Sed0012038 (gene) Chayote v1

Overview


Name	Sed0012038
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Reverse transcriptase
Location	LG12: 18210636 .. 18211800 (-)
RNA-Seq Expression	Sed0012038
Synteny	Sed0012038

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCGAGTTTGTCACCGGTGTCTCACTTGTCGCCAAGTGAAGGCACTCGAGCAGAGGCCACCGGTTTGTTGCACCGTGCCGAGTGTGCCTCAGTGGAAATGGGAAGAGATCTCCATGGACTTTATTGCTGGTTTGCCAAGGACTCCGAGGAAGTTCACTCAGATCTGGGTGATAGTCGATCGGTTGACCAAGAGCGCACACTTCATTCCCGGTAGAGACACTTATACCGTGGAACAAAGGCGCAGCTTGTTTTTGGAGCGAGATCATTCGTTACCATGGTGTGCCTGTGAGGATTGTGTCGCATCGTGATTCGCGGTTCACTTCTCGATTCTCGAGGGCGCTCCGAAAGGTTTAGGCACCGAGTGCGATTTCAAAGATGACTTTTCACCCTCGCATGGATGGGCAGGTCGAGAGGGTGAACCAGATTCTCGAGGATATGTTGAGGGCTTGTGTGTTGGACTTCCCGGGCGCTTGGGACCAAGATTCAGATCGATGGAGTTTGCCTATAACAACGATTATCGATCGACGATTCGATGGCTCCATTCGAGGCCTTGTACGGCAAGCGTTGTCGGTCCCCGTGTTCGGGAAGAGGTTGGTGATAGGCGAGTTTTGGGTCCCGAGTTGCTGCGAGCTTGACTAATGGAGCGAAGCAAAAGATTAGAGCTCGCATGTTGACGGCTCGAGCGTGTGCGAGAAAAGTTACGCCATTGTTCGCGCCGAGATTTGGAGTTTGAGGTTGGCCAAAGATGTGTTCCTAAAGGTTGCTCCAATGCGTGGTGTTTTGAGGTTTGGTAAGCGAGGAAGTTGAGTCCCCGCTTTGTCGGGCCGTTTGAGATTCTCGGAAAGGATTGGCGAGTTGCTTATCTGTTAGCCCTACCTCCGTCGTTGTCGCAGAAAGGTGCATAGTGTTTTTCATGTATCGATGTTGAGGCAGTATGTACCGGACCCGTCGCACATTGTGGACTTTGAGCCTTTGCAACTAAATGAGGATTTGAGCTTCGAGGAGAAGCCAGTGGGGATCCTTGCATTTGAGACGAAGACGTTGCGTAACCGCGAGATTCGGTTGGTAAAGGTTCAGTGGAGGAGTCAGAGTTCCGAGGAAGCCACTTGGGAGCGGGAAGACGAGATGAGATTGCATCATCCTGAGCTGTTCCAGTCTTAA

mRNA sequence

ATGTGGCGAGTTTGTCACCGGTGTCTCACTTGTCGCCAAGTGAAGGCACTCGAGCAGAGGCCACCGGTTTGTTGCACCGTGCCGAGTGTGCCTCAGTGGAAATGGGAAGAGATCTCCATGGACTTTATTGCTGGTTTGCCAAGGACTCCGAGGAAGTTCACTCAGATCTGGGTGATAGTCGATCGGTTGACCAAGAGCGCACACTTCATTCCCGAGACACTTATACCGTGGAACAAAGGCGCAGCTTGTTTTTGGAGCGAGATCATTCGTTACCATGGTGTGCCTGTGAGGATTGTGTCGCATCGTGATTCGCGGTTCACTTCTCGATTCTCGAGGGCGCTCCGAAAGGTCGAGAGGGTGAACCAGATTCTCGAGGATATGTTGAGGGCTTGTGTGTTGGACTTCCCGGGCGCTTGGGACCAAGATTCAGATCGATGGAGTTTGCCTATAACAACGATTATCGATCGACGATTCGATGGCTCCATTCGAGGCCTTGTACGGCAAGCGTTGTCGGTCCCCGTGTTCGGGAAGAGAAAGGTGCATAGTGTTTTTCATGTATCGATGTTGAGGCAGTATGTACCGGACCCGTCGCACATTGTGGACTTTGAGCCTTTGCAACTAAATGAGGATTTGAGCTTCGAGGAGAAGCCAGTGGGGATCCTTGCATTTGAGACGAAGACGTTGCGTAACCGCGAGATTCGGTTGGTAAAGGTTCAGTGGAGGAGTCAGAGTTCCGAGGAAGCCACTTGGGAGCGGGAAGACGAGATGAGATTGCATCATCCTGAGCTGTTCCAGTCTTAA

Coding sequence (CDS)

ATGTGGCGAGTTTGTCACCGGTGTCTCACTTGTCGCCAAGTGAAGGCACTCGAGCAGAGGCCACCGGTTTGTTGCACCGTGCCGAGTGTGCCTCAGTGGAAATGGGAAGAGATCTCCATGGACTTTATTGCTGGTTTGCCAAGGACTCCGAGGAAGTTCACTCAGATCTGGGTGATAGTCGATCGGTTGACCAAGAGCGCACACTTCATTCCCGAGACACTTATACCGTGGAACAAAGGCGCAGCTTGTTTTTGGAGCGAGATCATTCGTTACCATGGTGTGCCTGTGAGGATTGTGTCGCATCGTGATTCGCGGTTCACTTCTCGATTCTCGAGGGCGCTCCGAAAGGTCGAGAGGGTGAACCAGATTCTCGAGGATATGTTGAGGGCTTGTGTGTTGGACTTCCCGGGCGCTTGGGACCAAGATTCAGATCGATGGAGTTTGCCTATAACAACGATTATCGATCGACGATTCGATGGCTCCATTCGAGGCCTTGTACGGCAAGCGTTGTCGGTCCCCGTGTTCGGGAAGAGAAAGGTGCATAGTGTTTTTCATGTATCGATGTTGAGGCAGTATGTACCGGACCCGTCGCACATTGTGGACTTTGAGCCTTTGCAACTAAATGAGGATTTGAGCTTCGAGGAGAAGCCAGTGGGGATCCTTGCATTTGAGACGAAGACGTTGCGTAACCGCGAGATTCGGTTGGTAAAGGTTCAGTGGAGGAGTCAGAGTTCCGAGGAAGCCACTTGGGAGCGGGAAGACGAGATGAGATTGCATCATCCTGAGCTGTTCCAGTCTTAA

Protein sequence

MWRVCHRCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSAHFIPETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALRKVERVNQILEDMLRACVLDFPGAWDQDSDRWSLPITTIIDRRFDGSIRGLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGILAFETKTLRNREIRLVKVQWRSQSSEEATWEREDEMRLHHPELFQS

Homology

[Close]

BLAST of Sed0012038 vs. NCBI nr
Match: KAA0053631.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-65
Identity = 150/350 (42.86%), Postives = 194/350 (55.43%), Query Frame = 0


Query: 7   RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKS 66
           +CL C+QVKA  Q+P       S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTKS
Sbjct: 31  KCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKS 90

Query: 67  AHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALR---------- 126
           AHF+P ++    +K A  + SEI+R HGVPV IVS RD+RFTS+F + L+          
Sbjct: 91  AHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFS 150

Query: 127 ---------KVERVNQILEDMLRACVLDFPGAWD-------------------------- 186
                    + ER+NQ+LEDMLRAC L+FPG+WD                          
Sbjct: 151 TAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEAL 210

Query: 187 -----------------------------QDSDRWSLPITTI-----------IDRRFDG 246
                                        +  D+  L +  +           +  RF G
Sbjct: 211 YDKCCRSPVCWGESRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVG 270

