Sed0012094 (gene) Chayote v1

Overview


Name	Sed0012094
Type	gene
Organism	Sechium edule (Chayote v1)
Description	GRAS domain-containing protein
Location	LG09: 3830446 .. 3832975 (+)
RNA-Seq Expression	Sed0012094
Synteny	Sed0012094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAATCCTCCTTCCTCCCTCAATCAAAATTGCTAAACACAACCTCCTTTTCTCCATAAGAAAGCATGGACATAACTTTTTTCACAGCCAAAGATCAAGTCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCTTCATCATCATCATCTTCAATTCTCCAATATAGACATGCAAAGCTCCACGAGCCAATCGTCCGAGCACTCACCCGAGCACTCTTCGTCCGCCGCCGCCTCCGCCGCAAGCTCCGGGAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAGGGCAATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCCTCCCCTTATGGCGACTCCGACCAGAAAATGGCTTCATATTTCTTGCAAGCTCTCTTTTGTAGGGCCACTGAGACTGGCCTTAGTTGCTACAAGACCCTCGTTTCGGTCGCCGAGAAAAATCACTCCTTCGACTCAGCTTTGAGGTTGATCCTCAAGTTTCAAGAGGTACGGATTAAAATCATCGTTCAACTCAAAAACTTATTTTGATGTTTTAGTCGTATTTTAAACTCTCTTCTCGCTTTCTAGTACCAAGTAAACCTAGTGATTATCCATACATAAGAGTAGCTTGAATTAATTAGTACTAATTCAAAAGTTTGAGTTATTAGGTTAATGTAAATTTATTATTTCAATCATACTTTCAGCCTTCCTCCTCACTTTATGTGCTGGGAAATTGGCACAAATCTCAACTAGTGATTACAATGTCAATTTAGATCATGAAATGTTGATCACAAGAGTTTAAATACAAGATCTCCCATTAAATTAAATCATTAGTATTTTTTTATTAAAATATTGTTTTGATTATCCTTTGCTGGACTTTCAAATATCCAATTTTGGTCTTTTAATTATTATTTTTTTCTCAAATATAATTATAAAAAATGTTGATTTTTCTTCAAAACAAAATTACCCTTTCTTCTATGAATTTTAAAAATAGATTCATATTTTATTATTTCTTGTATTAAAGTTATTATTTCATTCCATCAATTTTGATTAGTATTAACTTTAAATTTATCATAGAGATCAATTTTAAATTATTTTAAGCATAGACTAAAATTTGACATATGAAAGATTATAGACCGAAATGAAAGAATTCCCAAAATACATAGAACAAAAGAGTATGATAACTTTTTTTCTTAAAAAATAACACAAGAACGATTAAAGGGACTTAAATCTTCAATTTATAAGAATCAAGACTTTAAGCTGATAGGTTACAGTAAATTTTTTTTTCAGGCAAGTCCATGGACGACATTCGGGCATGTAGGGGCGAACGGTGCGATTCTTGAGGCCCTCGAGGGAGAATCGAAGCTTCACATAATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACACCACATCTCAAGCTCACGGTTGTATCAACAACAAGCATAGTGAAGTCTCTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCATTCGAGTTCAATCCCATAACAAATCTAAATCGCTTAACCGATCTCACAAATGAAGCCCTAAAAGTGGAAGAAGATGAAGCCATTGCCATAAATTGCATTGGAGCTTTAAGAAGAGTGAGAGTTGAAGAGAGAAACAATGTAATTTCAATGTTGAAGTCATTAAAGCCTAGGGTTTTAACAATTGTTGAGGAAGAAGCTGATTTTATTAGCCCTAAAAATGATTTCTTGAACTGCTTTGAAGAGTGTCTTAGATTTTACACTCTTTACTTTGAGATGTTGGAGGAGAGCTTTGTGGCAACAAGTAATGAGAGATTGATTTTGGAAAGGGAGTGTTCAAGGAATATTGTGAGGCTTTTGGGGTGTGATAATGAAAATGATGAAGAAATCATAGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGAGCAAAAGGCTAAAAGATGCAACTTTTTCATTAGCTGGATTTAGTGATGATGTTATGGATGATGTTAAGGCTCTGCTCAAGCGGTACAAACCCGGTTGGGCGTTGTTGCACCGTGCTACCACCACCACGACTGCCACTGAGACCGACGACGTCATCGAAGTAGACGAAGTTGGTGGTGGTGATTCAAGTGGAATTTACTTGACATGGAAGGAAGAGCCAGTGGTGTGGGTTTCAGCATGGAAACCCTAAAGGAACAAATTATAGTCTTGAAATTTTTAGTACTACTCTCTCTATATTCATAAAGGGGTATTGTTAAATATATATGTGTAGATTTTTGTATTCAATTTTTTATATTGTTCTTCATTTGATCTTGGTGGTAGTTTTTTTGTTGTGTTTTTGTTGTTGTTGCCTTTATTATTTTTTTTTTTTCTTATTCTATGGAGTTTGTGGATTTTTCCTGCCCTCCATTATTATTTTTACCCTGTTCTCTTCAAAATCTTCTTTAGAAGCAAACACATTCCAAATTTGGATGGGCTTTCCTTA

mRNA sequence

AAAAGAATCCTCCTTCCTCCCTCAATCAAAATTGCTAAACACAACCTCCTTTTCTCCATAAGAAAGCATGGACATAACTTTTTTCACAGCCAAAGATCAAGTCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCTTCATCATCATCATCTTCAATTCTCCAATATAGACATGCAAAGCTCCACGAGCCAATCGTCCGAGCACTCACCCGAGCACTCTTCGTCCGCCGCCGCCTCCGCCGCAAGCTCCGGGAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAGGGCAATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCCTCCCCTTATGGCGACTCCGACCAGAAAATGGCTTCATATTTCTTGCAAGCTCTCTTTTGTAGGGCCACTGAGACTGGCCTTAGTTGCTACAAGACCCTCGTTTCGGTCGCCGAGAAAAATCACTCCTTCGACTCAGCTTTGAGGTTGATCCTCAAGTTTCAAGAGGCAAGTCCATGGACGACATTCGGGCATGTAGGGGCGAACGGTGCGATTCTTGAGGCCCTCGAGGGAGAATCGAAGCTTCACATAATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACACCACATCTCAAGCTCACGGTTGTATCAACAACAAGCATAGTGAAGTCTCTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCATTCGAGTTCAATCCCATAACAAATCTAAATCGCTTAACCGATCTCACAAATGAAGCCCTAAAAGTGGAAGAAGATGAAGCCATTGCCATAAATTGCATTGGAGCTTTAAGAAGAGTGAGAGTTGAAGAGAGAAACAATGTAATTTCAATGTTGAAGTCATTAAAGCCTAGGGTTTTAACAATTGTTGAGGAAGAAGCTGATTTTATTAGCCCTAAAAATGATTTCTTGAACTGCTTTGAAGAGTGTCTTAGATTTTACACTCTTTACTTTGAGATGTTGGAGGAGAGCTTTGTGGCAACAAGTAATGAGAGATTGATTTTGGAAAGGGAGTGTTCAAGGAATATTGTGAGGCTTTTGGGGTGTGATAATGAAAATGATGAAGAAATCATAGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGAGCAAAAGGCTAAAAGATGCAACTTTTTCATTAGCTGGATTTAGTGATGATGTTATGGATGATGTTAAGGCTCTGCTCAAGCGGTACAAACCCGGTTGGGCGTTGTTGCACCGTGCTACCACCACCACGACTGCCACTGAGACCGACGACGTCATCGAAGTAGACGAAGTTGGTGGTGGTGATTCAAGTGGAATTTACTTGACATGGAAGGAAGAGCCAGTGGTGTGGGTTTCAGCATGGAAACCCTAAAGGAACAAATTATAGTCTTGAAATTTTTAGTACTACTCTCTCTATATTCATAAAGGGGTATTGTTAAATATATATGTGTAGATTTTTGTATTCAATTTTTTATATTGTTCTTCATTTGATCTTGGTGGTAGTTTTTTTGTTGTGTTTTTGTTGTTGTTGCCTTTATTATTTTTTTTTTTTCTTATTCTATGGAGTTTGTGGATTTTTCCTGCCCTCCATTATTATTTTTACCCTGTTCTCTTCAAAATCTTCTTTAGAAGCAAACACATTCCAAATTTGGATGGGCTTTCCTTA

Coding sequence (CDS)

ATGGACATAACTTTTTTCACAGCCAAAGATCAAGTCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCTTCATCATCATCATCTTCAATTCTCCAATATAGACATGCAAAGCTCCACGAGCCAATCGTCCGAGCACTCACCCGAGCACTCTTCGTCCGCCGCCGCCTCCGCCGCAAGCTCCGGGAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAGGGCAATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCCTCCCCTTATGGCGACTCCGACCAGAAAATGGCTTCATATTTCTTGCAAGCTCTCTTTTGTAGGGCCACTGAGACTGGCCTTAGTTGCTACAAGACCCTCGTTTCGGTCGCCGAGAAAAATCACTCCTTCGACTCAGCTTTGAGGTTGATCCTCAAGTTTCAAGAGGCAAGTCCATGGACGACATTCGGGCATGTAGGGGCGAACGGTGCGATTCTTGAGGCCCTCGAGGGAGAATCGAAGCTTCACATAATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACACCACATCTCAAGCTCACGGTTGTATCAACAACAAGCATAGTGAAGTCTCTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCATTCGAGTTCAATCCCATAACAAATCTAAATCGCTTAACCGATCTCACAAATGAAGCCCTAAAAGTGGAAGAAGATGAAGCCATTGCCATAAATTGCATTGGAGCTTTAAGAAGAGTGAGAGTTGAAGAGAGAAACAATGTAATTTCAATGTTGAAGTCATTAAAGCCTAGGGTTTTAACAATTGTTGAGGAAGAAGCTGATTTTATTAGCCCTAAAAATGATTTCTTGAACTGCTTTGAAGAGTGTCTTAGATTTTACACTCTTTACTTTGAGATGTTGGAGGAGAGCTTTGTGGCAACAAGTAATGAGAGATTGATTTTGGAAAGGGAGTGTTCAAGGAATATTGTGAGGCTTTTGGGGTGTGATAATGAAAATGATGAAGAAATCATAGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGAGCAAAAGGCTAAAAGATGCAACTTTTTCATTAGCTGGATTTAGTGATGATGTTATGGATGATGTTAAGGCTCTGCTCAAGCGGTACAAACCCGGTTGGGCGTTGTTGCACCGTGCTACCACCACCACGACTGCCACTGAGACCGACGACGTCATCGAAGTAGACGAAGTTGGTGGTGGTGATTCAAGTGGAATTTACTTGACATGGAAGGAAGAGCCAGTGGTGTGGGTTTCAGCATGGAAACCCTAA

Protein sequence

MDITFFTAKDQVPTSFFNQSHDHLHHHHLQFSNIDMQSSTSQSSEHSPEHSSSAAASAASSGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGESKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVSTTSIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNRLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIVRLLGCDNENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALLHRATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP

Homology

[Close]

BLAST of Sed0012094 vs. NCBI nr
Match: XP_038906992.1 (protein SHORT-ROOT-like [Benincasa hispida])

HSP 1 Score: 781.2 bits (2016), Expect = 5.0e-222
Identity = 404/462 (87.45%), Postives = 425/462 (91.99%), Query Frame = 0


Query: 1   MDITFFTAKDQVPTSFFNQSHDHLHHHHLQFSNIDMQSSTSQSSEHSPEHSSSAAASAAS 60
           MDITFFTAK + PTSFFNQSHDH H HHL FSN+DMQSSTS SSE+SPEHS SAAA+AA+
Sbjct: 1   MDITFFTAK-EAPTSFFNQSHDH-HLHHLHFSNLDMQSSTSHSSEYSPEHSPSAAATAAA 60

Query: 61  SGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATET 120
           +GKWASTLLKECA+AISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATET
Sbjct: 61  TGKWASTLLKECAKAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATET 120

Query: 121 GLSCYKTLVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGESKLHIID 180
           GL+CYKTLV+VAEKNH+FDSALRLILKFQEASPWTTFGHV +NGAILEALEGE+KLHIID
Sbjct: 121 GLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIID 180

Query: 181 ISNTLCTQWPTLLESLATRNDDTPHLKLTVVSTTSIVKSLMKEIGQRMEKFARLMGVPFE 240
           ISNTLCTQWPTLLESLATRNDDTPHLKLTVV+TTSIVK LMKEIGQRMEKFARLMGVPFE
Sbjct: 181 ISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPFE 240

Query: 241 FNPITNLNRLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIV 300
           FNPITNLN LTDLTNEALKVEE EAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIV
Sbjct: 241 FNPITNLNHLTDLTNEALKVEEGEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIV 300

Query: 301 EEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIVRLLGCD 360
           EEEADFIS KNDFL CFEECLRFYTLYFEMLEESFVATSNERL+LERECSR+IVRLLGCD
Sbjct: 301 EEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCD 360

Query: 361 NEN-DEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALLHRAT 420
           ++   EE +GSERREKGKQW+KRLK A FS A FS+DVMDDVKALLKRYKPGWALL R+T
Sbjct: 361 HDQISEEEMGSERREKGKQWTKRLKQALFSSADFSEDVMDDVKALLKRYKPGWALL-RST 420

Query: 421 TTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
              T  E       DE GG DSSGIYLTWKEE VVWVSAWKP
Sbjct: 421 AAVTGDE-------DESGGDDSSGIYLTWKEESVVWVSAWKP 452

[Close]

BLAST of Sed0012094 vs. NCBI nr
Match: XP_004153213.1 (protein SHORT-ROOT [Cucumis sativus] >KGN46310.1 hypothetical protein Csa_005353 [Cucumis sativus])

HSP 1 Score: 775.0 bits (2000), Expect = 3.6e-220
Identity = 401/468 (85.68%), Postives = 425/468 (90.81%), Query Frame = 0


Query: 1   MDITFFTAKDQVPTSFFNQSHDHLHH---HHLQFSNIDMQSSTSQSSEHSPEHSSSAAAS 60
           MDITFFTAK + PTSFFNQSHDH HH   HHL FSN+DMQSSTS SSE+SPEHS SAAA+
Sbjct: 1   MDITFFTAK-EAPTSFFNQSHDHRHHHQLHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAA 60

Query: 61  AA---SSGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALF 120
           AA   ++GKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMA YFLQALF
Sbjct: 61  AATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAFYFLQALF 120

Query: 121 CRATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGES 180
           CRATETGL+CYKTLV+VAEKNH+FDSALRLILKFQEASPWTTFGHV +NGAILEALEGE+
Sbjct: 121 CRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGET 180

Query: 181 KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVSTTSIVKSLMKEIGQRMEKFARL 240
           KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVV+TTSIVK LMKEIGQRMEKFARL
Sbjct: 181 KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARL 240

Query: 241 MGVPFEFNPITNLNRLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLKP 300
           MGVPFEFNPITN++ LTDLTNEALKVEE EAIAINCIGALRRV+VEERNNVISMLKSLKP
Sbjct: 241 MGVPFEFNPITNIDHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKSLKP 300

Query: 301 RVLTIVEEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIV 360
           RVLTIVEEEADFIS KNDFL CFEECLRFYTLYFEMLEESFVATSNERL+LERECSR+IV
Sbjct: 301 RVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIV 360

Query: 361 RLLGCDNEN-DEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWA 420
           RLLGCD++   EE IGSERREKGKQW+KRLK A FS A FS+DVMDDVKALLKRYKPGWA
Sbjct: 361 RLLGCDHDQISEEEIGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGWA 420

Query: 421 LLHRATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
           LL  AT          V + +E G G+SSGIYLTWKEEPVVWVSAWKP
Sbjct: 421 LLRPATAA--------VRDEEENGDGESSGIYLTWKEEPVVWVSAWKP 459

[Close]

BLAST of Sed0012094 vs. NCBI nr
Match: XP_023548769.1 (protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 766.1 bits (1977), Expect = 1.7e-217
Identity = 393/468 (83.97%), Postives = 428/468 (91.45%), Query Frame = 0


Query: 1   MDITFFTAKDQVPTSFFNQSHDHLHHHHLQFSNIDMQSSTSQSSEHSPEHSSSAAASA-- 60
           MDITFFTAK + PT+FFNQSHD  HHHHL FSN+DMQSSTS SSE+SPE S SAAA+A  
Sbjct: 1   MDITFFTAK-EAPTTFFNQSHD--HHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAA 60

Query: 61  ---ASSGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120
              A++GKW+STLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC
Sbjct: 61  TTLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120

Query: 121 RATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGESK 180
           +ATETGL+CYKTLV++A+KNHSFD++L+LILKFQEASPWTTFGHV +NGAILEALEGE+K
Sbjct: 121 KATETGLTCYKTLVAIADKNHSFDTSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVSTTSIVKSLMKEIGQRMEKFARLM 240
           LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVV+TT+IVKSLMKEIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLNRLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLKPR 300
           GVPF+FNPITNL  LTDLT EALKVEEDEAIAINCIGALRRVR+EERNNVISMLKSLKPR
Sbjct: 241 GVPFDFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVISMLKSLKPR 300

Query: 301 VLTIVEEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIVR 360
           VLTIVEEEADFIS KN+FL CFEECLRFYTLYF+MLE+SFV TSNERL+LERECSR+IVR
Sbjct: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLVLERECSRSIVR 360

Query: 361 LLGCDNENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALL 420
           LLGCD    EE +GSERREKGKQWSKRLK++ FSLA FS+DV+DDVKALLKRYKPGWALL
Sbjct: 361 LLGCD--ESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALL 420

Query: 421 HRA--TTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
            RA  TTTTTA  T +V E D+    DS G+YLTWKEEPVVWVSAWKP
Sbjct: 421 RRATITTTTTAAATGEVHERDD----DSCGVYLTWKEEPVVWVSAWKP 459

[Close]

BLAST of Sed0012094 vs. NCBI nr
Match: XP_022992254.1 (protein SHORT-ROOT-like [Cucurbita maxima])

HSP 1 Score: 765.4 bits (1975), Expect = 2.8e-217
Identity = 393/466 (84.33%), Postives = 426/466 (91.42%), Query Frame = 0


Query: 1   MDITFFTAKDQVPTSFFNQSHDHLHHHHLQFSNIDMQSSTSQSSEHSPEHSSSAAASA-- 60
           MDITFFTAK + PT+FFNQSHD  HHHHL FSN+DMQSSTS SSE+SPE S SAAA+A  
Sbjct: 1   MDITFFTAK-EAPTTFFNQSHD--HHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAA 60

Query: 61  ---ASSGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120
              A++GKW+STLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC
Sbjct: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120

Query: 121 RATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGESK 180
           +ATETGL+CYKTLV++A+KNHSFDS+L+LILKFQEASPWTTFGHV +NGAILEALEGE+K
Sbjct: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVSTTSIVKSLMKEIGQRMEKFARLM 240
           LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVV+TT+IVKSLMKEIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLNRLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLKPR 300
           GVPFEFNPITNL  LTDLT EALKVEEDEAIAINCIGALRRVR+EERNNVISMLKSLKPR
Sbjct: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVISMLKSLKPR 300

Query: 301 VLTIVEEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIVR 360
           VLTIVEEEADFIS KN+FL CFEECLRFYTLYF+MLE+SFV TSNERL+LERECSR+IVR
Sbjct: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLVLERECSRSIVR 360

Query: 361 LLGCDNENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALL 420
           LLGCD    EE +GSERREKGKQWSKRLK++ FSLA FS+DV+DDVKALLKRYKPGWALL
Sbjct: 361 LLGCD--ESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALL 420

Query: 421 HRATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
            RA TT TA  T +V E D+    DS G+YLTWKEEPVVWVSAWKP
Sbjct: 421 RRAATTATA--TGEVHERDD----DSCGVYLTWKEEPVVWVSAWKP 455

[Close]

BLAST of Sed0012094 vs. NCBI nr
Match: XP_008460030.1 (PREDICTED: protein SHORT-ROOT-like [Cucumis melo])

HSP 1 Score: 764.6 bits (1973), Expect = 4.8e-217
Identity = 396/469 (84.43%), Postives = 419/469 (89.34%), Query Frame = 0


Query: 1   MDITFFTAKDQVPTSFFNQSHDHL----HHHHLQFSNIDMQSSTSQSSEHSPEHSSSAAA 60
           MDITFFT K + PTSFFNQSHDH     HHHHL FSN+DMQSSTS SSE+SPEHS SAAA
Sbjct: 1   MDITFFTPK-EAPTSFFNQSHDHRHHHHHHHHLHFSNLDMQSSTSHSSEYSPEHSPSAAA 60

Query: 61  SAA---SSGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQAL 120
           +AA   ++GKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQAL
Sbjct: 61  AAATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQAL 120

Query: 121 FCRATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGE 180
           FCRATETGL+CYKTLV+VAEKNH+FDSALRLILKFQEASPWTTFGHV +NGAILEALEGE
Sbjct: 121 FCRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGE 180

Query: 181 SKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVSTTSIVKSLMKEIGQRMEKFAR 240
           +KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVV+TTSIVK LMKEIGQRMEKFAR
Sbjct: 181 TKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFAR 240

Query: 241 LMGVPFEFNPITNLNRLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLK 300
           LMGVPFEFNPITN+N LTDLTNEALKVEE EAIAINCIGALRRV+VEERNNVISMLK LK
Sbjct: 241 LMGVPFEFNPITNINHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKLLK 300

Query: 301 PRVLTIVEEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNI 360
           PRVLTIVEEEADFIS  NDFL CFEECLRFYTLYFEMLEESF ATSNERL+LERECSR+I
Sbjct: 301 PRVLTIVEEEADFISSTNDFLKCFEECLRFYTLYFEMLEESFGATSNERLVLERECSRSI 360

Query: 361 VRLLGCDNEN-DEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGW 420
           VRLLGCD++   EE +GSERREKGKQW+KRLK A FS A FS+DVMDDVKALLKRYKPGW
Sbjct: 361 VRLLGCDHDQISEEEMGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGW 420

Query: 421 ALLHRATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
           ALL  AT      E       +E G  + SGIYLTWKEEPVVWVSAWKP
Sbjct: 421 ALLRPATAAVGVDE-------EENGDAEPSGIYLTWKEEPVVWVSAWKP 461

[Close]

BLAST of Sed0012094 vs. ExPASy Swiss-Prot
Match: Q9SZF7 (Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 1.3e-108
Identity = 222/500 (44.40%), Postives = 317/500 (63.40%), Query Frame = 0


Query: 5   FFTAKDQVPTSFFNQSHDHLHHHHLQFSNIDMQSSTSQSSEHSPEHSSSAAASA---ASS 64
           FF  ++ + +S  + +H + ++ +  +S     +    ++  +P  +++AAA A   +SS
Sbjct: 57  FFMDEEDLSSSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSS 116

Query: 65  G-----------------------KWASTLLKECARAISEKDSNKIHHFLWMLNELASPY 124
           G                       KWA ++L E ARA S+KD+ +    LW LNEL+SPY
Sbjct: 117 GHHNDPSAFSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPY 176

Query: 125 GDSDQKMASYFLQALFCRATETGLSCYKTLVSVA--EKNHSFDSALRLILKFQEASPWTT 184
           GD++QK+ASYFLQALF R T +G  CY+T+V+ A  EK  SF+S  + +LKFQE SPW T
Sbjct: 177 GDTEQKLASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWAT 236

Query: 185 FGHVGANGAILEALEGESKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTV------ 244
           FGHV ANGAILEA++GE+K+HI+DIS+T CTQWPTLLE+LATR+DDTPHL+LT       
Sbjct: 237 FGHVAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANK 296

Query: 245 -VSTTSIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNRLTDLTNEALKVEEDEAIAIN 304
            V+  +    +MKEIG RMEKFARLMGVPF+FN I ++  L++     L V+ DE +AIN
Sbjct: 297 FVNDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAIN 356

Query: 305 CIGALRRV--RVEERNNVISMLKSLKPRVLTIVEEEADFISPK-----NDFLNCFEECLR 364
           C+GA+  +  R   R+ VIS  + L+PR++T+VEEEAD +  +     ++FL  F ECLR
Sbjct: 357 CVGAMHGIASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLR 416

Query: 365 FYTLYFEMLEESFVATSNERLILERECSRNIVRLLGCDNENDEEIIGSERREKGKQWSKR 424
           ++ + FE  EESF  TSNERL+LER   R IV L+ C+  +      +ERRE  ++WS+R
Sbjct: 417 WFRVCFESWEESFPRTSNERLMLERAAGRAIVDLVACEPSD-----STERRETARKWSRR 476

Query: 425 LKDATFSLAGFSDDVMDDVKALLKRYKPG-WALLHRATTTTTATETDDVIEVDEVGGGDS 462
           ++++ F   G+SD+V DDV+ALL+RYK G W++                     V   D+
Sbjct: 477 MRNSGFGAVGYSDEVADDVRALLRRYKEGVWSM---------------------VQCPDA 530

[Close]

BLAST of Sed0012094 vs. ExPASy Swiss-Prot
Match: A2XIA8 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 1.4e-105
Identity = 218/466 (46.78%), Postives = 288/466 (61.80%), Query Frame = 0


Query: 33  NIDMQSSTSQSSEHSPEHSSSAAASAASSGKWASTLLKECARAISEKDSNKIHHFLWMLN 92
           +I +    S +   S    + A A+ +SSG+WA+ LL ECARA++ +DS ++   +WMLN
Sbjct: 156 DISLDFGGSPAVPSSSGAGAGAGAAPSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLN 215

Query: 93  ELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEAS 152
           ELASPYGD DQK+ASYFLQ LF R T +G    +TL + +++N SFDS  R  LKFQE S
Sbjct: 216 ELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLATASDRNASFDSTRRTALKFQELS 275

Query: 153 PWTTFGHVGANGAILEA-LEG------------------ESKLHIIDISNTLCTQWPTLL 212
           PWT FGHV ANGAILE+ LE                    ++LHI+D+SNT CTQWPTLL
Sbjct: 276 PWTPFGHVAANGAILESFLEAAAAGAAAASSSSSSSSTPPTRLHILDLSNTFCTQWPTLL 335

Query: 213 ESLATR-NDDTPHLKLTVVSTT----SIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLN 272
           E+LATR +DDTPHL +T V  T    +  + +M+EIGQR+EKFARLMGVPF F  + +  
Sbjct: 336 EALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAG 395

Query: 273 RLTDLTNEALKVEE---DEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEAD 332
            L DL   AL + E     A+A+NC+ ALR V    R+  ++ L+ L+PRV+T+VEEEAD
Sbjct: 396 DLADLDLAALDLREGGATAALAVNCVNALRGV-ARGRDAFVASLRRLEPRVVTVVEEEAD 455

Query: 333 FISPKND----------FLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIVR 392
             +P+ D          F+  F E LRF++ Y + LEESF  TSNERL LER   R IV 
Sbjct: 456 LAAPEADASSEADTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVD 515

Query: 393 LLGCDNENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALL 452
           L+ C          +ERRE    W++R++ A FS A FS+DV DDV++LL+RYK GW++ 
Sbjct: 516 LVSCPASQ-----SAERRETAASWARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSMR 575

Query: 453 HRATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
                T            D+  G  ++G +L WKE+PVVW SAWKP
Sbjct: 576 DAGGAT------------DDAAGAAAAGAFLAWKEQPVVWASAWKP 603

[Close]

BLAST of Sed0012094 vs. ExPASy Swiss-Prot
Match: Q75I13 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 1.8e-105
Identity = 218/466 (46.78%), Postives = 288/466 (61.80%), Query Frame = 0


Query: 33  NIDMQSSTSQSSEHSPEHSSSAAASAASSGKWASTLLKECARAISEKDSNKIHHFLWMLN 92
           +I +    S +   S    + A A+ +SSG+WA+ LL ECARA++ +DS ++   +WMLN
Sbjct: 156 DISLDFGGSPAVPSSSGAGAGAGAAPSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLN 215

Query: 93  ELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEAS 152
           ELASPYGD DQK+ASYFLQ LF R T +G    +TL + +++N SFDS  R  LKFQE S
Sbjct: 216 ELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLATASDRNASFDSTRRTALKFQELS 275

Query: 153 PWTTFGHVGANGAILEA-LEG------------------ESKLHIIDISNTLCTQWPTLL 212
           PWT FGHV ANGAILE+ LE                    ++LHI+D+SNT CTQWPTLL
Sbjct: 276 PWTPFGHVAANGAILESFLEAAAAGAAASSSSSSSSSTPPTRLHILDLSNTFCTQWPTLL 335

Query: 213 ESLATR-NDDTPHLKLTVVSTT----SIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLN 272
           E+LATR +DDTPHL +T V  T    +  + +M+EIGQR+EKFARLMGVPF F  + +  
Sbjct: 336 EALATRSSDDTPHLSITTVVPTAAPSAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSG 395

Query: 273 RLTDLTNEALKVEE---DEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEAD 332
            L DL   AL + E     A+A+NC+ ALR V    R+  ++ L+ L+PRV+T+VEEEAD
Sbjct: 396 DLADLDLAALDLREGGATAALAVNCVNALRGV-ARGRDAFVASLRRLEPRVVTVVEEEAD 455

Query: 333 FISPKND----------FLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIVR 392
             +P+ D          F+  F E LRF++ Y + LEESF  TSNERL LER   R IV 
Sbjct: 456 LAAPEADASSEADTDAAFVKVFGEGLRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVD 515

Query: 393 LLGCDNENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALL 452
           L+ C          +ERRE    W++R++ A FS A FS+DV DDV++LL+RYK GW++ 
Sbjct: 516 LVSCPASQ-----SAERRETAASWARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSMR 575

Query: 453 HRATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
                T            D+  G  ++G +L WKE+PVVW SAWKP
Sbjct: 576 DAGGAT------------DDAAGAAAAGAFLAWKEQPVVWASAWKP 603

[Close]

BLAST of Sed0012094 vs. ExPASy Swiss-Prot
Match: A2YN56 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 3.2e-102
Identity = 209/464 (45.04%), Postives = 281/464 (60.56%), Query Frame = 0


Query: 33  NIDMQSSTSQSSEHSPEHSSSAAASAASSGKWASTLLKECARAISEKDSNKIHHFLWMLN 92
           N+D  S  S S   +   +SS A      G+WAS LL ECAR+++ +DS ++   +WMLN
Sbjct: 163 NLDFSSPASSSGGGT---ASSGAVGGGGGGRWASQLLLECARSVAARDSQRVQQLMWMLN 222

Query: 93  ELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEAS 152
           ELASPYGD +QK+ASYFLQ LF R T +G    +TL + +++N SFDS  R  L+FQE S
Sbjct: 223 ELASPYGDVEQKLASYFLQGLFARLTASGQRTLRTLAAASDRNTSFDSTRRTALRFQELS 282

Query: 153 PWTTFGHVGANGAILE--------ALEGESKLHIIDISNTLCTQWPTLLESLATRN-DDT 212
           PW++FGHV ANGAILE        A     + HI+D+SNT CTQWPTLLE+LATR+ D+T
Sbjct: 283 PWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADET 342

Query: 213 PHLKLTVV------STTSIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNRLTDLTNEA 272
           PHL +T V      + T+ V+ +M+EIGQRMEKFARLMGVPF F  + +   L +L  +A
Sbjct: 343 PHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDA 402

Query: 273 LKVEE---DEAIAINCIGALRRV---RVEERNNVISMLKSLKPRVLTIVEEEADFISPKN 332
           L + E     A+A+NC+ +LR V   R   R+   + L+ L PRV+T+VEEEAD ++   
Sbjct: 403 LDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLVASDP 462

Query: 333 D--------------FLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIVRLL 392
           D              FL  F E LRF++ Y + LEESF  TSNERL LER   R IV L+
Sbjct: 463 DASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERGAGRAIVDLV 522

Query: 393 GCDNENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALLHR 452
            C           ERRE    W++R++ A FS   FS+DV DDV++LL+RY+ GW++   
Sbjct: 523 SCPASE-----SMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYREGWSMREA 582

Query: 453 ATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
            T  + A                 +G++L WKE+P+VW SAW+P
Sbjct: 583 GTDDSAA----------------GAGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of Sed0012094 vs. ExPASy Swiss-Prot
Match: Q8H2X8 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2)

HSP 1 Score: 373.2 bits (957), Expect = 4.1e-102
Identity = 209/464 (45.04%), Postives = 281/464 (60.56%), Query Frame = 0


Query: 33  NIDMQSSTSQSSEHSPEHSSSAAASAASSGKWASTLLKECARAISEKDSNKIHHFLWMLN 92
           N+D  S  S S   +   +SS A      G+WAS LL ECAR+++ +DS ++   +WMLN
Sbjct: 163 NLDFSSPASSSGGGT---ASSGAVGGGGGGRWASQLLLECARSVAARDSQRVQQLMWMLN 222

Query: 93  ELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEAS 152
           ELASPYGD +QK+ASYFLQ LF R T +G    +TL + +++N SFDS  R  L+FQE S
Sbjct: 223 ELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNTSFDSTRRTALRFQELS 282

Query: 153 PWTTFGHVGANGAILE--------ALEGESKLHIIDISNTLCTQWPTLLESLATRN-DDT 212
           PW++FGHV ANGAILE        A     + HI+D+SNT CTQWPTLLE+LATR+ D+T
Sbjct: 283 PWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADET 342

Query: 213 PHLKLTVV------STTSIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNRLTDLTNEA 272
           PHL +T V      + T+ V+ +M+EIGQRMEKFARLMGVPF F  + +   L +L  +A
Sbjct: 343 PHLSITTVVSAAPSAPTAAVQRVMREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDA 402

Query: 273 LKVEE---DEAIAINCIGALRRV---RVEERNNVISMLKSLKPRVLTIVEEEADFISPKN 332
           L + E     A+A+NC+ +LR V   R   R+   + L+ L PRV+T+VEEEAD ++   
Sbjct: 403 LDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVTVVEEEADLVASDP 462

Query: 333 D--------------FLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIVRLL 392
           D              FL  F E LRF++ Y + LEESF  TSNERL LER   R IV L+
Sbjct: 463 DASSATEEGGDTEAAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERGAGRAIVDLV 522

Query: 393 GCDNENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALLHR 452
            C           ERRE    W++R++ A FS   FS+DV DDV++LL+RY+ GW++   
Sbjct: 523 SCPASE-----SMERRETAASWARRMRSAGFSPVAFSEDVADDVRSLLRRYREGWSMREA 582

Query: 453 ATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
            T  + A                 +G++L WKE+P+VW SAW+P
Sbjct: 583 GTDDSAA----------------GAGVFLAWKEQPLVWASAWRP 602

[Close]

BLAST of Sed0012094 vs. ExPASy TrEMBL
Match: A0A0A0K966 (GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G081510 PE=3 SV=1)

HSP 1 Score: 775.0 bits (2000), Expect = 1.7e-220
Identity = 401/468 (85.68%), Postives = 425/468 (90.81%), Query Frame = 0


Query: 1   MDITFFTAKDQVPTSFFNQSHDHLHH---HHLQFSNIDMQSSTSQSSEHSPEHSSSAAAS 60
           MDITFFTAK + PTSFFNQSHDH HH   HHL FSN+DMQSSTS SSE+SPEHS SAAA+
Sbjct: 1   MDITFFTAK-EAPTSFFNQSHDHRHHHQLHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAA 60

Query: 61  AA---SSGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALF 120
           AA   ++GKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMA YFLQALF
Sbjct: 61  AATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAFYFLQALF 120

Query: 121 CRATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGES 180
           CRATETGL+CYKTLV+VAEKNH+FDSALRLILKFQEASPWTTFGHV +NGAILEALEGE+
Sbjct: 121 CRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGET 180

Query: 181 KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVSTTSIVKSLMKEIGQRMEKFARL 240
           KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVV+TTSIVK LMKEIGQRMEKFARL
Sbjct: 181 KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARL 240

Query: 241 MGVPFEFNPITNLNRLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLKP 300
           MGVPFEFNPITN++ LTDLTNEALKVEE EAIAINCIGALRRV+VEERNNVISMLKSLKP
Sbjct: 241 MGVPFEFNPITNIDHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKSLKP 300

Query: 301 RVLTIVEEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIV 360
           RVLTIVEEEADFIS KNDFL CFEECLRFYTLYFEMLEESFVATSNERL+LERECSR+IV
Sbjct: 301 RVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIV 360

Query: 361 RLLGCDNEN-DEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWA 420
           RLLGCD++   EE IGSERREKGKQW+KRLK A FS A FS+DVMDDVKALLKRYKPGWA
Sbjct: 361 RLLGCDHDQISEEEIGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGWA 420

Query: 421 LLHRATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
           LL  AT          V + +E G G+SSGIYLTWKEEPVVWVSAWKP
Sbjct: 421 LLRPATAA--------VRDEEENGDGESSGIYLTWKEEPVVWVSAWKP 459

[Close]

BLAST of Sed0012094 vs. ExPASy TrEMBL
Match: A0A6J1JX21 (protein SHORT-ROOT-like OS=Cucurbita maxima OX=3661 GN=LOC111488628 PE=3 SV=1)

HSP 1 Score: 765.4 bits (1975), Expect = 1.4e-217
Identity = 393/466 (84.33%), Postives = 426/466 (91.42%), Query Frame = 0


Query: 1   MDITFFTAKDQVPTSFFNQSHDHLHHHHLQFSNIDMQSSTSQSSEHSPEHSSSAAASA-- 60
           MDITFFTAK + PT+FFNQSHD  HHHHL FSN+DMQSSTS SSE+SPE S SAAA+A  
Sbjct: 1   MDITFFTAK-EAPTTFFNQSHD--HHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAA 60

Query: 61  ---ASSGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120
              A++GKW+STLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC
Sbjct: 61  ATLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC 120

Query: 121 RATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGESK 180
           +ATETGL+CYKTLV++A+KNHSFDS+L+LILKFQEASPWTTFGHV +NGAILEALEGE+K
Sbjct: 121 KATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETK 180

Query: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVSTTSIVKSLMKEIGQRMEKFARLM 240
           LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVV+TT+IVKSLMKEIGQRMEKFARLM
Sbjct: 181 LHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLM 240

Query: 241 GVPFEFNPITNLNRLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLKPR 300
           GVPFEFNPITNL  LTDLT EALKVEEDEAIAINCIGALRRVR+EERNNVISMLKSLKPR
Sbjct: 241 GVPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVISMLKSLKPR 300

Query: 301 VLTIVEEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIVR 360
           VLTIVEEEADFIS KN+FL CFEECLRFYTLYF+MLE+SFV TSNERL+LERECSR+IVR
Sbjct: 301 VLTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEDSFVTTSNERLVLERECSRSIVR 360

Query: 361 LLGCDNENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALL 420
           LLGCD    EE +GSERREKGKQWSKRLK++ FSLA FS+DV+DDVKALLKRYKPGWALL
Sbjct: 361 LLGCD--ESEEQMGSERREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALL 420

Query: 421 HRATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
            RA TT TA  T +V E D+    DS G+YLTWKEEPVVWVSAWKP
Sbjct: 421 RRAATTATA--TGEVHERDD----DSCGVYLTWKEEPVVWVSAWKP 455

[Close]

BLAST of Sed0012094 vs. ExPASy TrEMBL
Match: A0A1S3CCT8 (protein SHORT-ROOT-like OS=Cucumis melo OX=3656 GN=LOC103498966 PE=3 SV=1)

HSP 1 Score: 764.6 bits (1973), Expect = 2.3e-217
Identity = 396/469 (84.43%), Postives = 419/469 (89.34%), Query Frame = 0


Query: 1   MDITFFTAKDQVPTSFFNQSHDHL----HHHHLQFSNIDMQSSTSQSSEHSPEHSSSAAA 60
           MDITFFT K + PTSFFNQSHDH     HHHHL FSN+DMQSSTS SSE+SPEHS SAAA
Sbjct: 1   MDITFFTPK-EAPTSFFNQSHDHRHHHHHHHHLHFSNLDMQSSTSHSSEYSPEHSPSAAA 60

Query: 61  SAA---SSGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQAL 120
           +AA   ++GKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQAL
Sbjct: 61  AAATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQAL 120

Query: 121 FCRATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGE 180
           FCRATETGL+CYKTLV+VAEKNH+FDSALRLILKFQEASPWTTFGHV +NGAILEALEGE
Sbjct: 121 FCRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGE 180

Query: 181 SKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVSTTSIVKSLMKEIGQRMEKFAR 240
           +KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVV+TTSIVK LMKEIGQRMEKFAR
Sbjct: 181 TKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFAR 240

Query: 241 LMGVPFEFNPITNLNRLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLK 300
           LMGVPFEFNPITN+N LTDLTNEALKVEE EAIAINCIGALRRV+VEERNNVISMLK LK
Sbjct: 241 LMGVPFEFNPITNINHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKLLK 300

Query: 301 PRVLTIVEEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNI 360
           PRVLTIVEEEADFIS  NDFL CFEECLRFYTLYFEMLEESF ATSNERL+LERECSR+I
Sbjct: 301 PRVLTIVEEEADFISSTNDFLKCFEECLRFYTLYFEMLEESFGATSNERLVLERECSRSI 360

Query: 361 VRLLGCDNEN-DEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGW 420
           VRLLGCD++   EE +GSERREKGKQW+KRLK A FS A FS+DVMDDVKALLKRYKPGW
Sbjct: 361 VRLLGCDHDQISEEEMGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGW 420

Query: 421 ALLHRATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
           ALL  AT      E       +E G  + SGIYLTWKEEPVVWVSAWKP
Sbjct: 421 ALLRPATAAVGVDE-------EENGDAEPSGIYLTWKEEPVVWVSAWKP 461

[Close]

BLAST of Sed0012094 vs. ExPASy TrEMBL
Match: A0A6J1EZH2 (protein SHORT-ROOT-like OS=Cucurbita moschata OX=3662 GN=LOC111440607 PE=3 SV=1)

HSP 1 Score: 760.8 bits (1963), Expect = 3.4e-216
Identity = 390/467 (83.51%), Postives = 422/467 (90.36%), Query Frame = 0


Query: 1   MDITFFTAKDQVPTSFFNQSHDHLHHHHLQFSNIDMQSSTSQSSEHSPEHSSSAAASA-- 60
           MDITFFTAK + PT+FFNQSHD  HHHHL FSN+DMQSSTS SSE+SPE S SAAA+A  
Sbjct: 1   MDITFFTAK-EAPTTFFNQSHD--HHHHLHFSNLDMQSSTSHSSEYSPEQSPSAAAAAAA 60

Query: 61  --ASSGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCR 120
             A++GKW+STLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFC+
Sbjct: 61  TLAATGKWSSTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCK 120

Query: 121 ATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGESKL 180
           ATETGL+CYKTLV++A+KNHSFDS+L+LILKFQEASPWTTFGHV +NGAILEALEGE+KL
Sbjct: 121 ATETGLTCYKTLVAIADKNHSFDSSLKLILKFQEASPWTTFGHVASNGAILEALEGETKL 180

Query: 181 HIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVSTTSIVKSLMKEIGQRMEKFARLMG 240
           HIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVV+TT+IVKSLMKEIGQRMEKFARLMG
Sbjct: 181 HIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMG 240

Query: 241 VPFEFNPITNLNRLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLKPRV 300
           VPFEFNPITNL  LTDLT EALKVEEDEAIAINCIGALRRVR+EERNNV+SMLKSLKPRV
Sbjct: 241 VPFEFNPITNLENLTDLTKEALKVEEDEAIAINCIGALRRVRIEERNNVVSMLKSLKPRV 300

Query: 301 LTIVEEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILERECSRNIVRL 360
           LTIVEEEADFIS KN+FL CFEECLRFYTLYF+MLEESFV TSNERL+LERECSR+IVRL
Sbjct: 301 LTIVEEEADFISSKNNFLKCFEECLRFYTLYFDMLEESFVTTSNERLVLERECSRSIVRL 360

Query: 361 LGCDNENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALLH 420
           LGCD    EE +GSE+REKGKQWSKRLK++ FSLA FS+DV+DDVKALLKRYKPGWALL 
Sbjct: 361 LGCD--ESEEQMGSEKREKGKQWSKRLKESAFSLAEFSEDVLDDVKALLKRYKPGWALLR 420

Query: 421 RATTTTTAT--ETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
           RA TT T    E DD          DS G+YLTWKEEPVVWVSAWKP
Sbjct: 421 RAATTATGKVHERDD----------DSCGVYLTWKEEPVVWVSAWKP 452

[Close]

BLAST of Sed0012094 vs. ExPASy TrEMBL
Match: A0A5A7T902 (Protein SHORT-ROOT-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001130 PE=3 SV=1)

HSP 1 Score: 714.5 bits (1843), Expect = 2.8e-202
Identity = 368/430 (85.58%), Postives = 389/430 (90.47%), Query Frame = 0


Query: 36  MQSSTSQSSEHSPEHSSSAAASAA---SSGKWASTLLKECARAISEKDSNKIHHFLWMLN 95
           MQSSTS SSE+SPEHS SAAA+AA   ++GKWASTLLKECARAISEKDSNKIHHFLWMLN
Sbjct: 1   MQSSTSHSSEYSPEHSPSAAAAAATATATGKWASTLLKECARAISEKDSNKIHHFLWMLN 60

Query: 96  ELASPYGDSDQKMASYFLQALFCRATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEAS 155
           ELASPYGDSDQKMASYFLQALFCRATETGL+CYKTLV+VAEKNH+FDSALRLILKFQEAS
Sbjct: 61  ELASPYGDSDQKMASYFLQALFCRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEAS 120

Query: 156 PWTTFGHVGANGAILEALEGESKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVS 215
           PWTTFGHV +NGAILEALEGE+KLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVV+
Sbjct: 121 PWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVT 180

Query: 216 TTSIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNRLTDLTNEALKVEEDEAIAINCIG 275
           TTSIVK LMKEIGQRMEKFARLMGVPFEFNPITN+N LTDLTNEALKVEE EAIAINCIG
Sbjct: 181 TTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNINHLTDLTNEALKVEEGEAIAINCIG 240

Query: 276 ALRRVRVEERNNVISMLKSLKPRVLTIVEEEADFISPKNDFLNCFEECLRFYTLYFEMLE 335
           ALRRV+VEERNNVISMLK LKPRVLTIVEEEADFIS  NDFL CFEECLRFYTLYFEMLE
Sbjct: 241 ALRRVKVEERNNVISMLKLLKPRVLTIVEEEADFISSTNDFLKCFEECLRFYTLYFEMLE 300

Query: 336 ESFVATSNERLILERECSRNIVRLLGCDNEN-DEEIIGSERREKGKQWSKRLKDATFSLA 395
           ESF ATSNERL+LERECSR+IVRLLGCD++   EE +GSERREKGKQW+KRLK A FS A
Sbjct: 301 ESFGATSNERLVLERECSRSIVRLLGCDHDQISEEEMGSERREKGKQWTKRLKQALFSSA 360

Query: 396 GFSDDVMDDVKALLKRYKPGWALLHRATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEE 455
            FS+DVMDDVKALLKRYKPGWALL  AT      E       +E G  + SGIYLTWKEE
Sbjct: 361 NFSEDVMDDVKALLKRYKPGWALLRPATAAVGVDE-------EENGDAEPSGIYLTWKEE 420

Query: 456 PVVWVSAWKP 462
           PVVWVSAWKP
Sbjct: 421 PVVWVSAWKP 423

[Close]

BLAST of Sed0012094 vs. TAIR 10
Match: AT4G37650.1 (GRAS family transcription factor )

HSP 1 Score: 394.8 bits (1013), Expect = 9.4e-110
Identity = 222/500 (44.40%), Postives = 317/500 (63.40%), Query Frame = 0


Query: 5   FFTAKDQVPTSFFNQSHDHLHHHHLQFSNIDMQSSTSQSSEHSPEHSSSAAASA---ASS 64
           FF  ++ + +S  + +H + ++ +  +S     +    ++  +P  +++AAA A   +SS
Sbjct: 57  FFMDEEDLSSSSSHHNHHNHNNPNTYYSPFTTPTQYHPATSSTPSSTAAAAALASPYSSS 116

Query: 65  G-----------------------KWASTLLKECARAISEKDSNKIHHFLWMLNELASPY 124
           G                       KWA ++L E ARA S+KD+ +    LW LNEL+SPY
Sbjct: 117 GHHNDPSAFSIPQTPPSFDFSANAKWADSVLLEAARAFSDKDTARAQQILWTLNELSSPY 176

Query: 125 GDSDQKMASYFLQALFCRATETGLSCYKTLVSVA--EKNHSFDSALRLILKFQEASPWTT 184
           GD++QK+ASYFLQALF R T +G  CY+T+V+ A  EK  SF+S  + +LKFQE SPW T
Sbjct: 177 GDTEQKLASYFLQALFNRMTGSGERCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWAT 236

Query: 185 FGHVGANGAILEALEGESKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTV------ 244
           FGHV ANGAILEA++GE+K+HI+DIS+T CTQWPTLLE+LATR+DDTPHL+LT       
Sbjct: 237 FGHVAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANK 296

Query: 245 -VSTTSIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNRLTDLTNEALKVEEDEAIAIN 304
            V+  +    +MKEIG RMEKFARLMGVPF+FN I ++  L++     L V+ DE +AIN
Sbjct: 297 FVNDQTASHRMMKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAIN 356

Query: 305 CIGALRRV--RVEERNNVISMLKSLKPRVLTIVEEEADFISPK-----NDFLNCFEECLR 364
           C+GA+  +  R   R+ VIS  + L+PR++T+VEEEAD +  +     ++FL  F ECLR
Sbjct: 357 CVGAMHGIASRGSPRDAVISSFRRLRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLR 416

Query: 365 FYTLYFEMLEESFVATSNERLILERECSRNIVRLLGCDNENDEEIIGSERREKGKQWSKR 424
           ++ + FE  EESF  TSNERL+LER   R IV L+ C+  +      +ERRE  ++WS+R
Sbjct: 417 WFRVCFESWEESFPRTSNERLMLERAAGRAIVDLVACEPSD-----STERRETARKWSRR 476

Query: 425 LKDATFSLAGFSDDVMDDVKALLKRYKPG-WALLHRATTTTTATETDDVIEVDEVGGGDS 462
           ++++ F   G+SD+V DDV+ALL+RYK G W++                     V   D+
Sbjct: 477 MRNSGFGAVGYSDEVADDVRALLRRYKEGVWSM---------------------VQCPDA 530

[Close]

BLAST of Sed0012094 vs. TAIR 10
Match: AT3G49950.1 (GRAS family transcription factor )

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-44
Identity = 124/412 (30.10%), Postives = 203/412 (49.27%), Query Frame = 0


Query: 68  LLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKT 127
           LL  CA AI   D+   H  LW+LN +A P GDS Q++ S FL+AL  RA     +   T
Sbjct: 30  LLLHCATAIDSNDAALTHQILWVLNNIAPPDGDSTQRLTSAFLRALLSRAVSKTPTLSST 89

Query: 128 LVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGESKLHIIDISNTLCT 187
           +  + + +     ++  +  F + +PW  FG + AN AIL A+EG S +HI+D+S T C 
Sbjct: 90  ISFLPQADELHRFSVVELAAFVDLTPWHRFGFIAANAAILTAVEGYSTVHIVDLSLTHCM 149

Query: 188 QWPTLLESLATR-NDDTPHLKLTVVSTTS----IVKSLMKEIGQRMEKFARLMGVPFEFN 247
           Q PTL++++A+R N   P LKLTVVS++      +    +E+G ++  FA    +  EF 
Sbjct: 150 QIPTLIDAMASRLNKPPPLLKLTVVSSSDHFPPFINISYEELGSKLVNFATTRNITMEFT 209

Query: 248 --PITNLNRLTDLTNEALKV---EEDEAIAINCIGALRRVRVEE--------RNNVISML 307
             P T  +  + L  + L++     +EA+ +NC   LR +  E         R   +  L
Sbjct: 210 IVPSTYSDGFSSLLQQ-LRIYPSSFNEALVVNCHMMLRYIPEEPLTSSSSSLRTVFLKQL 269

Query: 308 KSLKPRVLTIVEEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILEREC 367
           +SL PR++T++EE+ D  S   + +N  +    ++ + F+  +      S +R   E E 
Sbjct: 270 RSLNPRIVTLIEEDVDLTS--ENLVNRLKSAFNYFWIPFDTTD---TFMSEQRRWYEAEI 329

Query: 368 SRNIVRLLGCDNENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYK 427
           S  I  ++    E  E +   ER E  ++W +R+++A F      +D + DVKA+L+ + 
Sbjct: 330 SWKIENVVA--KEGAERV---ERTETKRRWIERMREAEFGGVRVKEDAVADVKAMLEEHA 389

Query: 428 PGWALLHRATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWKP 462
            GW +           + +D          D   + LTWK   VV+ + W P
Sbjct: 390 VGWGM-----------KKED----------DDESLVLTWKGHSVVFATVWVP 409

[Close]

BLAST of Sed0012094 vs. TAIR 10
Match: AT2G04890.1 (SCARECROW-like 21 )

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-41
Identity = 117/400 (29.25%), Postives = 196/400 (49.00%), Query Frame = 0


Query: 68  LLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKT 127
           +L  CA+A+SE +       +  L  + S  G+  Q++ +Y L+ L  R   +G S YK+
Sbjct: 53  VLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKS 112

Query: 128 LVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGESKLHIIDISNTLCT 187
           L S   +++ F   L  +    E  P+  FG++ ANGAI EA++ E ++HIID      +
Sbjct: 113 LQSREPESYEF---LSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGS 172

Query: 188 QWPTLLESLATRNDDTPHLKLTVVSTTSIVKSLMKEIGQRMEKFARLMGVPFEFNPITNL 247
           QW  L+++ A R    P++++T V   S++ ++ K    R+EK A+   VPF FN ++  
Sbjct: 173 QWIALIQAFAARPGGAPNIRITGVGDGSVLVTVKK----RLEKLAKKFDVPFRFNAVSRP 232

Query: 248 NRLTDLTNEALKVEEDEAIAINCIGALRRVRVE------ERNNVISMLKSLKPRVLTIVE 307
           +   ++ N  L V + EA+ +N    L  +  E       R+ ++ M+KSL P+V+T+VE
Sbjct: 233 SCEVEVEN--LDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVE 292

Query: 308 EEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILEREC-SRNIVRLLGCD 367
           +E +  +  + FL  F E L +YT  FE ++        ER+ +E+ C +R++V ++ C 
Sbjct: 293 QECN--TNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIAC- 352

Query: 368 NENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALLHRATT 427
            E  E I   ER E   +W  R   A F     S  +   ++ALL+ Y  G+A+  R   
Sbjct: 353 -EGAERI---ERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAIEER--- 412

Query: 428 TTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWK 461
                                  +YL W +  +V   AWK
Sbjct: 413 --------------------DGALYLGWMDRILVSSCAWK 413

[Close]

BLAST of Sed0012094 vs. TAIR 10
Match: AT1G50600.1 (scarecrow-like 5 )

HSP 1 Score: 157.9 bits (398), Expect = 1.9e-38
Identity = 117/403 (29.03%), Postives = 188/403 (46.65%), Query Frame = 0


Query: 68  LLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMASYFLQALFCRATETGLSCYKT 127
           +L ECA+A+   D       +  L ++ S  G+  Q++ +Y L+ L  R   +G S YK 
Sbjct: 230 VLYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKA 289

Query: 128 LVSVAEKNHSFDSALRLILKFQEASPWTTFGHVGANGAILEALEGESKLHIIDISNTLCT 187
           L     K+ +    L  +    EA P+  FG+  ANGAI EA++ ES +HIID   +   
Sbjct: 290 LRC---KDPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGG 349

Query: 188 QWPTLLESLATRNDDTPHLKLTVVS---TTSIVKSLMKEIGQRMEKFARLMGVPFEFNPI 247
           QW +L+ +L  R    P++++T +    ++   +  ++ +GQR+ K A + GVPFEF+  
Sbjct: 350 QWVSLIRALGARPGGPPNVRITGIDDPRSSFARQGGLELVGQRLGKLAEMCGVPFEFHGA 409

Query: 248 TNLNRLTDLTNEALKVEEDEAIAINCIGALRR-----VRVE-ERNNVISMLKSLKPRVLT 307
                 T++  E L V   EA+A+N    L       V VE  R+ ++ ++K L P V+T
Sbjct: 410 ALC--CTEVEIEKLGVRNGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKHLSPNVVT 469

Query: 308 IVEEEADFISPKNDFLNCFEECLRFYTLYFEMLEESFVATSNERLILEREC-SRNIVRLL 367
           +VE+EA+  +    FL  F E +  Y   FE ++        ER+ +E+ C +R +V L+
Sbjct: 470 LVEQEAN--TNTAPFLPRFVETMNHYLAVFESIDVKLARDHKERINVEQHCLAREVVNLI 529

Query: 368 GCDNENDEEIIGSERREKGKQWSKRLKDATFSLAGFSDDVMDDVKALLKRYKPGWALLHR 427
            C+    E     ER E   +W  R   A F     S  V   +K LL+ Y   + L  R
Sbjct: 530 ACEGVERE-----ERHEPLGKWRSRFHMAGFKPYPLSSYVNATIKGLLESYSEKYTLEER 589

Query: 428 ATTTTTATETDDVIEVDEVGGGDSSGIYLTWKEEPVVWVSAWK 461
                                     +YL WK +P++   AW+
Sbjct: 590 -----------------------DGALYLGWKNQPLITSCAWR 597

[Close]

BLAST of Sed0012094 vs. TAIR 10
Match: AT5G48150.1 (GRAS family transcription factor )

HSP 1 Score: 151.8 bits (382), Expect = 1.4e-36
Identity = 117/431 (27.15%), Postives = 200/431 (46.40%), Query Frame = 0


Query: 51  SSSAAASAASSGKWASTL-----------LKECARAISEKDSNKIHHFLWMLNELASPYG 110
           S  + AS   +G W STL           L  CA+A+SE D    H  +  L ++ S  G
Sbjct: 95  SFDSTASQEING-WRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSG 154

Query: 111 DSDQKMASYFLQALFCRATETGLSCYKTLVSVAEKNHSFDSALRLILKFQEASPWTTFGH 170
           +  Q++ +Y L+ L  +   +G S YK L    E   +    L  +    E  P+  FG+
Sbjct: 155 EPIQRLGAYLLEGLVAQLASSGSSIYKALNRCPEP--ASTELLSYMHILYEVCPYFKFGY 214

Query: 171 VGANGAILEALEGESKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVSTTSIVKS 230
           + ANGAI EA++ E+++HIID      +QW TL+++ A R    P +++T +   +   +
Sbjct: 215 MSANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYA 274

Query: 231 L---MKEIGQRMEKFARLMGVPFEFNPITNLNRLTDLTNEALKVEEDEAIAINCIGALRR 290
               +  +G R+ K A+   VPFEFN ++    ++++  + L V   EA+A+N    L  
Sbjct: 275 RGGGLSIVGNRLAKLAKQFNVPFEFNSVS--VSVSEVKPKNLGVRPGEALAVNFAFVLHH 334

Query: 291 VRVE------ERNNVISMLKSLKPRVLTIVEEEADFISPKNDFLNCFEECLRFYTLYFEM 350
           +  E       R+ ++ M+KSL P+V+T+VE+E++  +    F   F E + +Y   FE 
Sbjct: 335 MPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESN--TNTAAFFPRFMETMNYYAAMFES 394

Query: 351 LEESFVATSNERLILEREC-SRNIVRLLGCDNENDEEIIGSERREKGKQWSKRLKDATFS 410
           ++ +      +R+ +E+ C +R++V ++ C+  +       ER E   +W  R   A F+
Sbjct: 395 IDVTLPRDHKQRINVEQHCLARDVVNIIACEGAD-----RVERHELLGKWRSRFGMAGFT 454

Query: 411 LAGFSDDVMDDVKALLKRYKPGWALLHRATTTTTATETDDVIEVDEVGGGDSSGIYLTWK 461
               S  V   +K+LL+ Y   + L  R                          +YL W 
Sbjct: 455 PYPLSPLVNSTIKSLLRNYSDKYRLEER-----------------------DGALYLGWM 490

The following BLAST results are available for this feature:

BLAST of Sed0012094 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906992.1	5.0e-222	87.45	protein SHORT-ROOT-like [Benincasa hispida]	[more]
XP_004153213.1	3.6e-220	85.68	protein SHORT-ROOT [Cucumis sativus] >KGN46310.1 hypothetical protein Csa_005353...	[more]
XP_023548769.1	1.7e-217	83.97	protein SHORT-ROOT-like [Cucurbita pepo subsp. pepo]	[more]
XP_022992254.1	2.8e-217	84.33	protein SHORT-ROOT-like [Cucurbita maxima]	[more]
XP_008460030.1	4.8e-217	84.43	PREDICTED: protein SHORT-ROOT-like [Cucumis melo]	[more]

BLAST of Sed0012094 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZF7	1.3e-108	44.40	Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1	[more]
A2XIA8	1.4e-105	46.78	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1	[more]
Q75I13	1.8e-105	46.78	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1	[more]
A2YN56	3.2e-102	45.04	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1	[more]
Q8H2X8	4.1e-102	45.04	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2	[more]

BLAST of Sed0012094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K966	1.7e-220	85.68	GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G081510 PE=3 S...	[more]
A0A6J1JX21	1.4e-217	84.33	protein SHORT-ROOT-like OS=Cucurbita maxima OX=3661 GN=LOC111488628 PE=3 SV=1	[more]
A0A1S3CCT8	2.3e-217	84.43	protein SHORT-ROOT-like OS=Cucumis melo OX=3656 GN=LOC103498966 PE=3 SV=1	[more]
A0A6J1EZH2	3.4e-216	83.51	protein SHORT-ROOT-like OS=Cucurbita moschata OX=3662 GN=LOC111440607 PE=3 SV=1	[more]
A0A5A7T902	2.8e-202	85.58	Protein SHORT-ROOT-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Sed0012094 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37650.1	9.4e-110	44.40	GRAS family transcription factor	[more]
AT3G49950.1	1.1e-44	30.10	GRAS family transcription factor	[more]
AT2G04890.1	1.1e-41	29.25	SCARECROW-like 21	[more]
AT1G50600.1	1.9e-38	29.03	scarecrow-like 5	[more]
AT5G48150.1	1.4e-36	27.15	GRAS family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 67..460 e-value: 2.6E-93 score: 312.9
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 33..460
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 56..460 score: 67.553757
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..56
None	No IPR available	PANTHER	PTHR31636:SF194	PROTEIN SHORT-ROOT-LIKE	coord: 33..460

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012094.1	Sed0012094.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding