Sed0012084 (gene) Chayote v1

Overview


Name	Sed0012084
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 6A-like
Location	LG07: 7629822 .. 7633167 (+)
RNA-Seq Expression	Sed0012084
Synteny	Sed0012084

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTAACGAAAGTTGAGGGAGCAAATTGATATTTCAAAGAATTAAGCCGCTATATTAATTGTAGTATATATTCAAGTTCGTCGTTGTGGGTTTACTTTCCAAGTTCTAAGGGTTTCAGGCCATAACCAGAGAGCGCGACAATCGTTCTTCTGTCGATCATTAATGGCGGACGACGATTACAATGACCCGGACATGGGGTTCTCTCTCTATCTCGCTATTTATCTTTTTGAATATGTTTTTGTCGAATCTTTTCATGTTACTCTGCTCAAATTGGTTAGAAATTTTCAATGCAAAACCCTAATTTCCAAAACTATGTTCGTTCTTTCAACTTCAAGTTGCTTCACTACGGATTTGGTATTTAACTTGTTAGGGGAAATAGTTTGGTGTGGTGAACTATCTTTTAGGTGCCCTCCCGAGGGGTGGCACAGTCGTTGAAGACTTGGGCTTTGAGGGTATGCTTCCCTCAAGGTTCGAGTCTAAGCTGTGACATTGCTCTTTCGATGTCTCTTGCTGTCTGGCCTAGGGACGGGCATGGTTACCCTTGTTTCAAGAAAAAAGAAATATCTTTTAGGTGCTACGAAGAGCGATTCTGTATCAGTCTGATTTTCTGTTGCTAGGAGCATATGTAACATAAAATCTTCATTAGCAACATCCAAAGACTACTCTGAGTATTATCGATTCGAATTTGGCTTCTGTTCACTTTATTCCCTGTCTTATGCACCTTTTCCTATTTGCATAAATAACTCAGTCCTGGCTGCTATAAATTATAATACAGTTGATTCATATGATTTCTGTACCATGTTAGTGCTTTGCAAGTTTGCATCACATTTTCTGAAGTTTGTCCTTGGTTTGGGTTATAAGTTTTATTAGTTATGCAAAATGTACGCAAGAAAAGTAGATAACTGTGGTATAGTTATTCAAATCTATGGCTATGGATGAGGACTGAAAATCTAACTCTTGGGGCAACGCACAATGGTTTGCTATTTGAAGTAAACATGCTAGTACTCCATTCTTAATTTGACCTCACGGTTATAATCTTGTTTTGTGGAAGGTCTTCATATTTTCATCTAGGATGATTTGAAGGAACTCACATCTTTCAGCTCTTGTATTAATAAATGGCTTTTTCTGCAGATATGAAGATGAGCCACCAGAACCCGAGATGGAGGTAAGAAATTAGTTATTCTGTTGTATTTGCAAGAATGCAGACAGCTATTCTTTCTTAAGTCGATTAGTTACTGTGAATGATGTACAGGATGGAGCTGAAGAAGAATTGGATAATAATAACAATGATGATGTTCCTGGTGAAGCTGTTGAAGATGAGGGAAAGGAAGATGCAGAACCGGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACGAAGTATGAACGTGCTAGAATTTTGGGTACTCGTGCCCTCCAAATCAGGTTCTCTTTTTGGACCATTTTTACATCCAAACTTGTACGTGCATCAAGTTGTAAATGGTATGATGATTCTTTTTTCTTTTGGCCAGCATGAATGCCCCTGTGATGGTCGAGTTGGAGGGTGAGACAGATCCACTTGAGGTTAGATTTTTAAATGTTGTGCTAAGATCTTTGAAAAGCTTCCTTTTTAGTTTTGGCATTCGTTAGATGTATTTAAGTTGCCACGTATGTGCATTGCATGGTTAGTGGTATGGCTACTCGAAAGTAAAATATTAAATTGAATCATACAAAGATGCTCCTGGGGTTAAGGAAGCCTTTTAAACAATATGGTATGATTGGTCCTCAAGTTCTCAGGTTCGAGACTCAGCTGTGACATTACTCTTTTGATATCTCTCGGTACCTGGCCGAGGGATGGGCATGGTTACCCTTGTTTAAAAAAAAAATGGTAGGATTGAAAACCAACGCAAAAGTTTAAAGGTAATTTTCATCAAGACGTGTAACATTTCTAAATTAAATCAACCCACCTCAAGATATCTGTTGGATGCCATTCATGGGTGTAGCTTACCAAGTTACTAAAACTGATATTACTGCTTATAATTATTATACTACTTCATGCTCGTTTAGTGAGTGAGGATTTATGCTCATTTTTGTCGATCTTGAGTGCTCATTGTTTTGTTTGGTTTGGCATCATTCTCTGACATCTCATCCTTGACTGTCTTAGATTGCCATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGGTCAGACCTTTTAGATCTTATTCTTTTTTCTCTATCAATTGGATTCACCTGCTAAAGGAGCTGGTTCAGAAAACTGAAAACGAGCTGTTTTTTATATGTAGCATATATTTGTATAAGGTTTGGTTTGCTTTTAAAGAAACCTTAGTTTGTCGGCTTCGAAAAAATCAGCACAGCTTTCTTTCCCAAGCCCCCGGGGTTTGAGTTGATCCGACTGTGAGTTTGAAACTAGTTTTTGAGGGGGGGAGTTCTGCTTTTTGAATTTGAATTCAACCGCTATTGGGGTGGGGATTTAAACTTGTAACTTCTTTGTCATTGGGAATCTGTGTGAGGTTTGGTTTTTGGATTTCTTAGAAACCAAATTGTTGAGATATGTCTTGAACTGTTTGATGCCTCACGATTATTTAGTTGGGGGTCTAGTCAGTGAGTCGAGGTTCAGGGCGAGGCTCCTAGTAGGGACTTCCCCAGAAACCTAGACAAAATATGTAATTAGGTTTATATTTTCGCATTTGTGTAATTTGGGCTTATTTTGTGAGAGTTTTATGAGACTTTATTATATAAACTCTTTTAAAACCTTAGTCCCAGTTGATCGACATTATATAATTTGTATTTTCTTTAATAAAATCGTTTTTTTCCTCCACTCGTGGATGTAACTAATCCATCATTAGCGAATCACGTAAATCTATGCATTTTTCTCTCACGTATGGGAGTTTCTGTTGATTAATCAAACTTCTGTGTGGGATAAAGATTAAACGCTAAATGTCGAAACTTTGTCTTGATTTTGCCCAGTTATGAAGACTGGGGCGTTGATGAACTTATTGTGGAGGACTCTTGGAAGAGGCAAGTTGGTGGCGCTTGATTCCTTGGTTGTGTGGCTGTCACTGTATGTGAGATATAATAGTTTCAACTGCTTACCGAATAGGACAACTATGTTCCCCATTTAATCACATTATTTTTTTGTTGAATAACTTATCTATAATATGTTGGAAAGATACCATTACCATGATTGGATCAATGATCAAGAAATATTGCAGGTTTAGATGTTTTTCAGTGAAACAGGTAATATATGTATAGAGTTGTACTCGGTTGGGTGATGTGAAAAATTATTGTTTTGCTTTTAATCAACATTTTTGTCGAG

mRNA sequence

TATTAACGAAAGTTGAGGGAGCAAATTGATATTTCAAAGAATTAAGCCGCTATATTAATTGTAGTATATATTCAAGTTCGTCGTTGTGGGTTTACTTTCCAAGTTCTAAGGGTTTCAGGCCATAACCAGAGAGCGCGACAATCGTTCTTCTGTCGATCATTAATGGCGGACGACGATTACAATGACCCGGACATGGGATATGAAGATGAGCCACCAGAACCCGAGATGGAGGATGGAGCTGAAGAAGAATTGGATAATAATAACAATGATGATGTTCCTGGTGAAGCTGTTGAAGATGAGGGAAAGGAAGATGCAGAACCGGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACGAAGTATGAACGTGCTAGAATTTTGGGTACTCGTGCCCTCCAAATCAGCATGAATGCCCCTGTGATGGTCGAGTTGGAGGGTGAGACAGATCCACTTGAGATTGCCATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAACTTATTGTGGAGGACTCTTGGAAGAGGCAAGTTGGTGGCGCTTGATTCCTTGGTTGTGTGGCTGTCACTGTATGTGAGATATAATAGTTTCAACTGCTTACCGAATAGGACAACTATGTTCCCCATTTAATCACATTATTTTTTTGTTGAATAACTTATCTATAATATGTTGGAAAGATACCATTACCATGATTGGATCAATGATCAAGAAATATTGCAGGTTTAGATGTTTTTCAGTGAAACAGGTAATATATGTATAGAGTTGTACTCGGTTGGGTGATGTGAAAAATTATTGTTTTGCTTTTAATCAACATTTTTGTCGAG

Coding sequence (CDS)

ATGGCGGACGACGATTACAATGACCCGGACATGGGATATGAAGATGAGCCACCAGAACCCGAGATGGAGGATGGAGCTGAAGAAGAATTGGATAATAATAACAATGATGATGTTCCTGGTGAAGCTGTTGAAGATGAGGGAAAGGAAGATGCAGAACCGGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACGAAGTATGAACGTGCTAGAATTTTGGGTACTCGTGCCCTCCAAATCAGCATGAATGCCCCTGTGATGGTCGAGTTGGAGGGTGAGACAGATCCACTTGAGATTGCCATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGCTACCTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAACTTATTGTGGAGGACTCTTGGAAGAGGCAAGTTGGTGGCGCTTGA

Protein sequence

MADDDYNDPDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

Homology

[Close]

BLAST of Sed0012084 vs. NCBI nr
Match: XP_022923151.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >XP_022984652.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_022984654.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_023551729.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita pepo subsp. pepo] >KAG6576740.1 DNA-directed RNA polymerases II, IV and V subunit 6A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014784.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.2 bits (674), Expect = 6.4e-67
Identity = 135/143 (94.41%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 1   MADDDYNDPDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRKT 60
           MADDDYND DMGY+DEPPEPE+E+GAEEELDNNNNDDVPGE VE E KED EPVERVRKT
Sbjct: 1   MADDDYNDLDMGYDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0012084 vs. NCBI nr
Match: XP_022944842.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >XP_022968530.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_023541080.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita pepo subsp. pepo] >KAG7013212.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.8 bits (673), Expect = 8.3e-67
Identity = 135/143 (94.41%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MADDDYNDPDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRKT 60
           MADDDYND DMGYEDEPPEPEME+GAEEELDNNN DDVPGE VE E KED EP+ERVRKT
Sbjct: 1   MADDDYNDVDMGYEDEPPEPEMEEGAEEELDNNNADDVPGEPVEAEDKEDEEPIERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0012084 vs. NCBI nr
Match: XP_022141284.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Momordica charantia])

HSP 1 Score: 262.7 bits (670), Expect = 1.9e-66
Identity = 136/143 (95.10%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MADDDYNDPDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRKT 60
           MADDDYND DMGYEDEPPEPEME+GAEEELDNNNNDDV GE VE E KED EPVERVRKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEMEEGAEEELDNNNNDDVLGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0012084 vs. NCBI nr
Match: XP_004140788.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis sativus] >KGN57349.1 hypothetical protein Csa_009934 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 3.5e-65
Identity = 131/143 (91.61%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 1   MADDDYNDPDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRKT 60
           MADDDYND DMGYEDEPPEPE+E+GAEEEL+NNNNDD+PGE VE E KED EP+ R RKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELENNNNDDIPGEPVEAEEKEDEEPIVRARKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0012084 vs. NCBI nr
Match: XP_008439178.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 6.0e-65
Identity = 132/143 (92.31%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MADDDYNDPDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRKT 60
           MADDDYND DMGYEDEPPEPE+E+GAEEELDN NNDD+ GE VE E KED EPVER RKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0012084 vs. ExPASy Swiss-Prot
Match: Q9FJ98 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=3702 GN=NRPB6A PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.3e-58
Identity = 116/143 (81.12%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MADDDYND-PDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRK 60
           MAD+DYND  D+GYEDEP EPE+E+G EE+++   NDDV GE +E E K + EPV+R RK
Sbjct: 1   MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
           GS+E+WGVDELIVEDSWKRQVGG
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Sed0012084 vs. ExPASy Swiss-Prot
Match: Q9SJ96 (DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702 GN=NRPB6B PE=1 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.1e-56
Identity = 115/143 (80.42%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MADDDYND-PDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRK 60
           MADDDYN+  D+GYEDEP EPE+E+G EE+ D   NDDV  + +E E K + EPV+R RK
Sbjct: 1   MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
            SYE+WGVDELIVEDSWKRQVGG
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Sed0012084 vs. ExPASy Swiss-Prot
Match: P61219 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10090 GN=Polr2f PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-29
Identity = 74/123 (60.16%), Postives = 87/123 (70.73%), Query Frame = 0


Query: 27  EEELDNNNNDDVPG-------EAVEDEGKEDAE--------PVERVRKTSKFMTKYERAR 86
           E+  D ++ DDV         E  E+EG+E+ E           + R T+ +MTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 87  ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 135
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

[Close]

BLAST of Sed0012084 vs. ExPASy Swiss-Prot
Match: O88828 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus OX=10116 GN=Polr2f PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-29
Identity = 74/123 (60.16%), Postives = 87/123 (70.73%), Query Frame = 0


Query: 27  EEELDNNNNDDVPG-------EAVEDEGKEDAE--------PVERVRKTSKFMTKYERAR 86
           E+  D ++ DDV         E  E+EG+E+ E           + R T+ +MTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 87  ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 135
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

[Close]

BLAST of Sed0012084 vs. ExPASy Swiss-Prot
Match: P61217 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus OX=10029 GN=POLR2F PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.5e-29
Identity = 74/123 (60.16%), Postives = 87/123 (70.73%), Query Frame = 0


Query: 27  EEELDNNNNDDVPG-------EAVEDEGKEDAE--------PVERVRKTSKFMTKYERAR 86
           E+  D ++ DDV         E  E+EG+E+ E           + R T+ +MTKYERAR
Sbjct: 5   EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERAR 64

Query: 87  ILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELI 135
           +LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI
Sbjct: 65  VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELI 124

[Close]

BLAST of Sed0012084 vs. ExPASy TrEMBL
Match: A0A6J1J2R7 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX=3661 GN=LOC111482872 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.1e-67
Identity = 135/143 (94.41%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 1   MADDDYNDPDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRKT 60
           MADDDYND DMGY+DEPPEPE+E+GAEEELDNNNNDDVPGE VE E KED EPVERVRKT
Sbjct: 1   MADDDYNDLDMGYDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0012084 vs. ExPASy TrEMBL
Match: A0A6J1E614 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita moschata OX=3662 GN=LOC111430903 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.1e-67
Identity = 135/143 (94.41%), Postives = 138/143 (96.50%), Query Frame = 0


Query: 1   MADDDYNDPDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRKT 60
           MADDDYND DMGY+DEPPEPE+E+GAEEELDNNNNDDVPGE VE E KED EPVERVRKT
Sbjct: 1   MADDDYNDLDMGYDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0012084 vs. ExPASy TrEMBL
Match: A0A6J1HXF2 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX=3661 GN=LOC111467735 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.0e-67
Identity = 135/143 (94.41%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MADDDYNDPDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRKT 60
           MADDDYND DMGYEDEPPEPEME+GAEEELDNNN DDVPGE VE E KED EP+ERVRKT
Sbjct: 1   MADDDYNDVDMGYEDEPPEPEMEEGAEEELDNNNADDVPGEPVEAEDKEDEEPIERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0012084 vs. ExPASy TrEMBL
Match: A0A6J1FZ93 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita moschata OX=3662 GN=LOC111449252 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.0e-67
Identity = 135/143 (94.41%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MADDDYNDPDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRKT 60
           MADDDYND DMGYEDEPPEPEME+GAEEELDNNN DDVPGE VE E KED EP+ERVRKT
Sbjct: 1   MADDDYNDVDMGYEDEPPEPEMEEGAEEELDNNNADDVPGEPVEAEDKEDEEPIERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0012084 vs. ExPASy TrEMBL
Match: A0A6J1CI61 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Momordica charantia OX=3673 GN=LOC111011721 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 9.0e-67
Identity = 136/143 (95.10%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MADDDYNDPDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRKT 60
           MADDDYND DMGYEDEPPEPEME+GAEEELDNNNNDDV GE VE E KED EPVERVRKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEMEEGAEEELDNNNNDDVLGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Sed0012084 vs. TAIR 10
Match: AT5G51940.1 (RNA polymerase Rpb6 )

HSP 1 Score: 225.7 bits (574), Expect = 2.3e-59
Identity = 116/143 (81.12%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MADDDYND-PDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRK 60
           MAD+DYND  D+GYEDEP EPE+E+G EE+++   NDDV GE +E E K + EPV+R RK
Sbjct: 1   MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
           GS+E+WGVDELIVEDSWKRQVGG
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Sed0012084 vs. TAIR 10
Match: AT2G04630.1 (RNA polymerase Rpb6 )

HSP 1 Score: 219.2 bits (557), Expect = 2.2e-57
Identity = 115/143 (80.42%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 1   MADDDYND-PDMGYEDEPPEPEMEDGAEEELDNNNNDDVPGEAVEDEGKEDAEPVERVRK 60
           MADDDYN+  D+GYEDEP EPE+E+G EE+ D   NDDV  + +E E K + EPV+R RK
Sbjct: 1   MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
            SYE+WGVDELIVEDSWKRQVGG
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGG 143

The following BLAST results are available for this feature:

BLAST of Sed0012084 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923151.1	6.4e-67	94.41	DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >...	[more]
XP_022944842.1	8.3e-67	94.41	DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >...	[more]
XP_022141284.1	1.9e-66	95.10	DNA-directed RNA polymerases II, IV and V subunit 6A [Momordica charantia]	[more]
XP_004140788.1	3.5e-65	91.61	DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis sativus] >KGN57349...	[more]
XP_008439178.1	6.0e-65	92.31	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo]	[more]

BLAST of Sed0012084 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ98	3.3e-58	81.12	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=...	[more]
Q9SJ96	3.1e-56	80.42	DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702...	[more]
P61219	1.9e-29	60.16	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10...	[more]
O88828	1.9e-29	60.16	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus ...	[more]
P61217	2.5e-29	60.16	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus...	[more]

BLAST of Sed0012084 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J2R7	3.1e-67	94.41	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX...	[more]
A0A6J1E614	3.1e-67	94.41	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita moschata ...	[more]
A0A6J1HXF2	4.0e-67	94.41	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX...	[more]
A0A6J1FZ93	4.0e-67	94.41	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita moschata ...	[more]
A0A6J1CI61	9.0e-67	95.10	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Momordica charantia OX=3...	[more]

BLAST of Sed0012084 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51940.1	2.3e-59	81.12	RNA polymerase Rpb6	[more]
AT2G04630.1	2.2e-57	80.42	RNA polymerase Rpb6	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006110	RNA polymerase, subunit omega/K/RPB6	SMART	SM01409	RNA_pol_Rpb6_2	coord: 58..111 e-value: 4.7E-6 score: 36.1
IPR006110	RNA polymerase, subunit omega/K/RPB6	PFAM	PF01192	RNA_pol_Rpb6	coord: 60..111 e-value: 6.0E-16 score: 58.1
IPR012293	RNA polymerase subunit, RPB6/omega	GENE3D	3.90.940.10		coord: 3..134 e-value: 2.2E-50 score: 171.9
IPR028363	DNA-directed RNA polymerase, subunit RPB6	PIRSF	PIRSF500154	RPB6	coord: 1..134 e-value: 9.7E-56 score: 185.7
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	PIRSF	PIRSF000778	RpoK/RPB6	coord: 1..134 e-value: 2.7E-48 score: 161.4
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	HAMAP	MF_00192	RNApol_arch_K	coord: 62..117 score: 18.504309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	PANTHER	PTHR10773	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2	coord: 1..142
None	No IPR available	PANTHER	PTHR10773:SF16	DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B	coord: 1..142
IPR020708	DNA-directed RNA polymerase, 14-18kDa subunit, conserved site	PROSITE	PS01111	RNA_POL_K_14KD	coord: 65..79
IPR036161	RPB6/omega subunit-like superfamily	SUPERFAMILY	63562	RPB6/omega subunit-like	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012084.1	Sed0012084.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005768	endosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0035091	phosphatidylinositol binding