Sed0012152 (gene) Chayote v1

Overview


Name	Sed0012152
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ATP-dependent helicase/nuclease subunit A isoform 1
Location	LG08: 2069207 .. 2070011 (-)
RNA-Seq Expression	Sed0012152
Synteny	Sed0012152

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTGGTAAATTTGTACAGAAAAATTGAGAAGGAAAAGGAGCTGAGAGATCGGGAAAATGATCGGAAACTCTCGTACATGGGCTTACGTTCGGATCATCACCGGCACCGTCGCCGGCGGCGTTCTCGGCTTCTACGTAATGCACCGCGTCGAACTCAGCTATAAGGTTAGCCCAATCTCGTAGATGTAAAGAAAAATTTGAAAGTTATGTATGGATTTGCTTCGAATCTCTTCTTCTCTTTGCGATTTCGTTTGATTTGTTCCTGCCTTTTGTGGCCGATGCAGGAGAAGGTGAACGAGAGGTTAAAACAGTACGAAATCGAACTGAAGAAGAAGGAGCAAATGAAGGAACTCGAAGATTCTCTATAGTTGTGAGTGCCCTAAAATTTTCACTTCAATTATAAATTGTTGGCTGAAACACTCAATTGAAGCGTTCCAAAAAGCAGATGAATTAGGGCACTAGAGTTTAGAACTGGATTTGGCAATAAAGTAGCGTAGGCTTAAAAAAGAGAGAAGAGAATTGGGTTGCTGTTTTGGTTTCTCATTTCTAAATTTTGATTCTCTGCTTGTGTTTTTGTTGTGTGATTGAATTTGATTCATGATTGGTTTCTTTAGACTCCCAATGTAAACTTAAGTTGATCAATTCAAGCCCTTTTAAGTGCTGGGTTCTGTCTTTTGTGCTTATACATGATTTTGTGCATTGACTTGAACTCCAATAGTGGAAGGAAATCCACTAGGTAGGCAATGGAATGATTAGATTCATTTGGTTTTAGTTATAGAAATTGGGTTGAGGTGGACTTACAAG

mRNA sequence

AAACTGGTAAATTTGTACAGAAAAATTGAGAAGGAAAAGGAGCTGAGAGATCGGGAAAATGATCGGAAACTCTCGTACATGGGCTTACGTTCGGATCATCACCGGCACCGTCGCCGGCGGCGTTCTCGGCTTCTACGTAATGCACCGCGTCGAACTCAGCTATAAGGAGAAGGTGAACGAGAGGTTAAAACAGTACGAAATCGAACTGAAGAAGAAGGAGCAAATGAAGGAACTCGAAGATTCTCTATAGTTGTGAGTGCCCTAAAATTTTCACTTCAATTATAAATTGTTGGCTGAAACACTCAATTGAAGCGTTCCAAAAAGCAGATGAATTAGGGCACTAGAGTTTAGAACTGGATTTGGCAATAAAGTAGCGTAGGCTTAAAAAAGAGAGAAGAGAATTGGGTTGCTGTTTTGGTTTCTCATTTCTAAATTTTGATTCTCTGCTTGTGTTTTTGTTGTGTGATTGAATTTGATTCATGATTGGTTTCTTTAGACTCCCAATGTAAACTTAAGTTGATCAATTCAAGCCCTTTTAAGTGCTGGGTTCTGTCTTTTGTGCTTATACATGATTTTGTGCATTGACTTGAACTCCAATAGTGGAAGGAAATCCACTAGGTAGGCAATGGAATGATTAGATTCATTTGGTTTTAGTTATAGAAATTGGGTTGAGGTGGACTTACAAG

Coding sequence (CDS)

ATGATCGGAAACTCTCGTACATGGGCTTACGTTCGGATCATCACCGGCACCGTCGCCGGCGGCGTTCTCGGCTTCTACGTAATGCACCGCGTCGAACTCAGCTATAAGGAGAAGGTGAACGAGAGGTTAAAACAGTACGAAATCGAACTGAAGAAGAAGGAGCAAATGAAGGAACTCGAAGATTCTCTATAG

Protein sequence

MIGNSRTWAYVRIITGTVAGGVLGFYVMHRVELSYKEKVNERLKQYEIELKKKEQMKELEDSL

Homology

[Close]

BLAST of Sed0012152 vs. NCBI nr
Match: KAG7021603.1 (hypothetical protein SDJN02_15329 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.3 bits (264), Expect = 9.8e-20
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 1  MIGNSRTWAYVRIITGTVAGGVLGFYVMHRVELSYKEKVNERLKQYEIELKKKEQMKELE 60
          MIGNSR WAY+RIITGT+ GGVLGFYVMHRVELSYKEK+ ERLKQYE ELKKKEQ+KE+E
Sbjct: 1  MIGNSRKWAYIRIITGTIVGGVLGFYVMHRVELSYKEKMKERLKQYENELKKKEQIKEVE 60

Query: 61 DSL 64
          DS+
Sbjct: 61 DSV 63

[Close]

BLAST of Sed0012152 vs. NCBI nr
Match: XP_004138234.1 (uncharacterized protein LOC101217575 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MIGNSRTWAYVRIITGTVAGGVLGFYVMHRVELSYKEKVNERLKQYEIELKKKEQMKELE 60
          M+G+SR WAY+RIITGTV GGVLGFYVMHRVE+ YKEK+ ERLKQYE ELKKKEQMKELE
Sbjct: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of Sed0012152 vs. NCBI nr
Match: KGN63809.2 (hypothetical protein Csa_013239 [Cucumis sativus])

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MIGNSRTWAYVRIITGTVAGGVLGFYVMHRVELSYKEKVNERLKQYEIELKKKEQMKELE 60
          M+G+SR WAY+RIITGTV GGVLGFYVMHRVE+ YKEK+ ERLKQYE ELKKKEQMKELE
Sbjct: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of Sed0012152 vs. NCBI nr
Match: XP_022134690.1 (uncharacterized protein LOC111006898 [Momordica charantia] >XP_022134691.1 uncharacterized protein LOC111006898 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MIGNSRTWAYVRIITGTVAGGVLGFYVMHRVELSYKEKVNERLKQYEIELKKKEQMKELE 60
          M+GN R WAYVRIITGT+ GGVLGFYVMHRVE+ YKEKV ERL+QYE ELKKKEQMKELE
Sbjct: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of Sed0012152 vs. NCBI nr
Match: XP_022987318.1 (uncharacterized protein LOC111484905 [Cucurbita maxima])

HSP 1 Score: 104.0 bits (258), Expect = 4.9e-19
Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MIGNSRTWAYVRIITGTVAGGVLGFYVMHRVELSYKEKVNERLKQYEIELKKKEQMKELE 60
           M+G+SRTWAY+RII GT+ GGVLGFYVMHRVE+ YKEK+ ERL+QYEIELKKKEQMKELE
Sbjct: 45  MMGSSRTWAYMRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLRQYEIELKKKEQMKELE 104

Query: 61  DS 63
           DS
Sbjct: 105 DS 106

[Close]

BLAST of Sed0012152 vs. ExPASy TrEMBL
Match: A0A6J1BYI4 (uncharacterized protein LOC111006898 OS=Momordica charantia OX=3673 GN=LOC111006898 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 1  MIGNSRTWAYVRIITGTVAGGVLGFYVMHRVELSYKEKVNERLKQYEIELKKKEQMKELE 60
          M+GN R WAYVRIITGT+ GGVLGFYVMHRVE+ YKEKV ERL+QYE ELKKKEQMKELE
Sbjct: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of Sed0012152 vs. ExPASy TrEMBL
Match: A0A6J1JJ44 (uncharacterized protein LOC111484905 OS=Cucurbita maxima OX=3661 GN=LOC111484905 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-19
Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MIGNSRTWAYVRIITGTVAGGVLGFYVMHRVELSYKEKVNERLKQYEIELKKKEQMKELE 60
           M+G+SRTWAY+RII GT+ GGVLGFYVMHRVE+ YKEK+ ERL+QYEIELKKKEQMKELE
Sbjct: 45  MMGSSRTWAYMRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLRQYEIELKKKEQMKELE 104

Query: 61  DS 63
           DS
Sbjct: 105 DS 106

[Close]

BLAST of Sed0012152 vs. ExPASy TrEMBL
Match: A0A6J1E2A1 (uncharacterized protein LOC111430128 OS=Cucurbita moschata OX=3662 GN=LOC111430128 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.9e-19
Identity = 50/62 (80.65%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MIGNSRTWAYVRIITGTVAGGVLGFYVMHRVELSYKEKVNERLKQYEIELKKKEQMKELE 60
          M+G+SR+WAY+RII GT+ GGVLGFYVMHRVE+ YKEK+ ERL+QYEIELKKKEQMKELE
Sbjct: 1  MMGSSRSWAYMRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLRQYEIELKKKEQMKELE 60

Query: 61 DS 63
          DS
Sbjct: 61 DS 62

[Close]

BLAST of Sed0012152 vs. ExPASy TrEMBL
Match: A0A1S3BW37 (uncharacterized protein LOC103494113 OS=Cucumis melo OX=3656 GN=LOC103494113 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MIGNSRTWAYVRIITGTVAGGVLGFYVMHRVELSYKEKVNERLKQYEIELKKKEQMKELE 60
          M+G+SR WAY RII GT+ GGVLGFYVMHRVE+ YKEK+ ERLKQYE ELKKKE+MKELE
Sbjct: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 90

Query: 61 DSL 64
          DSL
Sbjct: 91 DSL 93

[Close]

BLAST of Sed0012152 vs. ExPASy TrEMBL
Match: A0A5A7USD3 (ATP-dependent helicase/nuclease subunit A isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00320 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-18
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MIGNSRTWAYVRIITGTVAGGVLGFYVMHRVELSYKEKVNERLKQYEIELKKKEQMKELE 60
          M+G+SR WAY RII GT+ GGVLGFYVMHRVE+ YKEK+ ERLKQYE ELKKKE+MKELE
Sbjct: 1  MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of Sed0012152 vs. TAIR 10
Match: AT3G18510.1 (unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-11
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 4  NSRTWAYVRIITGTVAGGVLGFYVMHRVELSYKEKVNERLKQYEIELKKKEQMKEL 60
          +S TW Y RII GT+ GG LGFYVMHR+E+SYK ++ E L QYE +++K+++ + L
Sbjct: 4  SSMTWGYARIIAGTLLGGALGFYVMHRIEVSYKMRMEEALNQYEKDMQKRQEEENL 59

The following BLAST results are available for this feature:

BLAST of Sed0012152 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021603.1	9.8e-20	84.13	hypothetical protein SDJN02_15329 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_004138234.1	1.7e-19	84.13	uncharacterized protein LOC101217575 [Cucumis sativus]	[more]
KGN63809.2	1.7e-19	84.13	hypothetical protein Csa_013239 [Cucumis sativus]	[more]
XP_022134690.1	2.2e-19	84.13	uncharacterized protein LOC111006898 [Momordica charantia] >XP_022134691.1 uncha...	[more]
XP_022987318.1	4.9e-19	82.26	uncharacterized protein LOC111484905 [Cucurbita maxima]	[more]

BLAST of Sed0012152 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0012152 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYI4	1.1e-19	84.13	uncharacterized protein LOC111006898 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1JJ44	2.4e-19	82.26	uncharacterized protein LOC111484905 OS=Cucurbita maxima OX=3661 GN=LOC111484905...	[more]
A0A6J1E2A1	6.9e-19	80.65	uncharacterized protein LOC111430128 OS=Cucurbita moschata OX=3662 GN=LOC1114301...	[more]
A0A1S3BW37	2.6e-18	79.37	uncharacterized protein LOC103494113 OS=Cucumis melo OX=3656 GN=LOC103494113 PE=...	[more]
A0A5A7USD3	2.6e-18	79.37	ATP-dependent helicase/nuclease subunit A isoform 1 OS=Cucumis melo var. makuwa ...	[more]

BLAST of Sed0012152 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18510.1	1.4e-11	53.57	unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012152.1	Sed0012152.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004386	helicase activity