Sed0011921 (gene) Chayote v1

Overview


Name	Sed0011921
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Small ubiquitin-related modifier
Location	LG05: 32721816 .. 32723442 (-)
RNA-Seq Expression	Sed0011921
Synteny	Sed0011921

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTCATCATTTTCTCTCTGTCGTTTTACCCTTTTGCTTCATTTTCTCTCTGTTCTTTTACTCTCTTTTTTTTCCATTGAGATAAATAATCCGACGAACAACAATGTCGGGCACGCCGATCAACGGCAACCGGGGCAAAGAGACGACCCGAGAACCCGACTCGAGCTACGTCAACATCAAGGTGAACGGACAGGTTCGATTTCATTCTATAAAAAAACCGCTTCAGTTTTCAAGAAATCCTTAAAAAAAAAAGACAAGAAACTGGACAGATTTGCGTGTGTTTTTGGTTGTTGTGTTGTTAGGATGGGAGTGAAGTTTTTTTCAAGGTTTTGAAGAAAACGCAGCTGAGGAATCTGATGAACAAGTACTGTCAACGGCAAGGTTTGGATCGGAACGAGATTGCATTTCTGCTCGACGGCCACCAGATCACCGGCACCCAAACGGCCGATGAGGTTTTTTCTTTTTGACAAAATTACTGTTTAGCCCCTAGTGGTTTTTTCTGGTGTACTTTCCATTTGGGATATGTTTTTAAATGAAAAGTTTTCCCAAAATGGTAATAATGTTTACTTTTTGAAGGTGTTTGAATGGGATTTTTAAGAGAAATTAATTTGGGTATTTAAAAAATGGAGAGTTTAGCAAAAAAAACTTCTAAAGGAGTTATAAATAATTGTTGGATTTTAATTGAAACTAATAATTATTTTGAATAGTTAAAAAATGATTATAAATAAATGTTTAGAAATGTATTTTTTTGAAATATTAGAAATAAATAATTAAAAAGGAGTAGTAAGAAATAATTAAATATTTATAAATGAATTTATATAAATGAGAAGAAGCTATTTTTAATAGTGAAAATAAGAAATTATTTTGAAGAGTTATAAAAATTCTTTTGGATATAAATGTTTAAGGATTAGGTAATAAATTTTCAGTCTAAATCCGCAAAAAATATCCCTTTAATGTTGATTTATTTTTATTTGTTTAAATTTAGGTAAAGACCAAAAGTAATCATTAAATTAATATATTTAAATTTAATCTAATTATTATCTTAATTAAAAAACTTAATGAAACAAAAAGTGTCAAAATTTACTATAATCAGCTGTTCGGCTTGGAATTCTAAATATTGTTTCATTAAAAAAAATGGAATTAAATGTTTTGTTGTTGGTTGTCTCTATGAAATATTATCCTTAAGCCTAGTCCCATTATTTTCCCATCATTGATTCATTATGAATATACTCATCTACACTTGATTACTTAAAAAAAAATCTTCATCGTTAAGACAATGATAATGGTTGATGAGATTTTTTTTAAATTTATTTTTTATAATCCCATTTTAATTTTCTGGATTCTGAGTTTGCTTTGAATTTTTATAACTCTAGTTGGGGTTGGAGGACAAGGATGAAATTGATGCCATGAAACACCATGGAGGTGGAGGCGGCGGCAGCGACGACGACGACATAGCAAAGTGAGGGGTTTGGTGAGAAATGAGTTCAAACAATTGAATCCCAAATTTCATGTTTTGTTTGTTTGGATGAACACCATTTGTCAAAAATGTATATTTTTAGTTCTTGGAAGTTGTAGACTTTGGATTATTTTGGTGTTTATACATTCTCTTCTAATGATCTAATTTAGC

mRNA sequence

CATTCATCATTTTCTCTCTGTCGTTTTACCCTTTTGCTTCATTTTCTCTCTGTTCTTTTACTCTCTTTTTTTTCCATTGAGATAAATAATCCGACGAACAACAATGTCGGGCACGCCGATCAACGGCAACCGGGGCAAAGAGACGACCCGAGAACCCGACTCGAGCTACGTCAACATCAAGGTGAACGGACAGGATGGGAGTGAAGTTTTTTTCAAGGTTTTGAAGAAAACGCAGCTGAGGAATCTGATGAACAAGTACTGTCAACGGCAAGGTTTGGATCGGAACGAGATTGCATTTCTGCTCGACGGCCACCAGATCACCGGCACCCAAACGGCCGATGAGTTGGGGTTGGAGGACAAGGATGAAATTGATGCCATGAAACACCATGGAGGTGGAGGCGGCGGCAGCGACGACGACGACATAGCAAAGTGAGGGGTTTGGTGAGAAATGAGTTCAAACAATTGAATCCCAAATTTCATGTTTTGTTTGTTTGGATGAACACCATTTGTCAAAAATGTATATTTTTAGTTCTTGGAAGTTGTAGACTTTGGATTATTTTGGTGTTTATACATTCTCTTCTAATGATCTAATTTAGC

Coding sequence (CDS)

ATGTCGGGCACGCCGATCAACGGCAACCGGGGCAAAGAGACGACCCGAGAACCCGACTCGAGCTACGTCAACATCAAGGTGAACGGACAGGATGGGAGTGAAGTTTTTTTCAAGGTTTTGAAGAAAACGCAGCTGAGGAATCTGATGAACAAGTACTGTCAACGGCAAGGTTTGGATCGGAACGAGATTGCATTTCTGCTCGACGGCCACCAGATCACCGGCACCCAAACGGCCGATGAGTTGGGGTTGGAGGACAAGGATGAAATTGATGCCATGAAACACCATGGAGGTGGAGGCGGCGGCAGCGACGACGACGACATAGCAAAGTGA

Protein sequence

MSGTPINGNRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGGSDDDDIAK

Homology

[Close]

BLAST of Sed0011921 vs. NCBI nr
Match: XP_023553983.1 (small ubiquitin-related modifier 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-27
Identity = 66/101 (65.35%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 4   TPINGNRGKETTR---EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDR 63
           T ++ NR   T +   EP S YVN+KVNGQDGSEV+F++ K+TQL  LM  YC+RQ L+ 
Sbjct: 3   TTMDENREAPTRKPEAEPGSKYVNVKVNGQDGSEVYFRICKRTQLSELMKAYCKRQALEL 62

Query: 64  NEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG 102
             IAFLLDGH I G QTADELG+ED DEIDAMKHHGGGGGG
Sbjct: 63  GTIAFLLDGHAIVGNQTADELGMEDGDEIDAMKHHGGGGGG 103

[Close]

BLAST of Sed0011921 vs. NCBI nr
Match: XP_038888534.1 (small ubiquitin-related modifier 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-27
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 4   TPINGNRGKETT-----REPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGL 63
           +P N N   E T      +PDS YVN+KVNGQDGSEV+F++ K+TQL+ LM  YC+RQGL
Sbjct: 2   SPANKNDSDEETVRKPESKPDSEYVNLKVNGQDGSEVYFRIFKRTQLKKLMKSYCKRQGL 61

Query: 64  DRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGGS 103
           +   IAFLLDGH I GTQTA+EL +ED DEIDAMKHHGGG  G+
Sbjct: 62  ELRTIAFLLDGHSIAGTQTAEELEMEDGDEIDAMKHHGGGSDGA 105

[Close]

BLAST of Sed0011921 vs. NCBI nr
Match: KAA0061648.1 (small ubiquitin-related modifier 1 [Cucumis melo var. makuwa] >TYK05858.1 small ubiquitin-related modifier 1 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 6.4e-27
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 4   TPINGNRGKETTR----EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLD 63
           T +N    +ETTR    +P+S YVN+KVNGQDGSEV+F++ KK++L  LM  YC+RQ L+
Sbjct: 3   TSMNNGSDEETTRKNEPKPESEYVNLKVNGQDGSEVYFRISKKSELSKLMYSYCKRQELE 62

Query: 64  RNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGGS 103
            + IAFL+DGH I GTQTA+ELGLED DEIDAMKHH GGGGG+
Sbjct: 63  FSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGA 105

[Close]

BLAST of Sed0011921 vs. NCBI nr
Match: XP_022969393.1 (small ubiquitin-related modifier 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 130.6 bits (327), Expect = 8.4e-27
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 17  EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQ 76
           +P ++YVN+KVNGQDGSEV+F++ K+TQL  LM  YC+RQ L+   IAFLLDGH I G Q
Sbjct: 19  QPGTNYVNVKVNGQDGSEVYFRICKRTQLSKLMKGYCKRQALELRTIAFLLDGHAIAGNQ 78

Query: 77  TADELGLEDKDEIDAMKHHGGGGGG 102
           TADELG+ED DEIDAMKHHGGGGGG
Sbjct: 79  TADELGMEDGDEIDAMKHHGGGGGG 103

[Close]

BLAST of Sed0011921 vs. NCBI nr
Match: XP_031743856.1 (small ubiquitin-related modifier 1-like [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 64/101 (63.37%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 4   TPINGNRGKETTR----EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLD 63
           T +N    +ETTR    +P+S YVN+KVNGQDGS+V+F++ KKT++  LM+ YCQRQ L+
Sbjct: 3   TLMNNGIDEETTRKTKPKPESEYVNLKVNGQDGSKVYFRIFKKTEVNKLMDSYCQRQELE 62

Query: 64  RNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGG 101
            + IAFL+DGH I GTQTA+ELGLED DEIDAMKHH GGGG
Sbjct: 63  FSTIAFLMDGHPIAGTQTAEELGLEDGDEIDAMKHHCGGGG 103

[Close]

BLAST of Sed0011921 vs. ExPASy Swiss-Prot
Match: Q9FLP6 (Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.4e-22
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 1   MSGTPINGNRGKETTREPD-SSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLD 60
           MS TP       E  ++PD  +++N+KV GQDG+EVFF++ + TQL+ LMN YC RQ +D
Sbjct: 1   MSATP-------EEDKKPDQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD 60

Query: 61  RNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG 100
            N IAFL DG ++   QT DEL +ED DEIDAM H  GGG
Sbjct: 61  FNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGG 93

[Close]

BLAST of Sed0011921 vs. ExPASy Swiss-Prot
Match: P55852 (Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.9e-21
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 6   INGNRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAF 65
           ++ N+ ++       +++N+KV GQDG+EVFF++ + TQL+ LMN YC RQ +D N IAF
Sbjct: 1   MSANQEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAF 60

Query: 66  LLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG 102
           L DG ++   QT DEL +ED DEIDAM H  GG GG
Sbjct: 61  LFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGG 96

[Close]

BLAST of Sed0011921 vs. ExPASy Swiss-Prot
Match: P55857 (Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-21
Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 17 EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQ 76
          E   +++N+KV GQDG+EVFF++ + TQL+ LMN YC RQ +D N IAFL DG ++ G Q
Sbjct: 15 EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQ 74

Query: 77 TADELGLEDKDEIDAMKHHGGG 99
          T DEL +ED DEIDAM H  GG
Sbjct: 75 TPDELEMEDGDEIDAMLHQTGG 96

[Close]

BLAST of Sed0011921 vs. ExPASy Swiss-Prot
Match: O13351 (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pmt3 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 4.5e-15
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 4   TPINGNRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEI 63
           TP  G+  ++  + P + ++N+KV GQD +EVFFK+ K T+   LM  YC RQG   N +
Sbjct: 18  TPTTGDTSQQDVK-PSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSL 77

Query: 64  AFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGG 99
            FL+DG +I   QT  EL +ED D+I+A+    GG
Sbjct: 78  RFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111

[Close]

BLAST of Sed0011921 vs. ExPASy Swiss-Prot
Match: Q7ZTK7 (Small ubiquitin-related modifier 2-A OS=Xenopus laevis OX=8355 GN=sumo2-a PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.5e-14
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 0


Query: 9  NRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLD 68
          ++ KE  +  ++ ++N+KV GQDGS V FK+ ++T L  LM  YC+RQGL   +I F  D
Sbjct: 4  DKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCERQGLSMRQIRFRFD 63

Query: 69 GHQITGTQTADELGLEDKDEIDAMKHHGGG 99
          G  I  T T  +L +ED+D ID  +   GG
Sbjct: 64 GQPINETDTPAQLEMEDEDTIDVFQQQTGG 93

[Close]

BLAST of Sed0011921 vs. ExPASy TrEMBL
Match: A0A5A7V249 (Small ubiquitin-related modifier 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00130 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.1e-27
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 4   TPINGNRGKETTR----EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLD 63
           T +N    +ETTR    +P+S YVN+KVNGQDGSEV+F++ KK++L  LM  YC+RQ L+
Sbjct: 3   TSMNNGSDEETTRKNEPKPESEYVNLKVNGQDGSEVYFRISKKSELSKLMYSYCKRQELE 62

Query: 64  RNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGGS 103
            + IAFL+DGH I GTQTA+ELGLED DEIDAMKHH GGGGG+
Sbjct: 63  FSTIAFLVDGHPIAGTQTAEELGLEDGDEIDAMKHHYGGGGGA 105

[Close]

BLAST of Sed0011921 vs. ExPASy TrEMBL
Match: A0A6J1I0U8 (small ubiquitin-related modifier 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468415 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.1e-27
Identity = 60/85 (70.59%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 17  EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQ 76
           +P ++YVN+KVNGQDGSEV+F++ K+TQL  LM  YC+RQ L+   IAFLLDGH I G Q
Sbjct: 19  QPGTNYVNVKVNGQDGSEVYFRICKRTQLSKLMKGYCKRQALELRTIAFLLDGHAIAGNQ 78

Query: 77  TADELGLEDKDEIDAMKHHGGGGGG 102
           TADELG+ED DEIDAMKHHGGGGGG
Sbjct: 79  TADELGMEDGDEIDAMKHHGGGGGG 103

[Close]

BLAST of Sed0011921 vs. ExPASy TrEMBL
Match: A0A6J1D1W9 (small ubiquitin-related modifier 1-like OS=Momordica charantia OX=3673 GN=LOC111016840 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 9.1e-27
Identity = 64/98 (65.31%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 9   NRGKETTR----EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIA 68
           ++ +E+TR    EPD  YVNIKVNGQDGSEV+F+V KKTQL+ LM  YCQRQG D+  +A
Sbjct: 2   SKREESTRKPESEPDPEYVNIKVNGQDGSEVYFRVRKKTQLKKLMASYCQRQGQDQRIVA 61

Query: 69  FLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGGS 103
           FLLDGH ITG QT ++L L+D DEIDAM HHGGGGG +
Sbjct: 62  FLLDGHHITGNQTPEQLELKDGDEIDAMNHHGGGGGAN 99

[Close]

BLAST of Sed0011921 vs. ExPASy TrEMBL
Match: A0A6J1GLF8 (Small ubiquitin-related modifier OS=Cucurbita moschata OX=3662 GN=LOC111455344 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.7e-26
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 21  SYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADE 80
           +YVN+KVNGQDGSEV+F++ K+TQL  LM  YC+RQ L+   IAFLLDGH I G QTADE
Sbjct: 24  NYVNVKVNGQDGSEVYFRICKRTQLSKLMKAYCKRQALELRTIAFLLDGHAIAGNQTADE 83

Query: 81  LGLEDKDEIDAMKHHGGGGGG 102
           LG+ED D+IDAMKHHGGGGGG
Sbjct: 84  LGMEDGDKIDAMKHHGGGGGG 104

[Close]

BLAST of Sed0011921 vs. ExPASy TrEMBL
Match: A0A6P6B2R0 (Small ubiquitin-related modifier OS=Durio zibethinus OX=66656 GN=LOC111314404 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.1e-22
Identity = 57/104 (54.81%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 1   MSGTPINGNRGKETTREP--DSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGL 60
           MS T   G  G+E  ++P   S+++N+KV GQDG+EVFF++ + TQL+ LMN YC RQ +
Sbjct: 1   MSATASVGGGGQEEDKKPADQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV 60

Query: 61  DRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGGS 103
           D N IAFL DG ++ G QT DEL +ED DEIDAM H  GGG GS
Sbjct: 61  DMNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGGCGS 104

[Close]

BLAST of Sed0011921 vs. TAIR 10
Match: AT5G55160.1 (small ubiquitin-like modifier 2 )

HSP 1 Score: 104.4 bits (259), Expect = 6.0e-23
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 0


Query: 1   MSGTPINGNRGKETTREPD-SSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLD 60
           MS TP       E  ++PD  +++N+KV GQDG+EVFF++ + TQL+ LMN YC RQ +D
Sbjct: 1   MSATP-------EEDKKPDQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD 60

Query: 61  RNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG 100
            N IAFL DG ++   QT DEL +ED DEIDAM H  GGG
Sbjct: 61  FNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGG 93

[Close]

BLAST of Sed0011921 vs. TAIR 10
Match: AT4G26840.1 (small ubiquitin-like modifier 1 )

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-22
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 6   INGNRGKETTREPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAF 65
           ++ N+ ++       +++N+KV GQDG+EVFF++ + TQL+ LMN YC RQ +D N IAF
Sbjct: 1   MSANQEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAF 60

Query: 66  LLDGHQITGTQTADELGLEDKDEIDAMKHHGGGGGG 102
           L DG ++   QT DEL +ED DEIDAM H  GG GG
Sbjct: 61  LFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGSGG 96

[Close]

BLAST of Sed0011921 vs. TAIR 10
Match: AT5G55160.2 (small ubiquitin-like modifier 2 )

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-20
Identity = 53/113 (46.90%), Postives = 68/113 (60.18%), Query Frame = 0


Query: 1   MSGTPINGNRGKETTREPD-SSYVNIKVNGQ-------------DGSEVFFKVLKKTQLR 60
           MS TP       E  ++PD  +++N+KV GQ             DG+EVFF++ + TQL+
Sbjct: 1   MSATP-------EEDKKPDQGAHINLKVKGQAFFVVGTWLVIDTDGNEVFFRIKRSTQLK 60

Query: 61  NLMNKYCQRQGLDRNEIAFLLDGHQITGTQTADELGLEDKDEIDAMKHHGGGG 100
            LMN YC RQ +D N IAFL DG ++   QT DEL +ED DEIDAM H  GGG
Sbjct: 61  KLMNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGG 106

[Close]

BLAST of Sed0011921 vs. TAIR 10
Match: AT5G55170.1 (small ubiquitin-like modifier 3 )

HSP 1 Score: 70.5 bits (171), Expect = 9.6e-13
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 17 EPDSSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQ 76
          +   ++V +KV  QDG EV FK  K   L+ LM  YC R+GL  +  AF+ +G +I G +
Sbjct: 12 QEQEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNGARIGGLE 71

Query: 77 TADELGLEDKDEIDAMKHHGGG 99
          T DEL +ED D IDA +   GG
Sbjct: 72 TPDELDMEDGDVIDACRAMSGG 93

[Close]

BLAST of Sed0011921 vs. TAIR 10
Match: AT5G55856.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 3.6e-12
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 0


Query: 20 SSYVNIKVNGQDGSEVFFKVLKKTQLRNLMNKYCQRQGLDRNEIAFLLDGHQITGTQTAD 79
          SS++ +KV  QD   V+F++ +  +LR +M+ Y  + G++ + + FL DG++I   QT +
Sbjct: 12 SSHITVKVKNQDDICVYFRIKRDVELRKMMHAYSDKVGVEMSTLRFLFDGNRIKLNQTPN 71

Query: 80 ELGLEDKDEIDAMKHHGGG 99
          ELGLED+DEI+A     GG
Sbjct: 72 ELGLEDEDEIEAFGEQLGG 90

The following BLAST results are available for this feature:

BLAST of Sed0011921 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023553983.1	1.3e-27	65.35	small ubiquitin-related modifier 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038888534.1	2.2e-27	62.50	small ubiquitin-related modifier 1-like isoform X1 [Benincasa hispida]	[more]
KAA0061648.1	6.4e-27	63.11	small ubiquitin-related modifier 1 [Cucumis melo var. makuwa] >TYK05858.1 small ...	[more]
XP_022969393.1	8.4e-27	70.59	small ubiquitin-related modifier 1-like isoform X2 [Cucurbita maxima]	[more]
XP_031743856.1	1.1e-26	63.37	small ubiquitin-related modifier 1-like [Cucumis sativus]	[more]

BLAST of Sed0011921 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLP6	8.4e-22	53.00	Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1...	[more]
P55852	1.9e-21	50.00	Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1...	[more]
P55857	3.2e-21	57.32	Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=S...	[more]
O13351	4.5e-15	43.16	Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
Q7ZTK7	6.5e-14	42.22	Small ubiquitin-related modifier 2-A OS=Xenopus laevis OX=8355 GN=sumo2-a PE=3 S...	[more]

BLAST of Sed0011921 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V249	3.1e-27	63.11	Small ubiquitin-related modifier 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1I0U8	4.1e-27	70.59	small ubiquitin-related modifier 1-like isoform X2 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1D1W9	9.1e-27	65.31	small ubiquitin-related modifier 1-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1GLF8	7.7e-26	71.60	Small ubiquitin-related modifier OS=Cucurbita moschata OX=3662 GN=LOC111455344 P...	[more]
A0A6P6B2R0	5.1e-22	54.81	Small ubiquitin-related modifier OS=Durio zibethinus OX=66656 GN=LOC111314404 PE...	[more]

BLAST of Sed0011921 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55160.1	6.0e-23	53.00	small ubiquitin-like modifier 2	[more]
AT4G26840.1	1.3e-22	50.00	small ubiquitin-like modifier 1	[more]
AT5G55160.2	3.6e-20	46.90	small ubiquitin-like modifier 2	[more]
AT5G55170.1	9.6e-13	43.90	small ubiquitin-like modifier 3	[more]
AT5G55856.1	3.6e-12	40.51	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 23..94 e-value: 2.1E-5 score: 34.0
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 23..98 score: 11.202653
IPR022617	Rad60/SUMO-like domain	PFAM	PF11976	Rad60-SLD	coord: 24..92 e-value: 3.1E-19 score: 68.5
None	No IPR available	GENE3D	3.10.20.90		coord: 7..98 e-value: 3.0E-29 score: 103.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..109
None	No IPR available	PANTHER	PTHR10562:SF85	SMALL UBIQUITIN-RELATED MODIFIER	coord: 18..100
None	No IPR available	PANTHER	PTHR10562	SMALL UBIQUITIN-RELATED MODIFIER	coord: 18..100
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 8..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011921.1	Sed0011921.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding