Sed0011952 (gene) Chayote v1

Overview
NameSed0011952
Typegene
OrganismSechium edule (Chayote v1)
DescriptionS locus-related glycoprotein 1 binding pollen coat
LocationLG05: 10651363 .. 10651884 (+)
RNA-Seq ExpressionSed0011952
SyntenySed0011952
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCAACTAAATTCTCTTTTTCACGTTGTCTTCATTTCTTTTATCTTTGTAGGTTCTCTATTTCTTCACCACGTCAAATATTATCATGTTTTAAATTATTATTTTAGTTTTTGTGGGTTTTATTTTATTTTGATATTATTGTTCACAATATAGTTAAAAAGAAAGTTTTGAACTGATTTTTTTTAGTTGGATTAAAATTCTCAAAAATATCTTAAATTAACTGAATAGATAATAGCTTTCTTACTATTCTAACAAGACTTGGACAAATATTATAAAAAAACATATTCTTATTTATGACATTTTTGTTGTTGTTGCATAGTTGCACTGATTTTGGCTCCCCAAAAAGTCTCCGCTGTTCAAAGATGCCAGGAAATATTGAACAACAGTGGTTGCATATTGAAAGACTGTGGACAGAAATGTTGGGAGAAACACTTTTCTATGTCATTAAAATGCATTCCCACCGATCTTAAGCAAACCATCTATGCTTGTTTTTGTTTCTTTGATTGTGGTCAAAATTGA

mRNA sequence

ATGGCGCAACTAAATTCTCTTTTTCACGTTGTCTTCATTTCTTTTATCTTTGTAGTTGCACTGATTTTGGCTCCCCAAAAAGTCTCCGCTGTTCAAAGATGCCAGGAAATATTGAACAACAGTGGTTGCATATTGAAAGACTGTGGACAGAAATGTTGGGAGAAACACTTTTCTATGTCATTAAAATGCATTCCCACCGATCTTAAGCAAACCATCTATGCTTGTTTTTGTTTCTTTGATTGTGGTCAAAATTGA

Coding sequence (CDS)

ATGGCGCAACTAAATTCTCTTTTTCACGTTGTCTTCATTTCTTTTATCTTTGTAGTTGCACTGATTTTGGCTCCCCAAAAAGTCTCCGCTGTTCAAAGATGCCAGGAAATATTGAACAACAGTGGTTGCATATTGAAAGACTGTGGACAGAAATGTTGGGAGAAACACTTTTCTATGTCATTAAAATGCATTCCCACCGATCTTAAGCAAACCATCTATGCTTGTTTTTGTTTCTTTGATTGTGGTCAAAATTGA

Protein sequence

MAQLNSLFHVVFISFIFVVALILAPQKVSAVQRCQEILNNSGCILKDCGQKCWEKHFSMSLKCIPTDLKQTIYACFCFFDCGQN
Homology
BLAST of Sed0011952 vs. NCBI nr
Match: KAE8649772.1 (hypothetical protein Csa_012405, partial [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 8.5e-19
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 20 ALILAPQKVSAVQRCQEILNNSGCILKDCGQKCWEKHFSMSLKCIPTDLKQTIYACFCFF 79
          AL+LA Q VSA QRCQ++L N+GC L DCG+KCWEKH ++S +CIPT+  QTIYAC+CFF
Sbjct: 1  ALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTISHQCIPTNPSQTIYACYCFF 60

Query: 80 DCG 83
          DCG
Sbjct: 61 DCG 63

BLAST of Sed0011952 vs. NCBI nr
Match: KAA0042348.1 (S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >TYK15471.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 4.2e-18
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 0

Query: 10 VVFISFIFVVALILAPQKVSAVQRCQEILNNSGCILKDCGQKCWEKHFSMSLKCIPTDLK 69
          ++ I+    VA+IL PQ   AV+RCQ+ L ++GC L DCGQKCWEKH   S +CIPTD  
Sbjct: 9  ILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASHQCIPTDPG 68

Query: 70 QTIYACFCFFDCGQN 85
          QTIYAC+CF++CGQN
Sbjct: 69 QTIYACYCFYNCGQN 83

BLAST of Sed0011952 vs. NCBI nr
Match: KGN64987.1 (hypothetical protein Csa_022748 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 8.8e-16
Identity = 44/73 (60.27%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 10 VVFISFIFVVALILAPQKVSAVQRCQEILNNSGCILKDCGQKCWEKHFSMSLKCIPTDLK 69
          ++ I  I  VA+I  PQ   A  RCQ+IL NSGC L DCGQKCWEKH   S +CIPTD  
Sbjct: 9  ILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPD 68

Query: 70 QTIYACFCFFDCG 83
          QTIYAC+CF+ CG
Sbjct: 69 QTIYACYCFYTCG 80

BLAST of Sed0011952 vs. NCBI nr
Match: BBH07492.1 (hypothetical protein Prudu_019451 [Prunus dulcis])

HSP 1 Score: 67.4 bits (163), Expect = 6.7e-08
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 30  AVQRCQEILNNSGCILKDCGQKCWEKHFSMSLKCIPTDLKQTIYACFCFFDC 82
           A +RC E L  SGC L DCG+KCWEKH     KCI  ++ QT YAC+C F+C
Sbjct: 62  AQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

BLAST of Sed0011952 vs. NCBI nr
Match: XP_012090834.1 (defensin-like protein 156 [Jatropha curcas])

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-07
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 0

Query: 5  NSLFHVVFISFIFVVALILAPQKVSAVQRCQEILNNSGCILKDCGQKCWEKHFSMSLKCI 64
          N  F+  FI F+ +    + PQ   A ++CQE+L+  GC+L+DC ++C+EKH      CI
Sbjct: 4  NLSFNNFFILFLIISVSSMVPQ-ARAQKKCQEVLHEIGCVLEDCKKECYEKHNENGGVCI 63

Query: 65 PTDLKQTIYACFCFFDCG 83
          P   K+  Y+C+CF+ CG
Sbjct: 64 PNQAKED-YSCYCFWTCG 79

BLAST of Sed0011952 vs. ExPASy TrEMBL
Match: A0A0A0L2R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.2e-20
Identity = 46/73 (63.01%), Postives = 59/73 (80.82%), Query Frame = 0

Query: 10 VVFISFIFVVALILAPQKVSAVQRCQEILNNSGCILKDCGQKCWEKHFSMSLKCIPTDLK 69
          ++  + IF VAL+LA Q VSA QRCQ++L N+GC L DCG+KCWEKH ++S +CIPT+  
Sbjct: 6  IICFALIFAVALLLASQDVSAAQRCQDVLYNTGCNLNDCGKKCWEKHHTVSHQCIPTNPS 65

Query: 70 QTIYACFCFFDCG 83
          QTIYAC+CFFDCG
Sbjct: 66 QTIYACYCFFDCG 78

BLAST of Sed0011952 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 0

Query: 10 VVFISFIFVVALILAPQKVSAVQRCQEILNNSGCILKDCGQKCWEKHFSMSLKCIPTDLK 69
          ++ I+    VA+IL PQ   AV+RCQ+ L ++GC L DCGQKCWEKH   S +CIPTD  
Sbjct: 9  ILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASHQCIPTDPG 68

Query: 70 QTIYACFCFFDCGQN 85
          QTIYAC+CF++CGQN
Sbjct: 69 QTIYACYCFYNCGQN 83

BLAST of Sed0011952 vs. ExPASy TrEMBL
Match: A0A0A0LVZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.2e-16
Identity = 44/73 (60.27%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 10 VVFISFIFVVALILAPQKVSAVQRCQEILNNSGCILKDCGQKCWEKHFSMSLKCIPTDLK 69
          ++ I  I  VA+I  PQ   A  RCQ+IL NSGC L DCGQKCWEKH   S +CIPTD  
Sbjct: 9  ILTIVLIIAVAMISIPQGALAA-RCQDILYNSGCTLADCGQKCWEKHHEASRQCIPTDPD 68

Query: 70 QTIYACFCFFDCG 83
          QTIYAC+CF+ CG
Sbjct: 69 QTIYACYCFYTCG 80

BLAST of Sed0011952 vs. ExPASy TrEMBL
Match: A0A0A0KYP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 0

Query: 1  MAQLNSLFHVVFISFIFVVALILAPQKVSAVQRCQEILNNSGCILKDCGQKCWEKHFSMS 60
          MA L+S F V  I  IF V++IL PQ  SA+ +CQ+ L   GCI  +CGQKC + H   +
Sbjct: 18 MANLSS-FRVAIIIVIFAVSMILVPQGTSAL-KCQDRLYVGGCIQHECGQKCSQLHHGGT 77

Query: 61 LKCIPTDLKQTIYACFCFFDCGQN 85
           KCI TD   T YAC+CF++C +N
Sbjct: 78 SKCISTDPTFTKYACYCFYNCPEN 99

BLAST of Sed0011952 vs. ExPASy TrEMBL
Match: A0A4Y1RT05 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.3e-08
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 0

Query: 30  AVQRCQEILNNSGCILKDCGQKCWEKHFSMSLKCIPTDLKQTIYACFCFFDC 82
           A +RC E L  SGC L DCG+KCWEKH     KCI  ++ QT YAC+C F+C
Sbjct: 62  AQKRCDEQLYASGCTLSDCGKKCWEKHHDPGYKCI-ANVAQTDYACYCMFNC 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649772.18.5e-1968.25hypothetical protein Csa_012405, partial [Cucumis sativus][more]
KAA0042348.14.2e-1858.67S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa] >T... [more]
KGN64987.18.8e-1660.27hypothetical protein Csa_022748 [Cucumis sativus][more]
BBH07492.16.7e-0855.77hypothetical protein Prudu_019451 [Prunus dulcis][more]
XP_012090834.11.5e-0739.74defensin-like protein 156 [Jatropha curcas][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2R32.2e-2063.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G576870 PE=3 SV=1[more]
A0A5A7THQ72.0e-1858.67S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O... [more]
A0A0A0LVZ54.2e-1660.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G172580 PE=3 SV=1[more]
A0A0A0KYP73.1e-1148.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G507400 PE=3 SV=1[more]
A0A4Y1RT053.3e-0855.77Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_019451 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010851Defensin-like proteinPFAMPF07333SLR1-BPcoord: 32..81
e-value: 2.3E-5
score: 24.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0011952.1Sed0011952.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044419 biological process involved in interspecies interaction between organisms