Query: 247 SIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE 266
                   G V   L++P      VH VFHVSMLR+YVPDPSH+VD+EPL+++E+LS+ E
Sbjct: 271 PFEILERIGPVAYRLALPP-SLSTVHEVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVE 330

[Close]

BLAST of Sed0012038 vs. NCBI nr
Match: KAA0040695.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 3.8e-65
Identity = 149/344 (43.31%), Postives = 192/344 (55.81%), Query Frame = 0


Query: 7    RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKS 66
            RCL C+QVKA  Q+P       S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTK 
Sbjct: 1209 RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKL 1268

Query: 67   AHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALR---------- 126
            AHF+P ++    +K A  + SEI+R HGVPV IVS+RD+RFTS+F + L+          
Sbjct: 1269 AHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSNRDARFTSKFWKGLQTAMGTRLDFS 1328

Query: 127  ---------KVERVNQILEDMLRACVLDFPGAWD-------------------------- 186
                     + ER+NQ+LEDMLRAC L+FPG+WD                          
Sbjct: 1329 TAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEAL 1388

Query: 187  -----------------------QDSDRWSLPITTI-----------IDRRFDGSIR--- 246
                                   +  D+  L +  +           +  RF G      
Sbjct: 1389 YGKCCRSPVCWGEVDVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILE 1448

Query: 247  --GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGIL 266
              G V   L +P      VH V HVSMLR+YVPDPSH+VD+EPL+++E+LS+ E+PV +L
Sbjct: 1449 RIGPVAYRLVLPP-SLSTVHDVIHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVEVL 1508

[Close]

BLAST of Sed0012038 vs. NCBI nr
Match: TYK01415.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.8 bits (647), Expect = 1.6e-63
Identity = 147/350 (42.00%), Postives = 191/350 (54.57%), Query Frame = 0


Query: 7    RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKS 66
            +CL C+QVKA  Q+P       S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTKS
Sbjct: 878  KCLVCQQVKAPRQKPAGLLQSLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKS 937

Query: 67   AHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALR---------- 126
            AHF+P ++    +K A  + SEI+R HGVPV I+S RD+RFTS+F + L+          
Sbjct: 938  AHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSILSDRDARFTSKFWKGLQTAMGMRLDFS 997

Query: 127  ---------KVERVNQILEDMLRACVLDFPGAWDQD------------------------ 186
                     + ER+NQ+LEDMLRAC L+F G+WD                          
Sbjct: 998  TAFHPQTDGQTERLNQVLEDMLRACALEFLGSWDSHLHLMEFAYNNSFQATIGMAQFEAL 1057

Query: 187  -------------------------------SDRWSLPITTI-----------IDRRFDG 246
                                            D+  L +  +           +  RF G
Sbjct: 1058 YDKCCRSPVCWAESRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVG 1117

Query: 247  SIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE 266
                    G V   L++P      VH VFHVSMLR+YVPDPSH+VD+EPL+++E+LS+ E
Sbjct: 1118 PFEILERIGPVAYRLALPQ-SLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTE 1177

[Close]

BLAST of Sed0012038 vs. NCBI nr
Match: KAA0051051.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 2.7e-63
Identity = 146/339 (43.07%), Postives = 190/339 (56.05%), Query Frame = 0


Query: 7    RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKS 66
            RCL C+QVKA  Q+P       S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTKS
Sbjct: 1216 RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKS 1275

Query: 67   AHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALR---------- 126
            AHF+P ++    +K A  + SEI+R HGVP+ IVS RD+ FTS+F + L+          
Sbjct: 1276 AHFVPGKSTYTASKWAELYMSEIVRLHGVPLSIVSDRDACFTSKFWKRLQTAMGTRLDFS 1335

Query: 127  ---------KVERVNQILEDMLRACVLDFPGAWDQD------------------------ 186
                     + ER+NQ+LEDMLRAC L+FPG   +                         
Sbjct: 1336 TAFHPQTDGQTERLNQVLEDMLRACALEFPGEVGEQRLMGPELVQSTNEAIQKIRSRMHT 1395

Query: 187  --------------------SDRWSLPITTI-----------IDRRFDGSIR-----GLV 246
                                 D+  L +  +           +  RF G        G V
Sbjct: 1396 AQSRQKSYADGRRKDLEFEIGDKVFLKVAPVRGVLRFERRGKLSPRFVGPFEILERIGPV 1455

Query: 247  RQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGILAFETK 266
               L++P      VH VFHVSMLR+YVPDPSH+VD+EPL+++E+LS+ E+PV +LA E K
Sbjct: 1456 AYRLALPP-SLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVK 1515

[Close]

BLAST of Sed0012038 vs. NCBI nr
Match: KAA0035480.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 251.5 bits (641), Expect = 8.0e-63
Identity = 147/343 (42.86%), Postives = 188/343 (54.81%), Query Frame = 0


Query: 7    RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKS 66
            RCL C+QVKAL Q+P       SVP+WKWE +SMDFI GLPRT R FT IWV+VDRLTKS
Sbjct: 1119 RCLVCQQVKALRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKS 1178

Query: 67   AHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALR---------- 126
            AHF+P ++    +K A  + SEI+R HGVPV IVS RD+RFTS+F + L+          
Sbjct: 1179 AHFVPGKSTYAASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFS 1238

Query: 127  ---------KVERVNQILEDMLRACVLDFPGAWD-------------------------- 186
                     + ER+NQ+LEDMLRAC L+FPG+WD                          
Sbjct: 1239 TAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDYHLHLMEFAYNNSYQATIGMAPFEAL 1298

Query: 187  -----------------------------QDSDRWSLPITTI-----------IDRRFDG 246
                                         +  D+  L +  +           +  RF G
Sbjct: 1299 YGKCCRSPVYWGESRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVG 1358

Query: 247  SIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE 259
                    G V   L++P      VH VFHVSMLR+YV DPSH+VD+EPL+++E+LS+ E
Sbjct: 1359 PFEILERIGPVAYRLALPP-SLSTVHDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSYTE 1418

[Close]

BLAST of Sed0012038 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 37/110 (33.64%), Postives = 53/110 (48.18%), Query Frame = 0


Query: 8    CLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSA 67
            C+ C+ +K+   R         + + +W +ISMDF+ GLP T      I V+VDR +K A
Sbjct: 1142 CVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRA 1201

Query: 68   HFI-PETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALRK 117
            HFI     +   +     +  I  YHG P  I S RD R T+   + L K
Sbjct: 1202 HFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTK 1251

[Close]

BLAST of Sed0012038 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-09
Identity = 37/110 (33.64%), Postives = 53/110 (48.18%), Query Frame = 0


Query: 8    CLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKSA 67
            C+ C+ +K+   R         + + +W +ISMDF+ GLP T      I V+VDR +K A
Sbjct: 1168 CVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRA 1227

Query: 68   HFI-PETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALRK 117
            HFI     +   +     +  I  YHG P  I S RD R T+   + L K
Sbjct: 1228 HFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTK 1277

[Close]

BLAST of Sed0012038 vs. ExPASy TrEMBL
Match: A0A5A7UJG5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold31080G00010 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 6.4e-66
Identity = 150/350 (42.86%), Postives = 194/350 (55.43%), Query Frame = 0


Query: 7   RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKS 66
           +CL C+QVKA  Q+P       S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTKS
Sbjct: 31  KCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKS 90

Query: 67  AHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALR---------- 126
           AHF+P ++    +K A  + SEI+R HGVPV IVS RD+RFTS+F + L+          
Sbjct: 91  AHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFS 150

Query: 127 ---------KVERVNQILEDMLRACVLDFPGAWD-------------------------- 186
                    + ER+NQ+LEDMLRAC L+FPG+WD                          
Sbjct: 151 TAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEAL 210

Query: 187 -----------------------------QDSDRWSLPITTI-----------IDRRFDG 246
                                        +  D+  L +  +           +  RF G
Sbjct: 211 YDKCCRSPVCWGESRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVG 270

Query: 247 SIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE 266
                   G V   L++P      VH VFHVSMLR+YVPDPSH+VD+EPL+++E+LS+ E
Sbjct: 271 PFEILERIGPVAYRLALPP-SLSTVHEVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVE 330

[Close]

BLAST of Sed0012038 vs. ExPASy TrEMBL
Match: A0A5A7TGX4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold529G00100 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.8e-65
Identity = 149/344 (43.31%), Postives = 192/344 (55.81%), Query Frame = 0


Query: 7    RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKS 66
            RCL C+QVKA  Q+P       S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTK 
Sbjct: 1209 RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKL 1268

Query: 67   AHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALR---------- 126
            AHF+P ++    +K A  + SEI+R HGVPV IVS+RD+RFTS+F + L+          
Sbjct: 1269 AHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSNRDARFTSKFWKGLQTAMGTRLDFS 1328

Query: 127  ---------KVERVNQILEDMLRACVLDFPGAWD-------------------------- 186
                     + ER+NQ+LEDMLRAC L+FPG+WD                          
Sbjct: 1329 TAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEAL 1388

Query: 187  -----------------------QDSDRWSLPITTI-----------IDRRFDGSIR--- 246
                                   +  D+  L +  +           +  RF G      
Sbjct: 1389 YGKCCRSPVCWGEVDVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILE 1448

Query: 247  --GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGIL 266
              G V   L +P      VH V HVSMLR+YVPDPSH+VD+EPL+++E+LS+ E+PV +L
Sbjct: 1449 RIGPVAYRLVLPP-SLSTVHDVIHVSMLRKYVPDPSHVVDYEPLEIDENLSYAEQPVEVL 1508

[Close]

BLAST of Sed0012038 vs. ExPASy TrEMBL
Match: A0A5D3BQF6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold904G00020 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 7.8e-64
Identity = 147/350 (42.00%), Postives = 191/350 (54.57%), Query Frame = 0


Query: 7    RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKS 66
            +CL C+QVKA  Q+P       S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTKS
Sbjct: 878  KCLVCQQVKAPRQKPAGLLQSLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKS 937

Query: 67   AHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALR---------- 126
            AHF+P ++    +K A  + SEI+R HGVPV I+S RD+RFTS+F + L+          
Sbjct: 938  AHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSILSDRDARFTSKFWKGLQTAMGMRLDFS 997

Query: 127  ---------KVERVNQILEDMLRACVLDFPGAWDQD------------------------ 186
                     + ER+NQ+LEDMLRAC L+F G+WD                          
Sbjct: 998  TAFHPQTDGQTERLNQVLEDMLRACALEFLGSWDSHLHLMEFAYNNSFQATIGMAQFEAL 1057

Query: 187  -------------------------------SDRWSLPITTI-----------IDRRFDG 246
                                            D+  L +  +           +  RF G
Sbjct: 1058 YDKCCRSPVCWAESRQKSYADVRRRDLEFDVGDKVFLKVAPMKGVLRFERRGKLSPRFVG 1117

Query: 247  SIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE 266
                    G V   L++P      VH VFHVSMLR+YVPDPSH+VD+EPL+++E+LS+ E
Sbjct: 1118 PFEILERIGPVAYRLALPQ-SLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYTE 1177

[Close]

BLAST of Sed0012038 vs. ExPASy TrEMBL
Match: A0A5A7UC07 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold678G00040 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 1.3e-63
Identity = 146/339 (43.07%), Postives = 190/339 (56.05%), Query Frame = 0


Query: 7    RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKS 66
            RCL C+QVKA  Q+P       S+P+WKWE +SMDFI GLPRT R FT IWV+VDRLTKS
Sbjct: 1216 RCLVCQQVKAPRQKPAGLLQPLSIPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKS 1275

Query: 67   AHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALR---------- 126
            AHF+P ++    +K A  + SEI+R HGVP+ IVS RD+ FTS+F + L+          
Sbjct: 1276 AHFVPGKSTYTASKWAELYMSEIVRLHGVPLSIVSDRDACFTSKFWKRLQTAMGTRLDFS 1335

Query: 127  ---------KVERVNQILEDMLRACVLDFPGAWDQD------------------------ 186
                     + ER+NQ+LEDMLRAC L+FPG   +                         
Sbjct: 1336 TAFHPQTDGQTERLNQVLEDMLRACALEFPGEVGEQRLMGPELVQSTNEAIQKIRSRMHT 1395

Query: 187  --------------------SDRWSLPITTI-----------IDRRFDGSIR-----GLV 246
                                 D+  L +  +           +  RF G        G V
Sbjct: 1396 AQSRQKSYADGRRKDLEFEIGDKVFLKVAPVRGVLRFERRGKLSPRFVGPFEILERIGPV 1455

Query: 247  RQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEEKPVGILAFETK 266
               L++P      VH VFHVSMLR+YVPDPSH+VD+EPL+++E+LS+ E+PV +LA E K
Sbjct: 1456 AYRLALPP-SLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLAREVK 1515

[Close]

BLAST of Sed0012038 vs. ExPASy TrEMBL
Match: A0A5A7SWR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001300 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 3.9e-63
Identity = 147/343 (42.86%), Postives = 188/343 (54.81%), Query Frame = 0


Query: 7    RCLTCRQVKALEQRPPVCCTVPSVPQWKWEEISMDFIAGLPRTPRKFTQIWVIVDRLTKS 66
            RCL C+QVKAL Q+P       SVP+WKWE +SMDFI GLPRT R FT IWV+VDRLTKS
Sbjct: 1119 RCLVCQQVKALRQKPAGLLQPLSVPEWKWENVSMDFITGLPRTLRGFTVIWVVVDRLTKS 1178

Query: 67   AHFIP-ETLIPWNKGAACFWSEIIRYHGVPVRIVSHRDSRFTSRFSRALR---------- 126
            AHF+P ++    +K A  + SEI+R HGVPV IVS RD+RFTS+F + L+          
Sbjct: 1179 AHFVPGKSTYAASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFS 1238

Query: 127  ---------KVERVNQILEDMLRACVLDFPGAWD-------------------------- 186
                     + ER+NQ+LEDMLRAC L+FPG+WD                          
Sbjct: 1239 TAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDYHLHLMEFAYNNSYQATIGMAPFEAL 1298

Query: 187  -----------------------------QDSDRWSLPITTI-----------IDRRFDG 246
                                         +  D+  L +  +           +  RF G
Sbjct: 1299 YGKCCRSPVYWGESRQKSYADVRRKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVG 1358

Query: 247  SIR-----GLVRQALSVPVFGKRKVHSVFHVSMLRQYVPDPSHIVDFEPLQLNEDLSFEE 259
                    G V   L++P      VH VFHVSMLR+YV DPSH+VD+EPL+++E+LS+ E
Sbjct: 1359 PFEILERIGPVAYRLALPP-SLSTVHDVFHVSMLRKYVSDPSHVVDYEPLEIDENLSYTE 1418

The following BLAST results are available for this feature:

BLAST of Sed0012038 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053631.1	1.3e-65	42.86	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0040695.1	3.8e-65	43.31	pol protein [Cucumis melo var. makuwa]	[more]
TYK01415.1	1.6e-63	42.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051051.1	2.7e-63	43.07	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0035480.1	8.0e-63	42.86	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0012038 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.8e-09	33.64	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.8e-09	33.64	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Sed0012038 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJG5	6.4e-66	42.86	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TGX4	1.8e-65	43.31	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold52...	[more]
A0A5D3BQF6	7.8e-64	42.00	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UC07	1.3e-63	43.07	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5A7SWR6	3.9e-63	42.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28...	[more]

BLAST of Sed0012038 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 25..116 e-value: 3.3E-11 score: 44.8
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 30..140
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 30..146
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 179..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0012038.1	Sed0012038.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding