Sed0012057 (gene) Chayote v1

Overview


Name	Sed0012057
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Dynein light chain
Location	LG02: 45334972 .. 45337761 (+)
RNA-Seq Expression	Sed0012057
Synteny	Sed0012057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTCTGTGTCACAATGTGTTGATTTAACTCCTGCTAATGCAAACAAAGTTTGCTAATTTTGTTGTTTTGAAGGTAGGAGTAAAGAGAGAGGCAAACACTGAAATATCATCGTTTGGTTTTGAAGCACAGCCACCAGATTATTCTTTTCTTTTCTTTTTGTTAATCATAAAAAATACACTTCACTTGTCTGACAATTGGGCTATAAATTTGCAGAGGTTTGTGGCAGCAGGCTTTTGCAGGCTGGTTGGTACAGAGAAAAAAGCCAAGTGGTCATCAGTTTTTGAAGATGTTGGAGGGTAAAGCTGTGGTCCGCGAAACAGACATGCCAGAGGGGATCCAGGGCCATGTCCTTCAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTGTCAATCCATTGCATGTTTCATCAAACAGGTTTATTTTCTTAAACCTTCAGATTCTACGCCTCGTTTGGTAATCATTTGCGCCCGTTTGATAACCATTTTCTTTTTAGTTTTTAGTTTTTGAAATCTAAGCCTACAACAACTACATTACTATATATTTTTTCTCACTTGGATATTTACATCTTACCTATATTTTTATAAACTAATCCAAAATTTGGAAACAAAAAAAAAAGTATGCTACCAAAAGTTATTTTTGTTTTTGAAATTTGGTTAGCATTCACATACTCTCTTTAGAAAATATAGATACAATATAGGAAATATGGTATACATTGTAGAAAATTTGAGTAAAAAACGCTTAAGTTTTTTTGTTATCAAATGGGGTCTTGGCTTTTTGTTTTTGGTTGCGTTCCATATGTGAATGCAAACAAAAAAATTTAAAAACCAAAACAAGTTTTCGGCTTCTTTTTTTGTTTTCAAAGTTTGGTTTGGTTTTTGAAAATATAGGTAAGATGTAGATATTCGTAAGTAAGAAAAACATATGTGAAGTAGTTATTGTGGGCTTAAATTTCAAAAAACAAAAATATTATCAAACGGGGTTTTAATGATCTAAATTTTAATTTTACTTAATGAAAAATATCCCCTTTTCTCCTTTTCTTTCAAAAAAGGAAGACAAGTCCTTTCGTTGCATTAATAGATTGAAAAGATTCATTTTTGTAACCTGTAAAAGTTGTTGAGACCCTTTAATGATATAAAGAAGATATGCTTCATTATTCGCAGTAACCACATCAATTAACAAAGACAAAGTTACCTTTTCCTGTTAAAATATTCGAGTGTGTGTCATTTTCATACTATAAAGTATAAATTTCTACACACACAAACATAGATGATCTATGTTCACGTCATCTACCATCTGATCTGATCTGATCTGATGAGACTAAATCTGGAATATACTTTGTGTGGTTGATGTTTGAATCAACTTGTCTGAAGAGTAAATGAATGAAACCACTCAGAAGTTCCCATGTTCATCATTTCTTTCTTTTTGCTGCTTCATGAGAAAAAGCTGCTCGATATCAAATTATATAGCAGCATTGCATTTTGGACCAACCCGTGACATGTTAATGAAAGATTACAAAATATTGTATGCTGTTGAGATCCTAATAGGTTCGTTACTCTTCTCATCGCCAATTGGTTTTGAGATGGATGGTCAGATAGTATATAATCCATTAAACTCAAACGGGTATTTGGTTCAATAAAAAGAAAGAGGCATCATCTTACAGGCCATGTTGACCTCATAGCATCTACTTTTCTCATCACCGATTGGTTTTGAGATTGACGCTTATACTAATCTAATATCTGTAATTAACTGCTCACTAATATGACTGAGCTTTTGATGATTAGAGGTTTGACGAAGTTTATGGCCCATCATGGCATTGTGTGGTGGGCAAAGCCTTTGGAGGTTGCATTACACATTTATGTGGTAGTTTCATCTCTTTCCATGTGGATACAATGGAGTTTCTGGTCTTCAAGGATGGAAGAGATTGCTCGAAAAGCGTTGAAGAAAGTGCTGGAGTTCGCCGCCACGAAAGTTAAGTAGAGACCGAGTATAATGGGGTTACATACTACAGCCTTCTTGATTTGATTGTGAGTGTTAGCATTTCTATTATGTTGTTTTAATGTTCTAAGACTGTATTGATATCCAATCGTGTCGTAGCTCGAATGAGAGGTTGATATGAAAACAGAAAACCAAAATCAAAACAACAATGGTACAGTGTGTGATAATCCAATATCTTTAGATACAAACACTTATTCCATCAGTTCTGTTAGATCTTACTTTACAAAGAAAGCTTACATGTGTTTGGTGTCTTAATCTTGCAGCATGTGACAGAAAAATCATCACCGCACCATGTTCAAAACATGAAGCCTTGTGAGAACATAACATAAAAATAAAAACAGAAGGAAAAGAGCAAGAAACCTTGCAGGAGAGTGCCAAAATGAGCACAGCACAATCGGCATCTCGTAACAACGACCTCGGAATTAGAGGTTCGATCTCCCATCCTGCATATTATCAACAAAAAAAAAAAAAAAAAAACCTTGTAGGACATTTGATAACCTGCTAGTCAATTCCAGCATTGTTAGTAAGGAAGAGGTAATCTGCAACCCGAGATCTAGAAAAGAAGACATTTTTTATTTATTTATTTCTACTTTTCTGATCTAAACCTCAGGATGCAGATTACCCTATCCTTACCCAACAAAAATCATAAAAATTTAAAAAAGGTAGAGAAAGTAGAAAGTTTTGACTGAGGAAGAAGCTTTGGTTTTAGAAAGAGCTGAAGTTCATATGGTAAATTCATCAGTATTTATAATGGGTTTTGAAGCCCAAAAATATATTCCAAAG

mRNA sequence

TATTTCTGTGTCACAATGTGTTGATTTAACTCCTGCTAATGCAAACAAAGTTTGCTAATTTTGTTGTTTTGAAGGTAGGAGTAAAGAGAGAGGCAAACACTGAAATATCATCGTTTGGTTTTGAAGCACAGCCACCAGATTATTCTTTTCTTTTCTTTTTGTTAATCATAAAAAATACACTTCACTTGTCTGACAATTGGGCTATAAATTTGCAGAGGTTTGTGGCAGCAGGCTTTTGCAGGCTGGTTGGTACAGAGAAAAAAGCCAAGTGGTCATCAGTTTTTGAAGATGTTGGAGGGTAAAGCTGTGGTCCGCGAAACAGACATGCCAGAGGGGATCCAGGGCCATGTCCTTCAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTGTCAATCCATTGCATGTTTCATCAAACAGAGGTTTGACGAAGTTTATGGCCCATCATGGCATTGTGTGGTGGGCAAAGCCTTTGGAGGTTGCATTACACATTTATGTGGTAGTTTCATCTCTTTCCATGTGGATACAATGGAGTTTCTGGTCTTCAAGGATGGAAGAGATTGCTCGAAAAGCGTTGAAGAAAGTGCTGGAGTTCGCCGCCACGAAAGTTAAGTAGAGACCGAGTATAATGGGGTTACATACTACAGCCTTCTTGATTTGATTGTGAGTGTTAGCATTTCTATTATGTTGTTTTAATGTTCTAAGACTGTATTGATATCCAATCGTGTCGTAGCTCGAATGAGAGGTTGATATGAAAACAGAAAACCAAAATCAAAACAACAATGGTACAGTGTGTGATAATCCAATATCTTTAGATACAAACACTTATTCCATCAGTTCTGTTAGATCTTACTTTACAAAGAAAGCTTACATGTGTTTGGTGTCTTAATCTTGCAGCATGTGACAGAAAAATCATCACCGCACCATGTTCAAAACATGAAGCCTTGTGAGAACATAACATAAAAATAAAAACAGAAGGAAAAGAGCAAGAAACCTTGCAGGAGAGTGCCAAAATGAGCACAGCACAATCGGCATCTCGTAACAACGACCTCGGAATTAGAGGTTCGATCTCCCATCCTGCATATTATCAACAAAAAAAAAAAAAAAAAAACCTTGTAGGACATTTGATAACCTGCTAGTCAATTCCAGCATTGTTAGTAAGGAAGAGGTAATCTGCAACCCGAGATCTAGAAAAGAAGACATTTTTTATTTATTTATTTCTACTTTTCTGATCTAAACCTCAGGATGCAGATTACCCTATCCTTACCCAACAAAAATCATAAAAATTTAAAAAAGGTAGAGAAAGTAGAAAGTTTTGACTGAGGAAGAAGCTTTGGTTTTAGAAAGAGCTGAAGTTCATATGGTAAATTCATCAGTATTTATAATGGGTTTTGAAGCCCAAAAATATATTCCAAAG

Coding sequence (CDS)

ATGTTGGAGGGTAAAGCTGTGGTCCGCGAAACAGACATGCCAGAGGGGATCCAGGGCCATGTCCTTCAGTTGGCTTATAAAGCACTTGATCAACACGAAGTTTCCGACTGTCAATCCATTGCATGTTTCATCAAACAGAGGTTTGACGAAGTTTATGGCCCATCATGGCATTGTGTGGTGGGCAAAGCCTTTGGAGGTTGCATTACACATTTATGTGGTAGTTTCATCTCTTTCCATGTGGATACAATGGAGTTTCTGGTCTTCAAGGATGGAAGAGATTGCTCGAAAAGCGTTGAAGAAAGTGCTGGAGTTCGCCGCCACGAAAGTTAA

Protein sequence

MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEESAGVRRHES

Homology

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BLAST of Sed0012057 vs. NCBI nr
Match: XP_008442502.1 (PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo])

HSP 1 Score: 204.9 bits (520), Expect = 3.5e-49
Identity = 95/106 (89.62%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
           MLEGKAVVRETDMP+GIQ HVL+LAYKALDQHEVSDCQSIA FIKQRFDE YGP+WHCV 
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEESAGVRR 107
           GKAFGGCITHLCGSFI FHVDTMEFLVFKDGRDCSKSVEE+ GV R
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCR 106

[Close]

BLAST of Sed0012057 vs. NCBI nr
Match: KGN58830.1 (hypothetical protein Csa_001625 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 3.9e-48
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
           MLEGKAVVRETDMP+GIQ HVL+LAYKALDQHEVSDCQSIA FIKQRFDE YGP+WHCV 
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEESAGVRR 107
           GKAFGGCITHLCGS+I FHVDTMEFLVFKDGRDC KSVEE+ GV R
Sbjct: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCR 106

[Close]

BLAST of Sed0012057 vs. NCBI nr
Match: XP_022145583.1 (dynein light chain-like [Momordica charantia])

HSP 1 Score: 198.0 bits (502), Expect = 4.3e-47
Identity = 91/106 (85.85%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
           MLEGKA VRETDMPEGIQ HVL+LAYKALD HEVSDCQSIA FIKQRFDE YGP+WHCVV
Sbjct: 1   MLEGKAAVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEESAGVRR 107
           GKAFGGCITHLCGSFI FHVD MEFL+FKDGRD SKS+EE+ GVR+
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEETLGVRQ 106

[Close]

BLAST of Sed0012057 vs. NCBI nr
Match: KAG7027933.1 (putative receptor protein kinase ZmPK1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.8 bits (447), Expect = 1.0e-40
Identity = 83/109 (76.15%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
           MLEGKAVVRETDM E IQGH L LAYKALDQHEVSD QSIA FIKQR DE YGP+W CVV
Sbjct: 808 MLEGKAVVRETDMAEVIQGHGLALAYKALDQHEVSDSQSIARFIKQRLDEAYGPAWQCVV 867

Query: 61  GKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEESAGVRRHES 110
           GKAFGGCITH+CG+FISFHVDTMEFL+FKD  DC K+V+ + G   H++
Sbjct: 868 GKAFGGCITHVCGTFISFHVDTMEFLIFKDATDCFKTVQHTLGGLPHKA 916

[Close]

BLAST of Sed0012057 vs. NCBI nr
Match: KAA8518956.1 (hypothetical protein F0562_016270 [Nyssa sinensis])

HSP 1 Score: 174.5 bits (441), Expect = 5.1e-40
Identity = 79/108 (73.15%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
           MLEGKAV+RETDMPE +Q HV++LAY+ALD HE SDCQSIA +IKQ+FDE YGP+WHCVV
Sbjct: 1   MLEGKAVLRETDMPEALQSHVMELAYQALDLHEASDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEESAGVRRHE 109
           GK FG CITHLCGSFI F VD MEFLVFKDG+D ++S EE+ GV + E
Sbjct: 61  GKDFGSCITHLCGSFIFFRVDMMEFLVFKDGKDLTESKEEAIGVLQKE 108

[Close]

BLAST of Sed0012057 vs. ExPASy Swiss-Prot
Match: Q94758 (Dynein light chain OS=Schistosoma mansoni OX=6183 GN=DLC PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.0e-16
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
          M E KAV++  DM E +Q   + +A  A+D+H++   + IA  IK+ FD  Y P+WHC+V
Sbjct: 1  MSERKAVIKNADMSEEMQEDAIHIAAGAIDKHDLE--KDIAANIKKDFDRKYHPTWHCIV 60

Query: 61 GKAFGGCITHLCGSFISFHVDTMEFLVFKDG 92
          G+ FG  +TH   +FI F++D   FL+FK G
Sbjct: 61 GRHFGSYVTHETHNFIYFYLDDRAFLLFKSG 89

[Close]

BLAST of Sed0012057 vs. ExPASy Swiss-Prot
Match: Q94748 (Probable dynein light chain OS=Schistosoma mansoni OX=6183 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-15
Identity = 39/91 (42.86%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
          M E KAV++  DM E +Q   +  A  ALD++E+   + +A +IK+ FD  Y P+WHC+V
Sbjct: 1  MGERKAVIKNADMHEDMQETAVHTAAAALDKYEIE--KDVAAYIKKEFDRKYNPNWHCIV 60

Query: 61 GKAFGGCITHLCGSFISFHVDTMEFLVFKDG 92
          GK FG  +TH    FI F++    FL+FK G
Sbjct: 61 GKHFGSYVTHETQHFIYFYLQERAFLLFKSG 89

[Close]

BLAST of Sed0012057 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.5e-15
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
          M E KAV++  DMPE +Q   +  A +AL++  +   + IA +IK+ FD+ Y P+WHC+V
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGSFISFHVDTMEFLVFKDG 92
          G+ FG  +TH    FI F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAVLLFKSG 89

[Close]

BLAST of Sed0012057 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-14
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
          M + KAV++  DM E +Q   +  A +AL+++ +   + IA FIK+ FD+ Y P+WHC+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAFIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGSFISFHVDTMEFLVFKDG 92
          G+ FG  +TH    FI F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Sed0012057 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-14
Identity = 34/91 (37.36%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
          M++ KAV++  DM + +Q   +  A +AL+++ +   + IA +IK+ FD+ Y P+WHC+V
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60

Query: 61 GKAFGGCITHLCGSFISFHVDTMEFLVFKDG 92
          G+ FG  +TH    FI F++  +  L+FK G
Sbjct: 61 GRNFGSYVTHETKHFIYFYLGQVAILLFKSG 89

[Close]

BLAST of Sed0012057 vs. ExPASy TrEMBL
Match: A0A1S3B5U2 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103486353 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-49
Identity = 95/106 (89.62%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
           MLEGKAVVRETDMP+GIQ HVL+LAYKALDQHEVSDCQSIA FIKQRFDE YGP+WHCV 
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEESAGVRR 107
           GKAFGGCITHLCGSFI FHVDTMEFLVFKDGRDCSKSVEE+ GV R
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDTMEFLVFKDGRDCSKSVEETVGVCR 106

[Close]

BLAST of Sed0012057 vs. ExPASy TrEMBL
Match: A0A0A0LA26 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G733350 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 93/106 (87.74%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
           MLEGKAVVRETDMP+GIQ HVL+LAYKALDQHEVSDCQSIA FIKQRFDE YGP+WHCV 
Sbjct: 1   MLEGKAVVRETDMPQGIQSHVLELAYKALDQHEVSDCQSIAHFIKQRFDEAYGPAWHCVA 60

Query: 61  GKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEESAGVRR 107
           GKAFGGCITHLCGS+I FHVDTMEFLVFKDGRDC KSVEE+ GV R
Sbjct: 61  GKAFGGCITHLCGSYIFFHVDTMEFLVFKDGRDCFKSVEETVGVCR 106

[Close]

BLAST of Sed0012057 vs. ExPASy TrEMBL
Match: A0A6J1CWC6 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015000 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.1e-47
Identity = 91/106 (85.85%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
           MLEGKA VRETDMPEGIQ HVL+LAYKALD HEVSDCQSIA FIKQRFDE YGP+WHCVV
Sbjct: 1   MLEGKAAVRETDMPEGIQSHVLELAYKALDHHEVSDCQSIARFIKQRFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEESAGVRR 107
           GKAFGGCITHLCGSFI FHVD MEFL+FKDGRD SKS+EE+ GVR+
Sbjct: 61  GKAFGGCITHLCGSFIFFHVDIMEFLIFKDGRDFSKSIEETLGVRQ 106

[Close]

BLAST of Sed0012057 vs. ExPASy TrEMBL
Match: A0A5J4ZMN8 (Dynein light chain OS=Nyssa sinensis OX=561372 GN=F0562_016270 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 79/108 (73.15%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
           MLEGKAV+RETDMPE +Q HV++LAY+ALD HE SDCQSIA +IKQ+FDE YGP+WHCVV
Sbjct: 1   MLEGKAVLRETDMPEALQSHVMELAYQALDLHEASDCQSIAHYIKQKFDEAYGPAWHCVV 60

Query: 61  GKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEESAGVRRHE 109
           GK FG CITHLCGSFI F VD MEFLVFKDG+D ++S EE+ GV + E
Sbjct: 61  GKDFGSCITHLCGSFIFFRVDMMEFLVFKDGKDLTESKEEAIGVLQKE 108

[Close]

BLAST of Sed0012057 vs. ExPASy TrEMBL
Match: A0A2P5EZ32 (Dynein light chain OS=Trema orientale OX=63057 GN=TorRG33x02_134280 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.2e-40
Identity = 77/104 (74.04%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
           MLEGKAVVRETDMPE +Q HV++LAYKALD HEVSDCQSIA +IKQ+FDE YGP+W+CVV
Sbjct: 1   MLEGKAVVRETDMPEAMQSHVMELAYKALDLHEVSDCQSIANYIKQKFDEEYGPAWNCVV 60

Query: 61  GKAFGGCITHLCGSFISFHVDTMEFLVFKDGRDCSKSVEESAGV 105
           GK FG CITHLCGSFI FHV+ MEFL+FKDG+D +++++E+ GV
Sbjct: 61  GKDFGSCITHLCGSFIFFHVEMMEFLIFKDGKDFNETMDEAIGV 104

[Close]

BLAST of Sed0012057 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 97.4 bits (241), Expect = 7.3e-21
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
          MLEGKA+V ++DMP  +Q   +  A +ALD  +V DC+SIA  IK+ FDE YG  W CVV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GKAFGGCITHLCGSFISFHVDTMEFLVFK 90
          G  FG   TH  G+FI F ++T++FL+FK
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFK 89

[Close]

BLAST of Sed0012057 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-20
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
          MLEGKA V ETDMP  +Q   +++A ++LD  +V D  SIA  IK+ FDE YG  W CVV
Sbjct: 1  MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query: 61 GKAFGGCITHLCGSFISFHVDTMEFLVFK 90
          G  FG   TH  G+FI FH+ T+ FL+FK
Sbjct: 61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFK 89

[Close]

BLAST of Sed0012057 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-18
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 1  MLEGKAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVV 60
          MLEGKAV+ +TDM + ++   L LA KALD  +V++   IA FIK+ FD  YG  W C+V
Sbjct: 1  MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query: 61 GKAFGGCITHLCGSFISFHVDTMEFLVFK 90
          G  FG  +TH  G FI F V ++  L+FK
Sbjct: 61 GTHFGSFVTHCSGCFIHFSVGSLTILLFK 89

[Close]

BLAST of Sed0012057 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 74.7 bits (182), Expect = 5.1e-14
Identity = 33/78 (42.31%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 12  DMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAFGGCITHL 71
           DMP  +Q H  + A   LD  E    + +A  +K+ FD+ YGP+WHC+VG +FG  +TH 
Sbjct: 123 DMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 182

Query: 72  CGSFISFHVDTMEFLVFK 90
            G FI F +D +  L+FK
Sbjct: 183 TGCFIYFSMDKLYVLLFK 200

[Close]

BLAST of Sed0012057 vs. TAIR 10
Match: AT4G15930.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-13
Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 5   KAVVRETDMPEGIQGHVLQLAYKALDQHEVSDCQSIACFIKQRFDEVYGPSWHCVVGKAF 64
           +AV++  DM + +Q   +++A  A +++ V   + IA  IK+ FD+ +G +WHC+VG+ F
Sbjct: 39  RAVIKSADMKDDMQKEAIEIAISAFEKYSVE--KDIAENIKKEFDKKHGATWHCIVGRNF 98

Query: 65  GGCITHLCGSFISFHVDTMEFLVFKDG 92
           G  +TH    F+ F++D    L+FK G
Sbjct: 99  GSYVTHETNHFVYFYLDQKAVLLFKSG 123

The following BLAST results are available for this feature:

BLAST of Sed0012057 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442502.1	3.5e-49	89.62	PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis melo]	[more]
KGN58830.1	3.9e-48	87.74	hypothetical protein Csa_001625 [Cucumis sativus]	[more]
XP_022145583.1	4.3e-47	85.85	dynein light chain-like [Momordica charantia]	[more]
KAG7027933.1	1.0e-40	76.15	putative receptor protein kinase ZmPK1, partial [Cucurbita argyrosperma subsp. a...	[more]
KAA8518956.1	5.1e-40	73.15	hypothetical protein F0562_016270 [Nyssa sinensis]	[more]

BLAST of Sed0012057 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94758	9.0e-16	42.86	Dynein light chain OS=Schistosoma mansoni OX=6183 GN=DLC PE=1 SV=1	[more]
Q94748	1.2e-15	42.86	Probable dynein light chain OS=Schistosoma mansoni OX=6183 PE=3 SV=1	[more]
O02414	4.5e-15	40.66	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
O96860	1.7e-14	39.56	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]
Q22799	2.2e-14	37.36	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]

BLAST of Sed0012057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B5U2	1.7e-49	89.62	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103486353 PE=3 SV=1	[more]
A0A0A0LA26	1.9e-48	87.74	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G733350 PE=3 SV=1	[more]
A0A6J1CWC6	2.1e-47	85.85	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015000 PE=3 SV=1	[more]
A0A5J4ZMN8	2.5e-40	73.15	Dynein light chain OS=Nyssa sinensis OX=561372 GN=F0562_016270 PE=3 SV=1	[more]
A0A2P5EZ32	4.2e-40	74.04	Dynein light chain OS=Trema orientale OX=63057 GN=TorRG33x02_134280 PE=3 SV=1	[more]

BLAST of Sed0012057 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52240.2	7.3e-21	51.69	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	1.6e-20	52.81	Dynein light chain type 1 family protein	[more]
AT4G27360.1	2.0e-18	48.31	Dynein light chain type 1 family protein	[more]
AT5G20110.1	5.1e-14	42.31	Dynein light chain type 1 family protein	[more]
AT4G15930.1	1.9e-13	35.63	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 1..90 e-value: 3.6E-36 score: 136.1
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 5..89 e-value: 1.9E-28 score: 98.6
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..104
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 2..90 e-value: 4.2E-29 score: 102.4
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 1..90
None	No IPR available	PANTHER	PTHR11886:SF85	DYNEIN LIGHT CHAIN	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012057.1	Sed0012057.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding