Sed0012127 (gene) Chayote v1

Overview


Name	Sed0012127
Type	gene
Organism	Sechium edule (Chayote v1)
Description	RNA exonuclease 4
Location	LG04: 37532892 .. 37535787 (+)
RNA-Seq Expression	Sed0012127
Synteny	Sed0012127

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAAGAACCCTAAACCCAAACAGCTAAACCCCAATTGGGCGCTGCTCCAACAGGTACTGTTCTTTCTTTCTTTCTTCTTCTTCTTCTTTCCATCATTCTCTTATTTCTTCATGTTTTGATCCTGCAGAAGTTGAAGCCCCATGGCCGCCATGCTTCAATCCACGCCTCTTCCCACAATTCCGTTCTAGGTAACACTTCTTCTACTTTTCCCTATTCAAGATTATAAGACTCATAGCAAGATGGGTTTACAGGAAAACGCAAGCAAAGCCCTGATGTGGACTCGAATCATTCCCTGAAGAAGAAACTTCTCATTCCTGCAAACGATGACTTTAGGTGCTCTTTTGGAACTTCTTTTTATCTTTGAATGGAATTTTATTATAAATCTTTATTCAATTCTGACTATCATCAACACCAAGTTAAATTTAATTATACATTATTAATTACTACTGGTTTTTATAATTTTAAGATTTTAGTTCAATTCTTAAACATTCCAACAACATTTTTTTTTTTAAAACTAAAAAAGAATCAACTTTTTTACTCCAAATCACGATTTTTTATCAAAAGAACTCTCATTCCATTCCATCACTCGGGGGTTAAAAATCTGAAGAAACATCTAGAATAACATACTTGGGTTGGGTTTGTTTGGAAGTTTAGCTTAAATGACTCTACCAACTAACTTCAAACTGTCTCTTGGCAGTCTGACAGATGTAGTCGCTATGGATTGCGAAATGGTTGGCGTGGATCAAGGTAACAAAAGTGCCCTTGGACGAGTCACTCTGGTATTCATTCATTCATACATTCATTTTCTATGTTGTTCGTATCCATGTATTGGGTTTTTAAGTACGTAGCTTGTCTTGTTTAGGTGATCAGTTGCTAATAACACGGCTACTGATTCATGGCATGGCAGGTAAACAAATGGGGAAATGTTATATACGACGAGTTTGTGCGACCTATGGAGCGTATTGTTGACTTTCGGACTCACGTTAGTGGCATAAGACCCAGCGACCTCAAGAAGGGTGATTATAGTTTTTCCTTTTTCTTTTTCTAAATAGGTATACCTTGTTGTTTACATGTATATATAAAAAAATGAAATTTAAGGAAGAGATTGGAGTCATCTGTTTCATTGAAGAGTTCTAAGGAGTAACTATGTTGAAGATTCTAGCTCTGTACAATTATCTCTGTGAGAACAGTAATGCTTTAATTTAATGTACTTAGTGGGAAGTGAAAATTTAAGTATTTAGATTAATGAAAAGTAAATTTTGGTATCGTCCTTAGTCCCTTTCTTTCAACAAGATAGTCCGGTATTTGGGTCCCTTACGTCCAGTCAGTCGTTCATCCTCTCAGTTCCAATTGGAATTAAGTTCTCTAACTTACTCTAGAAGTGCCATTGACATAGTTTATATATTGTCATTAATTTCAGCAAAGGATTTTCCAACAGTCCAGAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGTCTAATGATCTTAAGGTATTTGGAGTAACATAATTCACCTTCAGAGTTTACTCCATTTTATATTTTCAAAATAATTTACAGTTTTAAGCATTAACCCAGCAATTATAGTAAGGTTCTTTTTTGACAGGCATTGCTCTTAAGTCATCCCAAGAAGGATGTAAGAGACACCTCCGAGTATTCATTCTACCAGAAGTAATAATAATTCCACATCCCATTCTACTTTAATAACTTATGGCCTTTCCGCTTCTACTTTGAAATTTATCCATTCTCAATTGTTTGGTGAAACAGGGAAGGATGTAAAAGAGCTCTCCGCCATCTTGCAGCCGATTTTCTTGGTGTTGAGATCCAGAATGGGGAACACTGTCCGGTTAGTTCTCTGATCTTTTTGTCCTTTCAAATTTAACTCTTCTTGTTGAACTGCGGTTAGATTTTGGGTATTGGTTATAACTAATGACTTGAAGTTCCAACTCTAAATCTTACTTAATTTGGTTAAATTACAAGTTTAGTTATTTCTCTTTCAATTTCTTGTAATCACCTTCAGGTGTTCATTGTTCTCTCCTTCATTTCATTCATCAATGAAAGATTTTAAACTTTCAATTTTGTGTTTAGTGATTTGTGAAGTATAAAATAGTCAAAGACTTATTAGACACTTGTTAAAGTTGAAAACTTTTTAGACACCAAATTAAAAGTTAAAAGGTACCCACCTACCTATTAAACACCTTTTAAAATTAATTGATCTATTATACAAAAAAAAATAAAAATTAATGGACTAAAATAGACAAATTTGAAAGATGGCTAAACATGCAACTTACAACTTACAACTTACAAGGGTAGTTACAATACAACTTACAAATTTAACCTGCCTGCCACCAATATTTTATGGTAGTTACAATACAACTTAGAAGGGTCCTACTTTACCACCATGTCACACATGTATGTATATAGATATCAATTTTTTTAATAGGAAATGAAAACTTTCTTGATTCGATGAAAAGTTACAAAAAACACATAATTTGTTACAAAAATCCTTTCCAATGCGATAAAAGAGTAAGACAATAATCTTTGAAAGGTAGTAAGACATATAGATATCAATTTAGGCTTCCTCTATTACTATACATAGATGTCAATTCAGGCCTTTTCTATTATTACCCTTGCTAGCAAAAACTGTTCTCCATTCATACCGGATCGAACTTCTTGATATACATTGTAGGAAGGGCGAAAGACTCATGAAATGTTGGCTGAACTTTGCAGGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTTAAATCTGAAATGAAGCTCAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGTGGTTTTTAA

mRNA sequence

ATGGAGAAGAAGAACCCTAAACCCAAACAGCTAAACCCCAATTGGGCGCTGCTCCAACAGAAGTTGAAGCCCCATGGCCGCCATGCTTCAATCCACGCCTCTTCCCACAATTCCGTTCTAGGAAAACGCAAGCAAAGCCCTGATGTGGACTCGAATCATTCCCTGAAGAAGAAACTTCTCATTCCTGCAAACGATGACTTTAGTCTGACAGATGTAGTCGCTATGGATTGCGAAATGGTTGGCGTGGATCAAGGTAACAAAAGTGCCCTTGGACGAGTCACTCTGGTAAACAAATGGGGAAATGTTATATACGACGAGTTTGTGCGACCTATGGAGCGTATTGTTGACTTTCGGACTCACGTTAGTGGCATAAGACCCAGCGACCTCAAGAAGGCAAAGGATTTTCCAACAGTCCAGAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGTCTAATGATCTTAAGGCATTGCTCTTAAGTCATCCCAAGAAGGATGTAAGAGACACCTCCGAGTATTCATTCTACCAGAAGGAAGGATGTAAAAGAGCTCTCCGCCATCTTGCAGCCGATTTTCTTGGTGTTGAGATCCAGAATGGGGAACACTGTCCGGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTTAAATCTGAAATGAAGCTCAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGTGGTTTTTAA

Coding sequence (CDS)

ATGGAGAAGAAGAACCCTAAACCCAAACAGCTAAACCCCAATTGGGCGCTGCTCCAACAGAAGTTGAAGCCCCATGGCCGCCATGCTTCAATCCACGCCTCTTCCCACAATTCCGTTCTAGGAAAACGCAAGCAAAGCCCTGATGTGGACTCGAATCATTCCCTGAAGAAGAAACTTCTCATTCCTGCAAACGATGACTTTAGTCTGACAGATGTAGTCGCTATGGATTGCGAAATGGTTGGCGTGGATCAAGGTAACAAAAGTGCCCTTGGACGAGTCACTCTGGTAAACAAATGGGGAAATGTTATATACGACGAGTTTGTGCGACCTATGGAGCGTATTGTTGACTTTCGGACTCACGTTAGTGGCATAAGACCCAGCGACCTCAAGAAGGCAAAGGATTTTCCAACAGTCCAGAAGAGAGTGGCAGAGTTGATTAAAGGAAAGATTCTTGTTGGCCATGCCTTGTCTAATGATCTTAAGGCATTGCTCTTAAGTCATCCCAAGAAGGATGTAAGAGACACCTCCGAGTATTCATTCTACCAGAAGGAAGGATGTAAAAGAGCTCTCCGCCATCTTGCAGCCGATTTTCTTGGTGTTGAGATCCAGAATGGGGAACACTGTCCGGTAGAAGATGCTCGTTCTGCAATGCTGCTCTATCAGAAGAAAAGAAAAGAGTGGGAAAAGAGTGTTAAATCTGAAATGAAGCTCAAATTGAAGCAGAAGAAACGCAAGCCAAGGAAGAAATCCAAGGATGGAGGTGGTTTTTAA

Protein sequence

MEKKNPKPKQLNPNWALLQQKLKPHGRHASIHASSHNSVLGKRKQSPDVDSNHSLKKKLLIPANDDFSLTDVVAMDCEMVGVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFRTHVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTSEYSFYQKEGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMKLKLKQKKRKPRKKSKDGGGF

Homology

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BLAST of Sed0012127 vs. NCBI nr
Match: XP_008463709.1 (PREDICTED: RNA exonuclease 4 [Cucumis melo] >ADN33800.1 RNA exonuclease [Cucumis melo subsp. melo])

HSP 1 Score: 423.3 bits (1087), Expect = 1.5e-114
Identity = 217/260 (83.46%), Postives = 234/260 (90.00%), Query Frame = 0


Query: 3   KKNPKPKQLNPNWALLQQKLKPHGRHASIHA------SSHNSVLGKRKQSPDVDSNHSLK 62
           KKNPKPK LNPNWA+LQQKLKPHG + S  +      +S  ++LGKRK+  DV+SNHS +
Sbjct: 6   KKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVESNHS-Q 65

Query: 63  KKLLIPANDDFSLTDVVAMDCEMVGVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVD 122
           K +LIP NDDFSLTD VAMDCEMVGV QGNKSALGRVTLVNKWGNVIYDEFVRP+ER+VD
Sbjct: 66  KNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVD 125

Query: 123 FRTHVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTS 182
           FRT +SGIRP DLKKAKDFPTVQKRVAELIKGKILVGHAL NDLKALLLSHPK DVRDTS
Sbjct: 126 FRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDVRDTS 185

Query: 183 EYSFYQKEGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMK 242
           EY F+QKEGCKRALRHLAA+FLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVK+E K
Sbjct: 186 EYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQK 245

Query: 243 LKLKQKKRKPRKKSKDGGGF 257
           LKLKQKKRKPRKKSKDGGGF
Sbjct: 246 LKLKQKKRKPRKKSKDGGGF 264

[Close]

BLAST of Sed0012127 vs. NCBI nr
Match: XP_004146040.1 (RNA exonuclease 4 [Cucumis sativus])

HSP 1 Score: 420.6 bits (1080), Expect = 9.5e-114
Identity = 216/258 (83.72%), Postives = 231/258 (89.53%), Query Frame = 0


Query: 3   KKNPKPKQLNPNWALLQQKLKPHGRHAS----IHASSHNSVLGKRKQSPDVDSNHSLKKK 62
           KKNPKPK LNPNWALLQQKL PHG + S       +S  ++LGKRK+  DV+SNHS +K 
Sbjct: 6   KKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHS-QKN 65

Query: 63  LLIPANDDFSLTDVVAMDCEMVGVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFR 122
           +LIP NDDFSLTD VAMDCEMVGV QGNKSALGRVTLVNKWGNVIYDEFVRP+ER+VDFR
Sbjct: 66  ILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFR 125

Query: 123 THVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTSEY 182
           T +SGIRP DLKKAKDFPTVQKRVAELIKGK+LVGHAL NDLKALLLSHPK DVRDTSEY
Sbjct: 126 TQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEY 185

Query: 183 SFYQKEGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMKLK 242
            F+QKEGCKRALRHLAA+FL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK+E KLK
Sbjct: 186 QFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLK 245

Query: 243 LKQKKRKPRKKSKDGGGF 257
           LKQKKRKPRKKSKDGGGF
Sbjct: 246 LKQKKRKPRKKSKDGGGF 262

[Close]

BLAST of Sed0012127 vs. NCBI nr
Match: KAE8649831.1 (hypothetical protein Csa_012901 [Cucumis sativus])

HSP 1 Score: 415.6 bits (1067), Expect = 3.1e-112
Identity = 214/256 (83.59%), Postives = 229/256 (89.45%), Query Frame = 0


Query: 3   KKNPKPKQLNPNWALLQQKLKPHGRHAS----IHASSHNSVLGKRKQSPDVDSNHSLKKK 62
           KKNPKPK LNPNWALLQQKL PHG + S       +S  ++LGKRK+  DV+SNHS +K 
Sbjct: 6   KKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHS-QKN 65

Query: 63  LLIPANDDFSLTDVVAMDCEMVGVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFR 122
           +LIP NDDFSLTD VAMDCEMVGV QGNKSALGRVTLVNKWGNVIYDEFVRP+ER+VDFR
Sbjct: 66  ILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFR 125

Query: 123 THVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTSEY 182
           T +SGIRP DLKKAKDFPTVQKRVAELIKGK+LVGHAL NDLKALLLSHPK DVRDTSEY
Sbjct: 126 TQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEY 185

Query: 183 SFYQKEGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMKLK 242
            F+QKEGCKRALRHLAA+FL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK+E KLK
Sbjct: 186 QFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLK 245

Query: 243 LKQKKRKPRKKSKDGG 255
           LKQKKRKPRKKSKDGG
Sbjct: 246 LKQKKRKPRKKSKDGG 260

[Close]

BLAST of Sed0012127 vs. NCBI nr
Match: XP_038897122.1 (RNA exonuclease 4 isoform X3 [Benincasa hispida])

HSP 1 Score: 414.5 bits (1064), Expect = 6.8e-112
Identity = 216/260 (83.08%), Postives = 233/260 (89.62%), Query Frame = 0


Query: 3   KKNPKPKQLNPNWALLQQKLKP----HGRHASIHAS--SHNSVLGKRKQSPDVDSNHSLK 62
           KK  KPK LNPNWALLQQKLKP    H R +++  S  S  ++LGKRK+  DV+SNHS +
Sbjct: 6   KKTSKPKLLNPNWALLQQKLKPLGSNHSRSSTVPKSEASSKTLLGKRKERSDVESNHS-Q 65

Query: 63  KKLLIPANDDFSLTDVVAMDCEMVGVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVD 122
           K +LIP NDDFSLTDVVAMDCEMVGV QGNKSALGRVTLVNKWGNVIYDEFVRP+ER+VD
Sbjct: 66  KNILIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVD 125

Query: 123 FRTHVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTS 182
           FRT +SGIRPSDLKKAKDF TVQKRVAELIKGKILVGHAL NDLKALLLSHPK+DVRDTS
Sbjct: 126 FRTQISGIRPSDLKKAKDFSTVQKRVAELIKGKILVGHALRNDLKALLLSHPKQDVRDTS 185

Query: 183 EYSFYQKEGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMK 242
           EY F+QKEGC+RALRHLAA+FLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK E+K
Sbjct: 186 EYQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKGEIK 245

Query: 243 LKLKQKKRKPRKKSKDGGGF 257
           LKLKQKKRK RKKSKDGGGF
Sbjct: 246 LKLKQKKRKRRKKSKDGGGF 264

[Close]

BLAST of Sed0012127 vs. NCBI nr
Match: XP_022139347.1 (RNA exonuclease 4 [Momordica charantia])

HSP 1 Score: 411.4 bits (1056), Expect = 5.8e-111
Identity = 211/259 (81.47%), Postives = 232/259 (89.58%), Query Frame = 0


Query: 3   KKNPKPKQLNPNWALLQQKLKPHG----RHASI-HASSHNSVLGKRKQSPDVDSNHSLKK 62
           K +PKPKQ+NPNWALLQQKLK H     R +++    + NSVLGKRK+  DVDS  S  K
Sbjct: 8   KNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRS-DK 67

Query: 63  KLLIPANDDFSLTDVVAMDCEMVGVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDF 122
            LLIP NDDFS+TDVVAMDCEMVGV QGN+SALGRVTLVNKWGNVIYDEFVRP+ER+VDF
Sbjct: 68  NLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDF 127

Query: 123 RTHVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTSE 182
           RT +SGIRP DLKKAKDFPTVQK+VA+LIKGKI+VGHAL ND KALLLSHPKKD+RDTSE
Sbjct: 128 RTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSE 187

Query: 183 YSFYQKEGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMKL 242
           Y F+QKEGC+RALRHLAA+FLGVEIQNGEHCP+EDARSAMLLYQKKRKEWEKS+KSEMKL
Sbjct: 188 YQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKL 247

Query: 243 KLKQKKRKPRKKSKDGGGF 257
           KLKQKKRKPRKKSKDGGGF
Sbjct: 248 KLKQKKRKPRKKSKDGGGF 265

[Close]

BLAST of Sed0012127 vs. ExPASy Swiss-Prot
Match: Q91560 (RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-42
Identity = 96/209 (45.93%), Postives = 139/209 (66.51%), Query Frame = 0


Query: 45  QSPDVDSNHSLKKKLLIPANDDFSLTDVVAMDCEMVGVD-QGNKSALGRVTLVNKWGNVI 104
           +SP VD       K+L+       LT  VAMDCEMVGV   G +S L RV++VN +G  +
Sbjct: 214 RSPTVD-------KILVKERAFEGLTRTVAMDCEMVGVGMDGEESILARVSIVNLFGKCV 273

Query: 105 YDEFVRPMERIVDFRTHVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKAL 164
           YD++V+P ER+ D+RT VSGIRP D+KK + F  VQK V+E+++G+ LVGHA+ NDLK L
Sbjct: 274 YDKYVKPTERVTDYRTAVSGIRPEDVKKGEPFKVVQKEVSEILRGRTLVGHAVHNDLKIL 333

Query: 165 LLSHPKKDVRDTSEYS-FYQK-EGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQ 224
            L HPKK +RDT +Y  F QK +  + +L+ L    L V++Q GEHC V+DA++AM LY 
Sbjct: 334 FLDHPKKAIRDTQKYKPFKQKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYT 393

Query: 225 KKRKEWEKSVKSEMK--LKLKQKKRKPRK 249
            ++K WE ++K++    + + +K + P+K
Sbjct: 394 MEKKSWEVAIKAKYTGVMPVDRKSKGPQK 415

[Close]

BLAST of Sed0012127 vs. ExPASy Swiss-Prot
Match: Q9GZR2 (RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2)

HSP 1 Score: 172.2 bits (435), Expect = 7.7e-42
Identity = 83/172 (48.26%), Postives = 120/172 (69.77%), Query Frame = 0


Query: 69  LTDVVAMDCEMVGV-DQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFRTHVSGIRPS 128
           LT  +A+DCEMVGV  +G +S   RV++VN++G  +YD++V+P E + D+RT VSGIRP 
Sbjct: 240 LTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 299

Query: 129 DLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTSEYSFY--QKEG 188
           +LK+ ++   VQK VAE++KG+ILVGHAL NDLK L L HPKK +RDT +Y  +  Q + 
Sbjct: 300 NLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKYKPFKSQVKS 359

Query: 189 CKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMKL 238
            + +LR L+   LG+++Q  EHC ++DA++AM LY   +KEWE   +    L
Sbjct: 360 GRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKKEWESMARDRRPL 411

[Close]

BLAST of Sed0012127 vs. ExPASy Swiss-Prot
Match: Q6PAQ4 (RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2)

HSP 1 Score: 171.0 bits (432), Expect = 1.7e-41
Identity = 79/165 (47.88%), Postives = 119/165 (72.12%), Query Frame = 0


Query: 69  LTDVVAMDCEMVGV-DQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFRTHVSGIRPS 128
           LT  +A+DCEMVGV  +G +S   RV++VN++G  +YD++V+P E + D+RT VSGIRP 
Sbjct: 250 LTKALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPE 309

Query: 129 DLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTSEYSFYQK--EG 188
           +LK+ ++F  V+K VAE++KG+ILVGHAL NDLK L L HPKK +RDT ++  ++   + 
Sbjct: 310 NLKQGEEFEVVKKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKFKPFRSRVKS 369

Query: 189 CKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKS 231
            + +L+ L+   LG+ +Q  EHC ++DA++AM LY   ++EWE S
Sbjct: 370 GRPSLKRLSEKILGIRVQQAEHCSIQDAQAAMRLYVMVKREWESS 414

[Close]

BLAST of Sed0012127 vs. ExPASy Swiss-Prot
Match: Q6DEW6 (RNA exonuclease 4 OS=Xenopus tropicalis OX=8364 GN=rexo4 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.8e-41
Identity = 89/195 (45.64%), Postives = 130/195 (66.67%), Query Frame = 0


Query: 57  KKLLIPANDDFSLTDVVAMDCEMVGVD-QGNKSALGRVTLVNKWGNVIYDEFVRPMERIV 116
           +K+L+       LT  VAMDCEMVGV   G +S L RV++VN +G  +YD++VRP ER+ 
Sbjct: 213 EKVLVKEKAFEGLTRTVAMDCEMVGVGLDGEESMLARVSIVNLFGKCVYDKYVRPTERVT 272

Query: 117 DFRTHVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDT 176
           D+RT VSGIRP D+K  + F  VQ  VAE+++G+ LVGHA+ NDLK L L HPKK +RDT
Sbjct: 273 DYRTAVSGIRPDDIKNGEAFKDVQAEVAEILRGRTLVGHAVHNDLKILFLDHPKKAIRDT 332

Query: 177 SEYSFYQK--EGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKS 236
            +Y  +++  +  + +L+ L    L V++Q GEHC V+DA++AM LY  ++K WE ++K+
Sbjct: 333 QKYKPFKEKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLYTMEKKCWEAAIKA 392

Query: 237 EMKLKLKQKKRKPRK 249
           +       K + P+K
Sbjct: 393 KYAGVTAAKAKGPQK 407

[Close]

BLAST of Sed0012127 vs. ExPASy Swiss-Prot
Match: Q4WHF8 (RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=rex4 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.1e-40
Identity = 98/194 (50.52%), Postives = 131/194 (67.53%), Query Frame = 0


Query: 73  VAMDCEMVGV--DQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFRTHVSGIRPSDLK 132
           VAMDCEMVGV  +  N SAL RV++VN  G  +YD +VRP E I D+RTHVSGI P  + 
Sbjct: 117 VAMDCEMVGVGPNPDNDSALARVSIVNFNGEQVYDSYVRPKEMITDWRTHVSGISPKHMA 176

Query: 133 KAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTSEYSFYQK--EGCKR 192
           +A+    VQK VAE++ G+ILVGHA+SNDL ALLL HPK+D+RDTS++  Y+K   G   
Sbjct: 177 EARSLEQVQKDVAEILDGRILVGHAVSNDLDALLLGHPKRDIRDTSKHPPYRKIAGGGSP 236

Query: 193 ALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKR--------KEWEKSVKSEMK---- 250
            L+ LA++FLG+ IQ+G H  VEDA++ MLLY++ +        K+W   V  + K    
Sbjct: 237 RLKILASEFLGLNIQDGAHSSVEDAKATMLLYRRDKEAFEREHLKKWPIRVVVDKKENGE 296

[Close]

BLAST of Sed0012127 vs. ExPASy TrEMBL
Match: E5GBF8 (RNA exonuclease 4 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 7.1e-115
Identity = 217/260 (83.46%), Postives = 234/260 (90.00%), Query Frame = 0


Query: 3   KKNPKPKQLNPNWALLQQKLKPHGRHASIHA------SSHNSVLGKRKQSPDVDSNHSLK 62
           KKNPKPK LNPNWA+LQQKLKPHG + S  +      +S  ++LGKRK+  DV+SNHS +
Sbjct: 6   KKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVESNHS-Q 65

Query: 63  KKLLIPANDDFSLTDVVAMDCEMVGVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVD 122
           K +LIP NDDFSLTD VAMDCEMVGV QGNKSALGRVTLVNKWGNVIYDEFVRP+ER+VD
Sbjct: 66  KNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVD 125

Query: 123 FRTHVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTS 182
           FRT +SGIRP DLKKAKDFPTVQKRVAELIKGKILVGHAL NDLKALLLSHPK DVRDTS
Sbjct: 126 FRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDVRDTS 185

Query: 183 EYSFYQKEGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMK 242
           EY F+QKEGCKRALRHLAA+FLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVK+E K
Sbjct: 186 EYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQK 245

Query: 243 LKLKQKKRKPRKKSKDGGGF 257
           LKLKQKKRKPRKKSKDGGGF
Sbjct: 246 LKLKQKKRKPRKKSKDGGGF 264

[Close]

BLAST of Sed0012127 vs. ExPASy TrEMBL
Match: A0A1S3CJW0 (RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103501792 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 7.1e-115
Identity = 217/260 (83.46%), Postives = 234/260 (90.00%), Query Frame = 0


Query: 3   KKNPKPKQLNPNWALLQQKLKPHGRHASIHA------SSHNSVLGKRKQSPDVDSNHSLK 62
           KKNPKPK LNPNWA+LQQKLKPHG + S  +      +S  ++LGKRK+  DV+SNHS +
Sbjct: 6   KKNPKPKLLNPNWAILQQKLKPHGSNHSKASTVPKSEASSKTLLGKRKERSDVESNHS-Q 65

Query: 63  KKLLIPANDDFSLTDVVAMDCEMVGVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVD 122
           K +LIP NDDFSLTD VAMDCEMVGV QGNKSALGRVTLVNKWGNVIYDEFVRP+ER+VD
Sbjct: 66  KNILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVD 125

Query: 123 FRTHVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTS 182
           FRT +SGIRP DLKKAKDFPTVQKRVAELIKGKILVGHAL NDLKALLLSHPK DVRDTS
Sbjct: 126 FRTQISGIRPCDLKKAKDFPTVQKRVAELIKGKILVGHALRNDLKALLLSHPKNDVRDTS 185

Query: 183 EYSFYQKEGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMK 242
           EY F+QKEGCKRALRHLAA+FLGV+IQNGEHCPVEDARSAMLLYQKKRKEWEKSVK+E K
Sbjct: 186 EYQFFQKEGCKRALRHLAAEFLGVQIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQK 245

Query: 243 LKLKQKKRKPRKKSKDGGGF 257
           LKLKQKKRKPRKKSKDGGGF
Sbjct: 246 LKLKQKKRKPRKKSKDGGGF 264

[Close]

BLAST of Sed0012127 vs. ExPASy TrEMBL
Match: A0A0A0KZK3 (RNA exonuclease 4 OS=Cucumis sativus OX=3659 GN=Csa_4G628920 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.6e-114
Identity = 216/258 (83.72%), Postives = 231/258 (89.53%), Query Frame = 0


Query: 3   KKNPKPKQLNPNWALLQQKLKPHGRHAS----IHASSHNSVLGKRKQSPDVDSNHSLKKK 62
           KKNPKPK LNPNWALLQQKL PHG + S       +S  ++LGKRK+  DV+SNHS +K 
Sbjct: 6   KKNPKPKLLNPNWALLQQKLNPHGSNHSNTVLKSEASSKTLLGKRKERSDVESNHS-QKN 65

Query: 63  LLIPANDDFSLTDVVAMDCEMVGVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFR 122
           +LIP NDDFSLTD VAMDCEMVGV QGNKSALGRVTLVNKWGNVIYDEFVRP+ER+VDFR
Sbjct: 66  ILIPVNDDFSLTDEVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPIERVVDFR 125

Query: 123 THVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTSEY 182
           T +SGIRP DLKKAKDFPTVQKRVAELIKGK+LVGHAL NDLKALLLSHPK DVRDTSEY
Sbjct: 126 TQISGIRPCDLKKAKDFPTVQKRVAELIKGKLLVGHALRNDLKALLLSHPKNDVRDTSEY 185

Query: 183 SFYQKEGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMKLK 242
            F+QKEGCKRALRHLAA+FL VEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVK+E KLK
Sbjct: 186 QFFQKEGCKRALRHLAAEFLSVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKAEQKLK 245

Query: 243 LKQKKRKPRKKSKDGGGF 257
           LKQKKRKPRKKSKDGGGF
Sbjct: 246 LKQKKRKPRKKSKDGGGF 262

[Close]

BLAST of Sed0012127 vs. ExPASy TrEMBL
Match: A0A6J1CDP9 (RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111010297 PE=3 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.8e-111
Identity = 211/259 (81.47%), Postives = 232/259 (89.58%), Query Frame = 0


Query: 3   KKNPKPKQLNPNWALLQQKLKPHG----RHASI-HASSHNSVLGKRKQSPDVDSNHSLKK 62
           K +PKPKQ+NPNWALLQQKLK H     R +++    + NSVLGKRK+  DVDS  S  K
Sbjct: 8   KNSPKPKQMNPNWALLQQKLKSHASKHPRFSNVPKFDTSNSVLGKRKERSDVDSIRS-DK 67

Query: 63  KLLIPANDDFSLTDVVAMDCEMVGVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDF 122
            LLIP NDDFS+TDVVAMDCEMVGV QGN+SALGRVTLVNKWGNVIYDEFVRP+ER+VDF
Sbjct: 68  NLLIPVNDDFSVTDVVAMDCEMVGVGQGNRSALGRVTLVNKWGNVIYDEFVRPIERVVDF 127

Query: 123 RTHVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTSE 182
           RT +SGIRP DLKKAKDFPTVQK+VA+LIKGKI+VGHAL ND KALLLSHPKKD+RDTSE
Sbjct: 128 RTQISGIRPCDLKKAKDFPTVQKKVADLIKGKIVVGHALCNDFKALLLSHPKKDLRDTSE 187

Query: 183 YSFYQKEGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMKL 242
           Y F+QKEGC+RALRHLAA+FLGVEIQNGEHCP+EDARSAMLLYQKKRKEWEKS+KSEMKL
Sbjct: 188 YQFFQKEGCRRALRHLAAEFLGVEIQNGEHCPIEDARSAMLLYQKKRKEWEKSLKSEMKL 247

Query: 243 KLKQKKRKPRKKSKDGGGF 257
           KLKQKKRKPRKKSKDGGGF
Sbjct: 248 KLKQKKRKPRKKSKDGGGF 265

[Close]

BLAST of Sed0012127 vs. ExPASy TrEMBL
Match: A0A6J1FBB2 (RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111442550 PE=3 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 1.2e-109
Identity = 211/257 (82.10%), Postives = 230/257 (89.49%), Query Frame = 0


Query: 3   KKNPKPKQLNPNWALLQQKLKPHG--RHASIHAS--SHNSVLGKRKQSPDVDSNHSLKKK 62
           KK+ KPK LNPNWALLQQKL PHG  R +S+  S  S  ++LGKRK   D +S+HS  KK
Sbjct: 6   KKSAKPKLLNPNWALLQQKLNPHGSKRSSSVPKSEASSKTLLGKRKDRSDEESDHS-NKK 65

Query: 63  LLIPANDDFSLTDVVAMDCEMVGVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFR 122
           LLIP NDDFSLTDVVAMDCEMVGV QGNKSALGRVT+VNKWGNVIYDEFVRP+ER+VDFR
Sbjct: 66  LLIPVNDDFSLTDVVAMDCEMVGVGQGNKSALGRVTVVNKWGNVIYDEFVRPIERVVDFR 125

Query: 123 THVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTSEY 182
           T +SGIRP DL+KAKDFPTVQKRVAELIKG+ILVGHAL NDLKALLLSHPKKDVRDTSEY
Sbjct: 126 TEISGIRPCDLRKAKDFPTVQKRVAELIKGRILVGHALRNDLKALLLSHPKKDVRDTSEY 185

Query: 183 SFYQKEGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMKLK 242
            F+Q+ GC+RALRHLAA+ LGVEIQNGEHCPVEDARSAMLLYQKK KEWEKSVK+E+KLK
Sbjct: 186 QFFQRGGCRRALRHLAAEVLGVEIQNGEHCPVEDARSAMLLYQKKSKEWEKSVKAEVKLK 245

Query: 243 LKQKKRKPRKKSKDGGG 256
           LKQKKRKPRKKSKDGGG
Sbjct: 246 LKQKKRKPRKKSKDGGG 261

[Close]

BLAST of Sed0012127 vs. TAIR 10
Match: AT3G15080.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 325.1 bits (832), Expect = 5.1e-89
Identity = 169/255 (66.27%), Postives = 204/255 (80.00%), Query Frame = 0


Query: 2   EKKNPKPKQLNPNWALLQQKLK--PHGR-HASIHASSHNSVLGKRKQSPDVDSNHSLKKK 61
           +K  PKP QLNPNW+LLQQKLK   HG    S +  + +S+LGKRK+ PD + +   K  
Sbjct: 11  KKITPKPVQLNPNWSLLQQKLKSDSHGNTRKSSNPENPSSILGKRKERPDSEVDVP-KIN 70

Query: 62  LLIPANDDFSLTDVVAMDCEMVGVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFR 121
            L P NDD SLTD VAMDCEMVGV QG KSALGRVTLVNKWGNV+YDEFVRP+E +VDFR
Sbjct: 71  PLAPVNDDSSLTDEVAMDCEMVGVSQGTKSALGRVTLVNKWGNVLYDEFVRPVEHVVDFR 130

Query: 122 THVSGIRPSDLKKAKDFPTVQKRVAELIKGKILVGHALSNDLKALLLSHPKKDVRDTSEY 181
           T +SGIRP DL+KAKDF   Q +VAELIKGKILVGHAL NDLKALLL+HPKKD+RDT EY
Sbjct: 131 TSISGIRPRDLRKAKDFRVAQTKVAELIKGKILVGHALHNDLKALLLTHPKKDIRDTGEY 190

Query: 182 SFYQKEGCKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEKSVKSEMKLK 241
             + K   +++L+HLA++ LG +IQNGEHCP++DAR+AM+LYQK RKEWEK+VK + ++ 
Sbjct: 191 QPFLKGKTRKSLKHLASEILGADIQNGEHCPIDDARAAMMLYQKNRKEWEKTVKDQTRMW 250

Query: 242 LKQKKRKPRKKSKDG 254
           LKQKKRKP+KK+K G
Sbjct: 251 LKQKKRKPKKKAKYG 264

[Close]

BLAST of Sed0012127 vs. TAIR 10
Match: AT3G27970.1 (Exonuclease family protein )

HSP 1 Score: 93.2 bits (230), Expect = 3.2e-19
Identity = 55/174 (31.61%), Postives = 88/174 (50.57%), Query Frame = 0


Query: 72  VVAMDCEMV-GVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFRTHVSGIRPSDLK 131
           VVA+ C+MV G   G+     RV + ++  NVI+  +V+P   +  +R   +GIRP +L+
Sbjct: 135 VVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTSYRYETTGIRPENLR 194

Query: 132 KAKDFPTVQKRVAELI--------------KGKILVGHALSNDLKALLLSHPKKDVRDTS 191
            A     VQ+++ E +              K +ILVGH L +DL  L L +P   +RDT+
Sbjct: 195 DAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDRLQLEYPSSMIRDTA 254

Query: 192 EYSFYQKEG-CKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKEWEK 230
           +Y    K      +L++L   +LG ++  G   P ED  + M LY + R +  K
Sbjct: 255 KYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYTRMRYQKHK 308

[Close]

BLAST of Sed0012127 vs. TAIR 10
Match: AT5G40310.1 (Exonuclease family protein )

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-18
Identity = 54/169 (31.95%), Postives = 86/169 (50.89%), Query Frame = 0


Query: 72  VVAMDCEMV-GVDQGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFRTHVSGIRPSDLK 131
           VVA+ C+MV G   G+     RV + ++  NV++  +V+P   + ++R  ++GIRP +L+
Sbjct: 126 VVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIRPENLR 185

Query: 132 KAKDFPTVQKRVAELI--------------KGKILVGHALSNDLKALLLSHPKKDVRDTS 191
            A      Q++V E +              K +ILVGH L N L +L L +    +RDT+
Sbjct: 186 DAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMIRDTA 245

Query: 192 EYSFYQKEG-CKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKR 225
           EY    K      +L++L   +LG +I  G   P ED  + M LY + R
Sbjct: 246 EYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRMR 294

[Close]

BLAST of Sed0012127 vs. TAIR 10
Match: AT2G48100.1 (Exonuclease family protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.8e-18
Identity = 56/164 (34.15%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 73  VAMDCEMVGVD-QGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFRTHVSGIRPSDLKK 132
           +A+DCEMVG    G       V LV+   NVI+   V+P+  + D+R  ++G+   DLK 
Sbjct: 133 MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD 192

Query: 133 AKDFPTVQKRVAELIKG--------KILVGHALSNDLKALLLSHPKKDVRDTSEYSFYQK 192
                 V++RV   + G         +LVGH L +D+  L L +P   +RDT++Y    K
Sbjct: 193 GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMK 252

Query: 193 EG-CKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKE 227
                ++L++L   +LG +IQ G+H   ED  SAM LY++ R +
Sbjct: 253 TNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQ 296

[Close]

BLAST of Sed0012127 vs. TAIR 10
Match: AT2G48100.2 (Exonuclease family protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.8e-18
Identity = 56/164 (34.15%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 73  VAMDCEMVGVD-QGNKSALGRVTLVNKWGNVIYDEFVRPMERIVDFRTHVSGIRPSDLKK 132
           +A+DCEMVG    G       V LV+   NVI+   V+P+  + D+R  ++G+   DLK 
Sbjct: 133 MALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRHEITGLTKEDLKD 192

Query: 133 AKDFPTVQKRVAELIKG--------KILVGHALSNDLKALLLSHPKKDVRDTSEYSFYQK 192
                 V++RV   + G         +LVGH L +D+  L L +P   +RDT++Y    K
Sbjct: 193 GMPLEHVRERVFSFLCGGQNDGAGRLLLVGHDLRHDMSCLKLEYPSHLLRDTAKYVPLMK 252

Query: 193 EG-CKRALRHLAADFLGVEIQNGEHCPVEDARSAMLLYQKKRKE 227
                ++L++L   +LG +IQ G+H   ED  SAM LY++ R +
Sbjct: 253 TNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRMRDQ 296

The following BLAST results are available for this feature:

BLAST of Sed0012127 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463709.1	1.5e-114	83.46	PREDICTED: RNA exonuclease 4 [Cucumis melo] >ADN33800.1 RNA exonuclease [Cucumis...	[more]
XP_004146040.1	9.5e-114	83.72	RNA exonuclease 4 [Cucumis sativus]	[more]
KAE8649831.1	3.1e-112	83.59	hypothetical protein Csa_012901 [Cucumis sativus]	[more]
XP_038897122.1	6.8e-112	83.08	RNA exonuclease 4 isoform X3 [Benincasa hispida]	[more]
XP_022139347.1	5.8e-111	81.47	RNA exonuclease 4 [Momordica charantia]	[more]

BLAST of Sed0012127 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91560	1.6e-42	45.93	RNA exonuclease 4 OS=Xenopus laevis OX=8355 GN=rexo4 PE=2 SV=2	[more]
Q9GZR2	7.7e-42	48.26	RNA exonuclease 4 OS=Homo sapiens OX=9606 GN=REXO4 PE=1 SV=2	[more]
Q6PAQ4	1.7e-41	47.88	RNA exonuclease 4 OS=Mus musculus OX=10090 GN=Rexo4 PE=2 SV=2	[more]
Q6DEW6	3.8e-41	45.64	RNA exonuclease 4 OS=Xenopus tropicalis OX=8364 GN=rexo4 PE=2 SV=1	[more]
Q4WHF8	1.1e-40	50.52	RNA exonuclease 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 10...	[more]

BLAST of Sed0012127 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GBF8	7.1e-115	83.46	RNA exonuclease 4 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A1S3CJW0	7.1e-115	83.46	RNA exonuclease 4 OS=Cucumis melo OX=3656 GN=LOC103501792 PE=3 SV=1	[more]
A0A0A0KZK3	4.6e-114	83.72	RNA exonuclease 4 OS=Cucumis sativus OX=3659 GN=Csa_4G628920 PE=3 SV=1	[more]
A0A6J1CDP9	2.8e-111	81.47	RNA exonuclease 4 OS=Momordica charantia OX=3673 GN=LOC111010297 PE=3 SV=1	[more]
A0A6J1FBB2	1.2e-109	82.10	RNA exonuclease 4 OS=Cucurbita moschata OX=3662 GN=LOC111442550 PE=3 SV=1	[more]

BLAST of Sed0012127 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15080.1	5.1e-89	66.27	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G27970.1	3.2e-19	31.61	Exonuclease family protein	[more]
AT5G40310.1	1.6e-18	31.95	Exonuclease family protein	[more]
AT2G48100.1	2.8e-18	34.15	Exonuclease family protein	[more]
AT2G48100.2	2.8e-18	34.15	Exonuclease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 71..229 e-value: 2.9E-39 score: 146.4
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 73..220 e-value: 6.2E-15 score: 56.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 68..247 e-value: 6.3E-58 score: 197.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..256
None	No IPR available	PANTHER	PTHR12801	RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED	coord: 30..247
None	No IPR available	PANTHER	PTHR12801:SF135	RNA EXONUCLEASE 4	coord: 30..247
IPR037431	RNA exonuclease 4, DEDDh 3'-5' exonuclease domain	CDD	cd06144	REX4_like	coord: 73..221 e-value: 6.5269E-90 score: 260.911
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 72..227

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012127.1	Sed0012127.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity