Sed0012069 (gene) Chayote v1

Overview


Name	Sed0012069
Type	gene
Organism	Sechium edule (Chayote v1)
Description	ML domain-containing protein
Location	LG08: 24262687 .. 24266413 (-)
RNA-Seq Expression	Sed0012069
Synteny	Sed0012069

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTTTTCGGCAAAATAATGCATTTTTGTATCATTGAGTTTTATTTATTTTTTAAAATTAAATAGTATTTTTTTAATTATTATTTTAAGTCGTTTAGTGTTCTTCTTTCTTCACTCATTTTTCTTCAGATCGGCCGTTCAGTTCTGATCATCGACGATATCATGGACGGCCAATCTTTCAATCGCATCCTCTCTCTTCTCTTCGCCGTTCTTCTGCTCTTTCCGGCCATCTTCGCCGCCAAATTTGATTATTGCGGTCAGTTTCTCTGTATTCAGTTTTCTTTCTCATCGGAATTAACCTAATGACGAATTTGCCTTCTCTTTGTCGTTTGATTGTGATTCGATATCAGAAATATAGTAGGAATTTATGAATGTTTTGTATTCTGGATTTTTTCTAATTTTTTTGATGCCTGATTGTGAATTGGAATCAGATAGGAGAGGTAATTATCCCGTGAAAGTCGATAAACTTCTAGTTTCTCCTGATCCAGTGAAGAGTGGAAAGCCTGCCACGTTTACCGTTTCAGCCGCAACTGGTAAGCTTTCTCCGATTGTTTTCTTGTTCTTACCTCTTGGATTCTGCTTCGTATTGTATTATTTATGGATCAATACTGATTGAAGAGGTTAGCTATGGAATGAAATTGAAGTGTTTGATATGGATCTTAACCTCCTATTCGTAGCTATTTATTTAGGGTTTTTTTTTTCCATATTTGATGAGAACCTTGTTTAAGCAATCTTGGAAGGATTTTTATATAAATTTGAAGAATTCATCTGTAACTGTAAGTCTATTAATCTTTGCAATGATCTAATCATCTCAACTTGGATTGGGATCTATGTTTGGTCATGCATGATTTCTCTTTACACACCGAAAAAATAATTAACTGGTTGAACAAACCAGATTTGTCTCAAGAGTCTGCTTGTGGAAGCCCTCTGTCATAGATCTGGTCCAAGTTTGGTCTCCACATTCCTAGTGTACCTAGGAATGGTTTATGCCTTTACAGTGCAAGTCTTACACCACCTTTTTTGACTCTATTAGACACACTCTCTCATCTGGTTTGGAGTAGGTGTATTCTGATAGGCTAATATATTCTCTCAATTGTCGTACATCCGAATTTATTTTTCTGCACTGACTCAGAATCCTAGATTTATTGACCAGTACTCCTATACTAATGTAAGTTAATTATCTCATGCATCTTTTGCTGTCTTTTGTCTTACAAGTGACTAGTAGATTCCAGATTTCAAGCATCAACATTTTGTTAATTTTTTTAATACACTCAGTTAATTGTTGGAGGAGTTTCTTTACCATCACCCCTTTAGTGAAAAGGGTCACCGGCTGTGGCTAGTTTGCCCGTGTGTATGACTTTTTGTGGGATTGAGAGTCTGTTGAGTGAGGTGTGGCCCTTTGTTAGTTATCGTACTTCTCTTTGGGTCTCTGTTTGTAGTTAATTTGTTTATTTAATTTTTACGACTCGTACCTCTTTCTTAGATATCATACTTCTTTGGGGCTTGGAGAGGACGGGTGACCATATGATTTTTAGTGGGGTGGAGAGGCTGTCGGGTGAGGTGTGGTTATAGAAGCAAAGAACATGTTCGATCAAGGTTGGAAGTAAGACCTGTATGGTTTTCTGGCTATATAATTCTCTTTCGGAGCCTTGATCTTTGTAACGTGTTCTTCCTTGTCTATGGTTATCAAGCTCAAAACATCTGGGCACATTCATTTGATCTTCCCTCCTGCCTTTTTTTTTAAAAAAAATCTCTTGCCTTCTAGCTTCAATTACTAACAACTCAGAATTCACAAACTCTTCTTGAACTCTCATTTTGAGAACCGGAGATATCACTACGTTGCATATTTCTCTTCCAAGCGTGCCTACTCTCATTCTCTCAACCAATGAGGAATAAAAATTTGAGGAATATAAGAATAATGAACCCGATTTTTGAAAGGTTGAAAAGTCATTGGTAAAGTTTCAAACCAAAATGGCAGCCATCAGAACCCATAATACCCCTTACTAGTTGGGGTTGGGCTGACAACTGTGTGTGCATGTGTTTTTGTATTCCTCATGTTTTTTCAATGAAAGTTAGCCTCTAAAAAAAAAAAAAAAACTAATACAATTCAGTTCCCATTTTCTTGATTTCAAATAACCACTTTGGGTTTCTATCAAATTTGAGGGCTGAGTGGATGTAGTGGAGGTCAAAGGTGCTATTGCACTTTTGCGTTCCTCATGCTTGAGAAAATATTGGTTTATCCTTTGTTTTCCCACACTAATTCTCGGTGCAGTTTTGTGTGATTTTTTCGCTCACTCCAATGGTATTTTCGTTCTTCCTTGTGAAAGTTCCTCTCTTACAGGGTGATTAGTGGGCATGCGTTAAGGGACCGAGTGGCACACTTCATAGACAATGACAAACTACACGTGAAAGGCTTTGATGAATGCTTTTTAAAAATTTTGGAAATTTAATTGAAGATGTACGTTTGGTATGATTAGCAGTCTTAGATGAAGATTAGAAAGCTGAAAGTGAAACCTTAGGGTCTATGTTATGAGAACTGTTACCAAGTGGTGTGGGCAGTTGTGAACACTAGTCACTAGTTTTCCTTCAGAATCATTCATGGGTGTATTACTTTACATAGTTTAATTTGGTTATTTTTCTTTTAACCATCTGGTTAGATGCTCTTTATTCCTCTACAATAAATAAAGACAGTCACGGTAGCCTAATGGGAAATTATGAACACCAACGAACAACTAGGCTGGCTTACCAGGATGTAGAGGATGAAACTTTTATTGGAATTTCATTTAACAATTATAATCTGTTCCATACAGAGAAAGATCTCTCCGGTGGGAAGTTCGAGGTCGAGGTTTCTTTATTTGGCCTGCATATACATTCAGAAAGTCACGATCTTTGTGAAGTGACTTTGTGTCCTGTTAAACCTGGAAAATTCTCTTTAGCTCACTCACAAAGCTTACCGCCATTGACTCCACCAGTAAGTCTTGTTTGGTAGATTAATGTTTACTAAAATGTTATGTTGCCTTACAAATTTCATCTTGCTGTGCTTAAGCTGGCTGAATTTGGCAATTTATATTACAGGGTACGTATTCCGTTAAAATATTATTGAAAGATAGCGACAAGCACCAGTTGACATGCATCAGCTTCAAGCTCAAAATTGTTTTTGGTGATGGGGAATTAGCAACTTCTGAAGAATCCTCAGTTGCTGAGAGTTGAAGTTGGGCAGTTCAAGTTAATTTTCCTTTCTTCTCTGTTTTTCAACTGCAGTATGTGTTATATTTCTTCTGCTACTACTTCAAGGATTGATCTAATGCTCTTGTTGGTGTCTCTGTGTACAAATGTTTCTGGACAAATTTGGATTCTTCAATATGCAGCCGTTTTCGACATTCTGCTTCGGTGTAAGCTGGTTGGTTTATTTTTTTGTTATGATTTTCTTTTAATCAGAATCCACGCTAAACTGATCTATTGGTTTGCTTGAAAAAGCTATATTATAGAAGTCTTTATAAGTCCAATGGTTGGAATTTAGACCACTAACACTGAGAGGTTTTATACACTACAGACTTAATGTGCGCCTTTTCATTGACAACCACCTTGATCCCTTCAATGTCTTGTGCGACAATGTTGTTATTTGTGTAGCTTCTTGATGTCGTAAATCTTTTCTTTTCCATTACTATGACATTTCTACTCTTGCTTTAAATTGGATTTTTGTAATGTTTTTGTATCCCATCTTCTT

mRNA sequence

CATTTTTTCGGCAAAATAATGCATTTTTGTATCATTGAGTTTTATTTATTTTTTAAAATTAAATAGTATTTTTTTAATTATTATTTTAAGTCGTTTAGTGTTCTTCTTTCTTCACTCATTTTTCTTCAGATCGGCCGTTCAGTTCTGATCATCGACGATATCATGGACGGCCAATCTTTCAATCGCATCCTCTCTCTTCTCTTCGCCGTTCTTCTGCTCTTTCCGGCCATCTTCGCCGCCAAATTTGATTATTGCGATAGGAGAGGTAATTATCCCGTGAAAGTCGATAAACTTCTAGTTTCTCCTGATCCAGTGAAGAGTGGAAAGCCTGCCACGTTTACCGTTTCAGCCGCAACTGAGAAAGATCTCTCCGGTGGGAAGTTCGAGGTCGAGGTTTCTTTATTTGGCCTGCATATACATTCAGAAAGTCACGATCTTTGTGAAGTGACTTTGTGTCCTGTTAAACCTGGAAAATTCTCTTTAGCTCACTCACAAAGCTTACCGCCATTGACTCCACCAGGTACGTATTCCGTTAAAATATTATTGAAAGATAGCGACAAGCACCAGTTGACATGCATCAGCTTCAAGCTCAAAATTGTTTTTGGTGATGGGGAATTAGCAACTTCTGAAGAATCCTCAGTTGCTGAGAGTTGAAGTTGGGCAGTTCAAGTTAATTTTCCTTTCTTCTCTGTTTTTCAACTGCAGTATGTGTTATATTTCTTCTGCTACTACTTCAAGGATTGATCTAATGCTCTTGTTGGTGTCTCTGTGTACAAATGTTTCTGGACAAATTTGGATTCTTCAATATGCAGCCGTTTTCGACATTCTGCTTCGGTGTAAGCTGGTTGGTTTATTTTTTTGTTATGATTTTCTTTTAATCAGAATCCACGCTAAACTGATCTATTGGTTTGCTTGAAAAAGCTATATTATAGAAGTCTTTATAAGTCCAATGGTTGGAATTTAGACCACTAACACTGAGAGGTTTTATACACTACAGACTTAATGTGCGCCTTTTCATTGACAACCACCTTGATCCCTTCAATGTCTTGTGCGACAATGTTGTTATTTGTGTAGCTTCTTGATGTCGTAAATCTTTTCTTTTCCATTACTATGACATTTCTACTCTTGCTTTAAATTGGATTTTTGTAATGTTTTTGTATCCCATCTTCTT

Coding sequence (CDS)

ATGGACGGCCAATCTTTCAATCGCATCCTCTCTCTTCTCTTCGCCGTTCTTCTGCTCTTTCCGGCCATCTTCGCCGCCAAATTTGATTATTGCGATAGGAGAGGTAATTATCCCGTGAAAGTCGATAAACTTCTAGTTTCTCCTGATCCAGTGAAGAGTGGAAAGCCTGCCACGTTTACCGTTTCAGCCGCAACTGAGAAAGATCTCTCCGGTGGGAAGTTCGAGGTCGAGGTTTCTTTATTTGGCCTGCATATACATTCAGAAAGTCACGATCTTTGTGAAGTGACTTTGTGTCCTGTTAAACCTGGAAAATTCTCTTTAGCTCACTCACAAAGCTTACCGCCATTGACTCCACCAGGTACGTATTCCGTTAAAATATTATTGAAAGATAGCGACAAGCACCAGTTGACATGCATCAGCTTCAAGCTCAAAATTGTTTTTGGTGATGGGGAATTAGCAACTTCTGAAGAATCCTCAGTTGCTGAGAGTTGA

Protein sequence

MDGQSFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVSAATEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPGTYSVKILLKDSDKHQLTCISFKLKIVFGDGELATSEESSVAES

Homology

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BLAST of Sed0012069 vs. NCBI nr
Match: XP_008443632.1 (PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucumis melo])

HSP 1 Score: 268.5 bits (685), Expect = 3.9e-68
Identity = 131/161 (81.37%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 3   GQSFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVS 62
           G+SFNRI+ LLF VLLLFP IFAAKF+YCDRRGNYPVKVD+L VSPDPVKSG+PATFTVS
Sbjct: 4   GRSFNRIIFLLFTVLLLFPVIFAAKFEYCDRRGNYPVKVDELEVSPDPVKSGQPATFTVS 63

Query: 63  AATEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPGTY 122
           A+TEK+LSGGKF VEVSLFGLHIHSESHDLCE T CP+ PGKFSL+HSQSLPP TPPG+Y
Sbjct: 64  ASTEKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPPGSY 123

Query: 123 SVKILLKDSDKHQLTCISFKLKIVFGDGELATSEESSVAES 164
            VKI+L+DS   QLTCISFKLKIVFGD E A SE+S VAES
Sbjct: 124 VVKIILRDSKNQQLTCISFKLKIVFGDAESAISEKSLVAES 164

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BLAST of Sed0012069 vs. NCBI nr
Match: XP_022933704.1 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucurbita moschata])

HSP 1 Score: 267.3 bits (682), Expect = 8.6e-68
Identity = 133/163 (81.60%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MDGQSFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFT 60
           MDG+ F+RIL LLFAV LL PAIFAAKFDYCD+RGNYPVKVD L VSP PVK GKPATF 
Sbjct: 1   MDGRMFSRILFLLFAVHLLLPAIFAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA 60

Query: 61  VSAATEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPG 120
           VSA+TEK+LSGGKFEVEVSLFG+ IHSESHDLCE T CPVKPGKFSL+HSQSLPP TPPG
Sbjct: 61  VSASTEKNLSGGKFEVEVSLFGVRIHSESHDLCEATSCPVKPGKFSLSHSQSLPPFTPPG 120

Query: 121 TYSVKILLKDSDKHQLTCISFKLKIVFGDGELATSEESSVAES 164
            YSVKI+LKD+DK QLTCISFKLKIVFGD + A  EES VAES
Sbjct: 121 MYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 163

[Close]

BLAST of Sed0012069 vs. NCBI nr
Match: XP_023520653.1 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.2 bits (679), Expect = 1.9e-67
Identity = 132/163 (80.98%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MDGQSFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFT 60
           MDG+ F+RIL LLFAV LL PAI AAKFDYCD+RGNYPVKVD L VSP PVK GKPATF 
Sbjct: 1   MDGRMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA 60

Query: 61  VSAATEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPG 120
           VSA+TEK+LSGGKFEVEVSLFG+HIHSESHDLCE T CP+KPGKFSL+HSQSLPP TPPG
Sbjct: 61  VSASTEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPG 120

Query: 121 TYSVKILLKDSDKHQLTCISFKLKIVFGDGELATSEESSVAES 164
            YSVKI+LKD+DK QLTCISFKLKIVFGD + A  EES VAES
Sbjct: 121 MYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 163

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BLAST of Sed0012069 vs. NCBI nr
Match: KAG7022171.1 (putative phosphatidylglycerol/phosphatidylinositol transfer protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.6 bits (675), Expect = 5.6e-67
Identity = 131/163 (80.37%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MDGQSFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFT 60
           MDG+ F+RIL LLFAV LL PAI AAKFDYCD+RGNYPVKVD L VSP PVK GKPATF 
Sbjct: 1   MDGRMFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA 60

Query: 61  VSAATEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPG 120
           VSA++EK+LSGGKFEVEVSLFG+HIHSESHDLCE T CP+KPGKFSL+HSQSLPP TPPG
Sbjct: 61  VSASSEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPG 120

Query: 121 TYSVKILLKDSDKHQLTCISFKLKIVFGDGELATSEESSVAES 164
            YSVKI+LKD+DK QLTCISFKLKIVFGD + A  EES VAES
Sbjct: 121 MYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 163

[Close]

BLAST of Sed0012069 vs. NCBI nr
Match: XP_022141999.1 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Momordica charantia])

HSP 1 Score: 262.7 bits (670), Expect = 2.1e-66
Identity = 132/161 (81.99%), Postives = 142/161 (88.20%), Query Frame = 0


Query: 3   GQSFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVS 62
           G SF+RIL L FAV LLFPAIFAAKF+YCD+RGNY VKV  L VSPDPVKSGKPATFTVS
Sbjct: 4   GLSFDRILVLFFAVHLLFPAIFAAKFNYCDKRGNYAVKVAALEVSPDPVKSGKPATFTVS 63

Query: 63  AATEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPGTY 122
           A+T+K LSGGKF VEVSLFG+HIHSE+HDLCEVT CPV PGKFSLAHSQSLPP TPPG+Y
Sbjct: 64  ASTDKVLSGGKFGVEVSLFGMHIHSEAHDLCEVTSCPVVPGKFSLAHSQSLPPFTPPGSY 123

Query: 123 SVKILLKDSDKHQLTCISFKLKIVFGDGELATSEESSVAES 164
           SVKILLKD+   QLTCI+FKLKIVFGDGE A SEES VAES
Sbjct: 124 SVKILLKDNKNRQLTCINFKLKIVFGDGESAISEESLVAES 164

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BLAST of Sed0012069 vs. ExPASy Swiss-Prot
Match: Q9AST8 (MD-2-related lipid-recognition protein ROSY1 OS=Arabidopsis thaliana OX=3702 GN=ROSY1 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.4e-14
Identity = 46/147 (31.29%), Postives = 71/147 (48.30%), Query Frame = 0


Query: 5   SFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVSAA 64
           S  ++L LL   L   PA+   KF  CD    YP+KV  + +SPDPVK       T++  
Sbjct: 4   SHTQLLLLLLVSLFFSPALCGPKFQTCDTGKEYPLKVSSVEISPDPVKRSGNGEITITGV 63

Query: 65  TEKDLSGG---KFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPGT 124
           T K++S G     ++ V +F   + ++S+ LC++T CPV PG   L       P      
Sbjct: 64  TNKEISDGVTVNLKLAVGMF--PVSTKSYSLCDITACPVAPGPIVLTLPNIFTPREKRTA 123

Query: 125 YSVKILLKDSD---KHQLTCISFKLKI 146
               I++  +D   K  + CI F +K+
Sbjct: 124 IGYTIIISITDKPLKESMMCILFVVKL 148

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BLAST of Sed0012069 vs. ExPASy Swiss-Prot
Match: Q54SW1 (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0282179 PE=3 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-11
Identity = 38/139 (27.34%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 8   RILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVSAATEK 67
           + + LL    +L   +    ++YCD   N   K++KL + PDP   GK  T ++  +  +
Sbjct: 3   KTILLLLINFMLILIVNGDIWNYCDGNINPTFKINKLTLLPDPPLVGKEVTISLEGSLNE 62

Query: 68  DLSGGKFEVEVSLF----GLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPGTYS 127
            ++ G     V+ F       + +  +D+C+V  CPV  G F+ + S  +P  TP G Y 
Sbjct: 63  QITSGSSIFNVAFFINGGWRQLPTFHNDICKVLSCPVSAGPFTYSTSIKVPIFTPHGQYK 122

Query: 128 VKILLKDSDKHQLTCISFK 143
            ++ L D     +TC++F+
Sbjct: 123 GQLTLTDQSNRNVTCLTFQ 141

[Close]

BLAST of Sed0012069 vs. ExPASy Swiss-Prot
Match: Q5A8A2 (Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=NPC2 PE=3 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 6.5e-10
Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 0


Query: 29  DYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVSAATEKDLSGGKF-EVEVSLFGLHIHS 88
           + CD      + +D+++V+P+P  +G+  TFT     +K +  G + EVEV    + +  
Sbjct: 67  EVCDASEKQLLHLDEVIVTPNPPVAGQNLTFTAVGTLDKTIEEGAYVEVEVRYGFIKLIH 126

Query: 89  ESHDLCEVTL-----CPVKPGKFSLAHSQSLPPLTPPGTYSVKILLKDSDKHQLTCIS 141
           +++DLCE  +     CP+K GK ++  +  +P   PPG Y V       D   +TC++
Sbjct: 127 QTYDLCEEIVKVDLQCPIKSGKQTITKNVEIPEEVPPGKYLVVARAYTKDDEYITCLT 184

[Close]

BLAST of Sed0012069 vs. ExPASy Swiss-Prot
Match: Q4P580 (Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=NPC2 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.4e-09
Identity = 35/121 (28.93%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 35  GNYPVKVDKLLVSPDPVKSGKPATFTVSAATEKDLSGGKF-EVEVSLFGLHIHSESHDLC 94
           G+  V V+ ++VSPDP   G+  T       + ++S G F +V V L  + + +   D+C
Sbjct: 71  GDEVVNVESIVVSPDPPVPGQNLTVRAKGTVKDEVSDGTFADVIVKLGLIRLLARRFDVC 130

Query: 95  EVT-------LCPVKPGKFSLAHSQSLPPLTPPGTYSVKILLKDSDKHQLTCISFKLKIV 148
           E          CP+  G++ L H+ +LP   PPG ++V I  ++ D   L C+   ++  
Sbjct: 131 EQARESNADLQCPLSAGEYELEHTVALPREIPPGKFNVHITGENQDGSNLLCLDLSIQFG 190

[Close]

BLAST of Sed0012069 vs. ExPASy Swiss-Prot
Match: Q7RZ85 (Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=npc-2 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.9e-08
Identity = 33/120 (27.50%), Postives = 67/120 (55.83%), Query Frame = 0


Query: 30  YCDR---RGNYPVKVDKLLVSPDPVKSGKPATFTVSAATEKDLSGGKF-EVEVSLFGLHI 89
           +CD    R +  V +++++++P+P ++G+  T   S   ++ +  G +  ++V    + +
Sbjct: 42  FCDAAADRKDDIVTIEEVILTPNPPEAGQTLTIEASGIVKEAIEEGAYVNLQVKYGYIRL 101

Query: 90  HSESHDLCE----VTL-CPVKPGKFSLAHSQSLPPLTPPGTYSVKILLKDSDKHQLTCIS 141
            + S DLC+    V L CP+K G+ S+  +  LP   PPG Y+V+  + +SD   +TC++
Sbjct: 102 INTSADLCKEMKNVELECPIKKGRLSITKNVELPKEIPPGKYTVEADVYNSDDKHITCLT 161

[Close]

BLAST of Sed0012069 vs. ExPASy TrEMBL
Match: A0A1S3B808 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Cucumis melo OX=3656 GN=LOC103487184 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.9e-68
Identity = 131/161 (81.37%), Postives = 144/161 (89.44%), Query Frame = 0


Query: 3   GQSFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVS 62
           G+SFNRI+ LLF VLLLFP IFAAKF+YCDRRGNYPVKVD+L VSPDPVKSG+PATFTVS
Sbjct: 4   GRSFNRIIFLLFTVLLLFPVIFAAKFEYCDRRGNYPVKVDELEVSPDPVKSGQPATFTVS 63

Query: 63  AATEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPGTY 122
           A+TEK+LSGGKF VEVSLFGLHIHSESHDLCE T CP+ PGKFSL+HSQSLPP TPPG+Y
Sbjct: 64  ASTEKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPPGSY 123

Query: 123 SVKILLKDSDKHQLTCISFKLKIVFGDGELATSEESSVAES 164
            VKI+L+DS   QLTCISFKLKIVFGD E A SE+S VAES
Sbjct: 124 VVKIILRDSKNQQLTCISFKLKIVFGDAESAISEKSLVAES 164

[Close]

BLAST of Sed0012069 vs. ExPASy TrEMBL
Match: A0A6J1F0H6 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Cucurbita moschata OX=3662 GN=LOC111441041 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.2e-68
Identity = 133/163 (81.60%), Postives = 143/163 (87.73%), Query Frame = 0


Query: 1   MDGQSFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFT 60
           MDG+ F+RIL LLFAV LL PAIFAAKFDYCD+RGNYPVKVD L VSP PVK GKPATF 
Sbjct: 1   MDGRMFSRILFLLFAVHLLLPAIFAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA 60

Query: 61  VSAATEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPG 120
           VSA+TEK+LSGGKFEVEVSLFG+ IHSESHDLCE T CPVKPGKFSL+HSQSLPP TPPG
Sbjct: 61  VSASTEKNLSGGKFEVEVSLFGVRIHSESHDLCEATSCPVKPGKFSLSHSQSLPPFTPPG 120

Query: 121 TYSVKILLKDSDKHQLTCISFKLKIVFGDGELATSEESSVAES 164
            YSVKI+LKD+DK QLTCISFKLKIVFGD + A  EES VAES
Sbjct: 121 MYSVKIILKDTDKEQLTCISFKLKIVFGDEKSAIPEESLVAES 163

[Close]

BLAST of Sed0012069 vs. ExPASy TrEMBL
Match: A0A6J1CKB6 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Momordica charantia OX=3673 GN=LOC111012235 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.0e-66
Identity = 132/161 (81.99%), Postives = 142/161 (88.20%), Query Frame = 0


Query: 3   GQSFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVS 62
           G SF+RIL L FAV LLFPAIFAAKF+YCD+RGNY VKV  L VSPDPVKSGKPATFTVS
Sbjct: 4   GLSFDRILVLFFAVHLLFPAIFAAKFNYCDKRGNYAVKVAALEVSPDPVKSGKPATFTVS 63

Query: 63  AATEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPGTY 122
           A+T+K LSGGKF VEVSLFG+HIHSE+HDLCEVT CPV PGKFSLAHSQSLPP TPPG+Y
Sbjct: 64  ASTDKVLSGGKFGVEVSLFGMHIHSEAHDLCEVTSCPVVPGKFSLAHSQSLPPFTPPGSY 123

Query: 123 SVKILLKDSDKHQLTCISFKLKIVFGDGELATSEESSVAES 164
           SVKILLKD+   QLTCI+FKLKIVFGDGE A SEES VAES
Sbjct: 124 SVKILLKDNKNRQLTCINFKLKIVFGDGESAISEESLVAES 164

[Close]

BLAST of Sed0012069 vs. ExPASy TrEMBL
Match: A0A6J1KME8 (putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Cucurbita maxima OX=3661 GN=LOC111495487 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 130/163 (79.75%), Postives = 142/163 (87.12%), Query Frame = 0


Query: 1   MDGQSFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFT 60
           MDG+ F+RIL LLFAV LL PAI AAKFDYCD+RGNYPVKVD L VSP PVK GKPATF 
Sbjct: 1   MDGRIFSRILFLLFAVHLLLPAISAAKFDYCDKRGNYPVKVDGLKVSPYPVKGGKPATFA 60

Query: 61  VSAATEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPG 120
           VSA+TEK+LSGGKFEVEVSLFG+HIHSESHDLCE T CP+KPGKFSL+HSQSLPP TPPG
Sbjct: 61  VSASTEKNLSGGKFEVEVSLFGVHIHSESHDLCEETSCPIKPGKFSLSHSQSLPPFTPPG 120

Query: 121 TYSVKILLKDSDKHQLTCISFKLKIVFGDGELATSEESSVAES 164
            YSVKI+LKD +K QLTCISFKLKIVFGD + A  +ES VAES
Sbjct: 121 MYSVKIILKDMEKEQLTCISFKLKIVFGDEKSAIPKESLVAES 163

[Close]

BLAST of Sed0012069 vs. ExPASy TrEMBL
Match: A0A0A0LXM9 (ML domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G641040 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.9e-66
Identity = 127/161 (78.88%), Postives = 143/161 (88.82%), Query Frame = 0


Query: 3   GQSFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVS 62
           G+SFNRI+ LLFAVLLL P IFAAKF+YCDRRG+YPVKV +L VSPDPVKSG+PATFTVS
Sbjct: 4   GRSFNRIIFLLFAVLLLLPVIFAAKFEYCDRRGDYPVKVGELEVSPDPVKSGQPATFTVS 63

Query: 63  AATEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPGTY 122
           A+TEK+LSGGKF VEVSLFGLHIHSESHDLCE T CP+ PGKFSL+HSQSLPP TPPG+Y
Sbjct: 64  ASTEKNLSGGKFVVEVSLFGLHIHSESHDLCEETSCPIAPGKFSLSHSQSLPPFTPPGSY 123

Query: 123 SVKILLKDSDKHQLTCISFKLKIVFGDGELATSEESSVAES 164
           +VKI+L+DS   QLTCI+FKLKIVFGD E A SE+  VAES
Sbjct: 124 TVKIILRDSKNQQLTCINFKLKIVFGDAESAISEKYLVAES 164

[Close]

BLAST of Sed0012069 vs. TAIR 10
Match: AT3G44100.1 (MD-2-related lipid recognition domain-containing protein )

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-36
Identity = 73/146 (50.00%), Postives = 100/146 (68.49%), Query Frame = 0


Query: 9   ILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVSAATEKD 68
           +L LL +V  L PA+ A  F YCD+R + PVKV  + +SPDPV SG  ATF +  +T +D
Sbjct: 9   LLLLLLSVFFL-PALHATSFTYCDKRLD-PVKVTGVKISPDPVVSGAAATFKIFGSTGED 68

Query: 69  LSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPGTYSVKILL 128
           +SGGK  + V   G+ +H+E+HDLC+ T CPV PG F L+HSQ+LP +TPPGTY++K+ +
Sbjct: 69  ISGGKVVIRVLYVGIPVHTETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKMTI 128

Query: 129 KDSDKHQLTCISFKLKIVFGDGELAT 155
            D +  +LTCISFK KI  G    A+
Sbjct: 129 NDKNGGRLTCISFKFKITVGSAVFAS 152

[Close]

BLAST of Sed0012069 vs. TAIR 10
Match: AT3G11780.1 (MD-2-related lipid recognition domain-containing protein / ML domain-containing protein )

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-33
Identity = 71/144 (49.31%), Postives = 90/144 (62.50%), Query Frame = 0


Query: 6   FNRILSLLFAVLLLFPAIFAA-KFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVSAA 65
           F    SL  +  LL   I AA    YCD    Y VKV  + ++P P+  G+PATF +SA 
Sbjct: 4   FTGFSSLAISYFLLVSTIVAATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISAN 63

Query: 66  TEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPGTYSV 125
           T+ ++S GK  +EVS FG HIHSE+HDLC+ T CPV  G F +AHSQ LP  TPPG+YS+
Sbjct: 64  TDTEISSGKLVIEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPGSYSL 123

Query: 126 KILLKDSDKHQLTCISFKLKIVFG 149
           K+ + D  K +LTCI F   I FG
Sbjct: 124 KMKMLDGRKKELTCIKFSFDIGFG 147

[Close]

BLAST of Sed0012069 vs. TAIR 10
Match: AT5G06480.1 (Immunoglobulin E-set superfamily protein )

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-33
Identity = 66/136 (48.53%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 10  LSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVSAATEKDL 69
           L+ +F +LL+ P I A    YC+    Y VKV ++ +SP+P+  G+PATFT+SA T +++
Sbjct: 10  LAAVFLLLLVSP-IVAIDVHYCEENAEYEVKVKEVDISPNPIAPGEPATFTISANTGREI 69

Query: 70  SGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPGTYSVKILLK 129
           S GK  +EVS FG H+HSE+HDLC  T CP++ G F +AHSQ LP  TPPG+Y +K+ + 
Sbjct: 70  SFGKLVIEVSYFGWHVHSETHDLCTETSCPIQTGDFLVAHSQVLPGYTPPGSYLLKMKML 129

Query: 130 DSDKHQLTCISFKLKI 146
           D+ K +LTCI F   I
Sbjct: 130 DAKKKELTCIKFSFDI 144

[Close]

BLAST of Sed0012069 vs. TAIR 10
Match: AT3G11780.2 (MD-2-related lipid recognition domain-containing protein / ML domain-containing protein )

HSP 1 Score: 128.6 bits (322), Expect = 4.4e-30
Identity = 71/162 (43.83%), Postives = 90/162 (55.56%), Query Frame = 0


Query: 6   FNRILSLLFAVLLLFPAIFAA-KFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVSAA 65
           F    SL  +  LL   I AA    YCD    Y VKV  + ++P P+  G+PATF +SA 
Sbjct: 4   FTGFSSLAISYFLLVSTIVAATDVHYCDNNEEYEVKVQGVDITPYPIARGEPATFRISAN 63

Query: 66  TEKDLSGGKFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPP----- 125
           T+ ++S GK  +EVS FG HIHSE+HDLC+ T CPV  G F +AHSQ LP  TPP     
Sbjct: 64  TDTEISSGKLVIEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPTEKRF 123

Query: 126 -------------GTYSVKILLKDSDKHQLTCISFKLKIVFG 149
                        G+YS+K+ + D  K +LTCI F   I FG
Sbjct: 124 NLVSIAYYEFHVEGSYSLKMKMLDGRKKELTCIKFSFDIGFG 165

[Close]

BLAST of Sed0012069 vs. TAIR 10
Match: AT2G16005.1 (MD-2-related lipid recognition domain-containing protein )

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-15
Identity = 46/147 (31.29%), Postives = 71/147 (48.30%), Query Frame = 0


Query: 5   SFNRILSLLFAVLLLFPAIFAAKFDYCDRRGNYPVKVDKLLVSPDPVKSGKPATFTVSAA 64
           S  ++L LL   L   PA+   KF  CD    YP+KV  + +SPDPVK       T++  
Sbjct: 4   SHTQLLLLLLVSLFFSPALCGPKFQTCDTGKEYPLKVSSVEISPDPVKRSGNGEITITGV 63

Query: 65  TEKDLSGG---KFEVEVSLFGLHIHSESHDLCEVTLCPVKPGKFSLAHSQSLPPLTPPGT 124
           T K++S G     ++ V +F   + ++S+ LC++T CPV PG   L       P      
Sbjct: 64  TNKEISDGVTVNLKLAVGMF--PVSTKSYSLCDITACPVAPGPIVLTLPNIFTPREKRTA 123

Query: 125 YSVKILLKDSD---KHQLTCISFKLKI 146
               I++  +D   K  + CI F +K+
Sbjct: 124 IGYTIIISITDKPLKESMMCILFVVKL 148

The following BLAST results are available for this feature:

BLAST of Sed0012069 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443632.1	3.9e-68	81.37	PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein D...	[more]
XP_022933704.1	8.6e-68	81.60	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
XP_023520653.1	1.9e-67	80.98	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
KAG7022171.1	5.6e-67	80.37	putative phosphatidylglycerol/phosphatidylinositol transfer protein [Cucurbita a...	[more]
XP_022141999.1	2.1e-66	81.99	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]

BLAST of Sed0012069 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST8	4.4e-14	31.29	MD-2-related lipid-recognition protein ROSY1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q54SW1	2.0e-11	27.34	Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
Q5A8A2	6.5e-10	28.81	Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Candida albicans (...	[more]
Q4P580	9.4e-09	28.93	Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Ustilago maydis (s...	[more]
Q7RZ85	7.9e-08	27.50	Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Neurospora crassa ...	[more]

BLAST of Sed0012069 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B808	1.9e-68	81.37	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
A0A6J1F0H6	4.2e-68	81.60	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
A0A6J1CKB6	1.0e-66	81.99	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
A0A6J1KME8	1.7e-66	79.75	putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179...	[more]
A0A0A0LXM9	3.9e-66	78.88	ML domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G641040 PE=4 SV=...	[more]

BLAST of Sed0012069 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44100.1	2.4e-36	50.00	MD-2-related lipid recognition domain-containing protein	[more]
AT3G11780.1	1.9e-33	49.31	MD-2-related lipid recognition domain-containing protein / ML domain-containing ...	[more]
AT5G06480.1	1.9e-33	48.53	Immunoglobulin E-set superfamily protein	[more]
AT3G11780.2	4.4e-30	43.83	MD-2-related lipid recognition domain-containing protein / ML domain-containing ...	[more]
AT2G16005.1	3.1e-15	31.29	MD-2-related lipid recognition domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003172	MD-2-related lipid-recognition domain	SMART	SM00737	pgtp_13	coord: 28..143 e-value: 9.0E-35 score: 131.5
IPR003172	MD-2-related lipid-recognition domain	PFAM	PF02221	E1_DerP2_DerF2	coord: 27..145 e-value: 1.2E-22 score: 80.7
None	No IPR available	GENE3D	2.60.40.770		coord: 26..147 e-value: 3.2E-14 score: 55.4
None	No IPR available	PANTHER	PTHR11306:SF34	PHOSPHATIDYLGLYCEROL/PHOSPHATIDYLINOSITOL TRANSFER PROTEIN DDB_G0282179 ISOFORM X1-RELATED	coord: 1..154
IPR039670	Sterol transport protein NPC2-like	PANTHER	PTHR11306	NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED	coord: 1..154
IPR033917	ML domain, phosphatidylinositol/phosphatidylglycerol transfer protein	CDD	cd00917	PG-PI_TP	coord: 28..142 e-value: 1.92858E-38 score: 125.515
IPR014756	Immunoglobulin E-set	SUPERFAMILY	81296	E set domains	coord: 26..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012069.1	Sed0012069.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032366	intracellular sterol transport
molecular_function	GO:0032934	sterol binding