLSDGGFNMYHQMVDWLGRPFRSVPRQPLPPLKVSISKKLKEAVQEKY 303
           L LS+TF  +++NLS+ G++MY QM DWLGRPFRSVPR PL PL+VSIS+K+KE V  KY
Sbjct: 243 LMLSETFTAENTNLSELGYSMYTQMEDWLGRPFRSVPRTPLLPLRVSISRKVKEVVAAKY 302

Query: 304 KKAGAEKGKYIVIHGIESDSKASMQSKGDTDSLLPIQAWAEIANVIRGFKPVFVIPHEKD 363
           + AGA  GK+IVIHGIESDSKASMQSKGD DSLL ++ WA+I   +RGFKPVFVIPHEK+
Sbjct: 303 RNAGAVTGKFIVIHGIESDSKASMQSKGDADSLLSLEKWAKIIKGVRGFKPVFVIPHEKE 362

Query: 364 RENVEEEVGDDASILFITTPGQLAALINDSAGLIATNTAALQLAIAREKPSIALFCSEEK 423
           RENVE+ VGDD SI+FITTPGQLAALINDSAG+IATNTAA+QLA AR+KP I LF SEEK
Sbjct: 363 RENVEDFVGDDTSIVFITTPGQLAALINDSAGVIATNTAAIQLANARDKPCIGLFSSEEK 422

Query: 424 AKLFVP--SETKGCITVSSATGRLIDIDISKVKKAIQSLEVPLAL 466
            KLFVP   E   C+ ++S TG+L DIDI  VK A+Q  E  LAL
Sbjct: 423 GKLFVPYAEEKSNCVIIASKTGKLADIDIGTVKNAMQVFEGSLAL 460

The following BLAST results are available for this feature:

BLAST of Sed0012177 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896546.1	2.4e-240	90.00	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida]	[more]
XP_022953552.1	6.6e-238	89.17	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita moschata]	[more]
XP_022145001.1	1.9e-237	88.91	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Momordica charantia...	[more]
KAG6575629.1	4.3e-237	88.75	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita ...	[more]
XP_022992479.1	2.8e-236	88.54	photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucurbita maxima]	[more]

BLAST of Sed0012177 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9N6	2.6e-184	71.83	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Sed0012177 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNJ2	3.2e-238	89.17	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita moschat...	[more]
A0A6J1CV27	9.3e-238	88.91	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Momordica charant...	[more]
A0A6J1JXN2	1.3e-236	88.54	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucurbita maxima ...	[more]
A0A5A7UYW0	4.3e-235	88.06	Photosynthetic NDH subunit of subcomplex B 1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3CEK1	3.7e-234	87.85	photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Cucumis melo OX=3...	[more]

BLAST of Sed0012177 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15980.1	1.8e-185	71.83	NDH-dependent cyclic electron flow 1	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.2000	Glycogen Phosphorylase B;	coord: 136..269 e-value: 4.3E-9 score: 38.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..97
None	No IPR available	SUPERFAMILY	53756	UDP-Glycosyltransferase/glycogen phosphorylase	coord: 136..368
IPR044983	Photosynthetic NDH subunit of subcomplex B 1, chloroplastic	PANTHER	PTHR37698	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 1, CHLOROPLASTIC	coord: 1..394

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012177.1	Sed0012177.1	mRNA
Sed0012177.2	Sed0012177.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006284	base-excision repair
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0008725	DNA-3-methyladenine glycosylase activity
molecular_function	GO:0016757	glycosyltransferase activity