Sed0011914 (gene) Chayote v1

Overview


Name	Sed0011914
Type	gene
Organism	Sechium edule (Chayote v1)
Description	root phototropism protein 3
Location	LG13: 2436292 .. 2437223 (+)
RNA-Seq Expression	Sed0011914
Synteny	Sed0011914

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGACTCTATAGTTGTGTTGAAAAGTTGCGAGAAGCTCTCGCCGTGGGCGGAGAATCTACAAATCGTCCGAAGATGCAGCAAGTCAATCGCTTGGAAAGCATGTGCGAATCCGAAAAGGATTAGATGGGATTACACTGGCAAACCCCTAAGAAGGTGTTTGTTTGATGTAATTAACGAGGTATTACAAATGACGTTTTACAACTTCTGTTTAAACAATCACATTCAAACGACCAACTGTAGACACTCAAAATAATCACTCATTTCTAACTACTCAAAATAATCATTTATTTGTAACTAACTCATTTCTAATAGTTCGTGTCTTATCATTCATTTTTAACCACTCATTTCTAATCTCTCAAAATAATCACTCATTTCTAACTACATCCAAACGAGCTATTGTCTGCAACTTCTCTACAAAAATCATCATCCAAACGAGCTATTAACTGCAACCCCTCTACAAATAACCACATTCAAACGACCTATTACTAAAATTCAAATTTCTAATCACTCAAAATAACTCCGCATTTATAATCACACGCTATAATTCCACATTCAAACACCTTCTAAGTGTTTCTAGTCCGAATTGGAATGATTTGAAGAATTCAAGCCCTAGCAGGAATCAGTTTGTTCCTCCTGATTGGTGGTTTGAGGATGTGTCTATCTTGAGGATGGATCATTTTGTTAGAGTAATCACATCAATCAAAGTAAAGGGAATGAGGTTTGAACTGATTGATTCTTCGATTATGCATTATTTGTCGAAATGGCTTCCCGGTTTGGTTACGGATTCGACAAATGCTGGCAATGAAGGAAGTACGAGCACGACTAGTAACATGAGCGGTGGCAGCAACAGTTGGAAAGGAGGGCTTCATTTGATTGTGGCTGGTAACAAGGAAGATCATTCGGCGAATCAGGCGAAAGATCAATGA

mRNA sequence

ATGGAGGGACTCTATAGTTGTGTTGAAAAGTTGCGAGAAGCTCTCGCCGTGGGCGGAGAATCTACAAATCGTCCGAAGATGCAGCAAGTCAATCGCTTGGAAAGCATTCCGAATTGGAATGATTTGAAGAATTCAAGCCCTAGCAGGAATCAGTTTGTTCCTCCTGATTGGTGGTTTGAGGATGTGTCTATCTTGAGGATGGATCATTTTGTTAGAGTAATCACATCAATCAAAGTAAAGGGAATGAGGTTTGAACTGATTGATTCTTCGATTATGCATTATTTGTCGAAATGGCTTCCCGGTTTGGTTACGGATTCGACAAATGCTGGCAATGAAGGAAGTACGAGCACGACTAGTAACATGAGCGGTGGCAGCAACAGTTGGAAAGGAGGGCTTCATTTGATTGTGGCTGGTAACAAGGAAGATCATTCGGCGAATCAGGCGAAAGATCAATGA

Coding sequence (CDS)

ATGGAGGGACTCTATAGTTGTGTTGAAAAGTTGCGAGAAGCTCTCGCCGTGGGCGGAGAATCTACAAATCGTCCGAAGATGCAGCAAGTCAATCGCTTGGAAAGCATTCCGAATTGGAATGATTTGAAGAATTCAAGCCCTAGCAGGAATCAGTTTGTTCCTCCTGATTGGTGGTTTGAGGATGTGTCTATCTTGAGGATGGATCATTTTGTTAGAGTAATCACATCAATCAAAGTAAAGGGAATGAGGTTTGAACTGATTGATTCTTCGATTATGCATTATTTGTCGAAATGGCTTCCCGGTTTGGTTACGGATTCGACAAATGCTGGCAATGAAGGAAGTACGAGCACGACTAGTAACATGAGCGGTGGCAGCAACAGTTGGAAAGGAGGGCTTCATTTGATTGTGGCTGGTAACAAGGAAGATCATTCGGCGAATCAGGCGAAAGATCAATGA

Protein sequence

MEGLYSCVEKLREALAVGGESTNRPKMQQVNRLESIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHLIVAGNKEDHSANQAKDQ

Homology

[Close]

BLAST of Sed0011914 vs. NCBI nr
Match: XP_016902943.1 (PREDICTED: root phototropism protein 3 [Cucumis melo] >KAA0056629.1 root phototropism protein 3 [Cucumis melo var. makuwa] >TYK07556.1 root phototropism protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 5.2e-51
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 35  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHY 94
           S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY
Sbjct: 208 SSPKWNDLKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGSSIMHY 267

Query: 95  LSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHLIVAGNKEDHSANQAKDQ 152
            SKWLPGLVTD+TNAG+EGSTSTTSN S GSNSWKGGLH+IVAGNKEDHSA QAKDQ
Sbjct: 268 SSKWLPGLVTDATNAGDEGSTSTTSNTSSGSNSWKGGLHMIVAGNKEDHSAIQAKDQ 324

[Close]

BLAST of Sed0011914 vs. NCBI nr
Match: XP_031740285.1 (root phototropism protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 5.2e-51
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 35  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHY 94
           S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY
Sbjct: 147 SSPKWNDLKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGSSIMHY 206

Query: 95  LSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHLIVAGNKEDHSANQAKDQ 152
            SKWLPGLVTD+TNAG+EGSTSTTSN S GSNSWKGGLH+IVAGNKEDHSA QAKDQ
Sbjct: 207 SSKWLPGLVTDTTNAGDEGSTSTTSNTSSGSNSWKGGLHMIVAGNKEDHSAIQAKDQ 263

[Close]

BLAST of Sed0011914 vs. NCBI nr
Match: XP_004137156.1 (root phototropism protein 3 isoform X1 [Cucumis sativus] >KGN53732.1 hypothetical protein Csa_014472 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 5.2e-51
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 35  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHY 94
           S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY
Sbjct: 208 SSPKWNDLKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGSSIMHY 267

Query: 95  LSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHLIVAGNKEDHSANQAKDQ 152
            SKWLPGLVTD+TNAG+EGSTSTTSN S GSNSWKGGLH+IVAGNKEDHSA QAKDQ
Sbjct: 268 SSKWLPGLVTDTTNAGDEGSTSTTSNTSSGSNSWKGGLHMIVAGNKEDHSAIQAKDQ 324

[Close]

BLAST of Sed0011914 vs. NCBI nr
Match: XP_038905136.1 (root phototropism protein 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-50
Identity = 102/117 (87.18%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 35  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHY 94
           S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY
Sbjct: 208 SSPKWNDLKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGSSIMHY 267

Query: 95  LSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHLIVAGNKEDHSANQAKDQ 152
            SKWLPGLVTD+TNAG+EGSTSTTSN S GS+SWKGGLH+IVAGNKEDHSA QAKDQ
Sbjct: 268 SSKWLPGLVTDTTNAGDEGSTSTTSNTSSGSSSWKGGLHMIVAGNKEDHSAIQAKDQ 324

[Close]

BLAST of Sed0011914 vs. NCBI nr
Match: XP_038905138.1 (root phototropism protein 3-like isoform X2 [Benincasa hispida])

HSP 1 Score: 209.5 bits (532), Expect = 2.0e-50
Identity = 102/117 (87.18%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 35  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHY 94
           S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY
Sbjct: 147 SSPKWNDLKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGSSIMHY 206

Query: 95  LSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHLIVAGNKEDHSANQAKDQ 152
            SKWLPGLVTD+TNAG+EGSTSTTSN S GS+SWKGGLH+IVAGNKEDHSA QAKDQ
Sbjct: 207 SSKWLPGLVTDTTNAGDEGSTSTTSNTSSGSSSWKGGLHMIVAGNKEDHSAIQAKDQ 263

[Close]

BLAST of Sed0011914 vs. ExPASy Swiss-Prot
Match: Q9FMF5 (Root phototropism protein 3 OS=Arabidopsis thaliana OX=3702 GN=RPT3 PE=1 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-28
Identity = 74/141 (52.48%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 25  PKMQQVNRLESIPNWNDLKNS----SPSRN---QFVPPDWWFEDVSILRMDHFVRVITSI 84
           P     N   S P WN+ K+S    SPSRN   Q VPPDWWFEDVSILR+DHFVRVIT+I
Sbjct: 212 PSPSTTNFAGSSPRWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSILRIDHFVRVITAI 271

Query: 85  KVKGMRFELIDSSIMHYLSKWLPGLVTDSTNA----------------GNEGSTSTTSNM 141
           KVKGMRFEL+ + IMHY  KWLPGL+ +   A                G+E S S  SN 
Sbjct: 272 KVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAIGGGLGLGGDEMSISCGSNS 331

[Close]

BLAST of Sed0011914 vs. ExPASy Swiss-Prot
Match: Q5KS50 (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CPT1 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.9e-22
Identity = 56/117 (47.86%), Postives = 72/117 (61.54%), Query Frame = 0


Query: 37  PNWN-------DLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDS 96
           P WN       + K SSPSR    P DWWFEDVS+LR+DHFVRV+T+IKVKGMRF+LI +
Sbjct: 242 PRWNVGGGGGGESKESSPSRQAVPPADWWFEDVSVLRIDHFVRVVTAIKVKGMRFDLIGA 301

Query: 97  SIMHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHLIV----AGNKED 143
           +I HY SKWLPGL  D+            ++ +G      GGLH+++     G K+D
Sbjct: 302 AITHYASKWLPGLTKDAPLGATHDEPWAQASAAGVGG---GGLHMMIISGAGGGKDD 355

[Close]

BLAST of Sed0011914 vs. ExPASy Swiss-Prot
Match: Q9FYC8 (BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana OX=3702 GN=At3g44820 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-07
Identity = 25/64 (39.06%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 39  WNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKW 98
           WN +   +  R+     DWW+ED+S L +D F R+I +++ KG+R E +  ++M+Y  K+
Sbjct: 196 WNGINTGARMRSS--GSDWWYEDISYLSVDLFKRLIKTMETKGIRAESLAGAMMYYARKY 255

Query: 99  LPGL 103
           LPGL
Sbjct: 256 LPGL 257

[Close]

BLAST of Sed0011914 vs. ExPASy Swiss-Prot
Match: Q9C9Z7 (BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana OX=3702 GN=At3g08570 PE=2 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-06
Identity = 21/48 (43.75%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 55  PDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGL 103
           P+WW ED+S LR+D++ RV++++   G+R E I +S+MHY  + L G+
Sbjct: 209 PEWWIEDLSALRIDYYARVVSAMARTGLRSESIITSLMHYAQESLKGI 256

[Close]

BLAST of Sed0011914 vs. ExPASy Swiss-Prot
Match: Q9S9Q9 (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 6.9e-06
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 39  WNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKW 98
           WN +  S+ +R +    DWW+ED S+L    F R+IT ++ +G+R ++I  S+ +Y  K 
Sbjct: 199 WNGI--STGARPKHTSSDWWYEDASMLSFPLFKRLITVMESRGIREDIIAGSLTYYTRKH 258

Query: 99  LPGLVTDSTNAGNEGSTST 118
           LPGL        + G  ST
Sbjct: 259 LPGLKRRRGGPESSGRFST 275

[Close]

BLAST of Sed0011914 vs. ExPASy TrEMBL
Match: A0A5D3CB29 (Root phototropism protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00270 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.5e-51
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 35  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHY 94
           S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY
Sbjct: 208 SSPKWNDLKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGSSIMHY 267

Query: 95  LSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHLIVAGNKEDHSANQAKDQ 152
            SKWLPGLVTD+TNAG+EGSTSTTSN S GSNSWKGGLH+IVAGNKEDHSA QAKDQ
Sbjct: 268 SSKWLPGLVTDATNAGDEGSTSTTSNTSSGSNSWKGGLHMIVAGNKEDHSAIQAKDQ 324

[Close]

BLAST of Sed0011914 vs. ExPASy TrEMBL
Match: A0A0A0KZC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113150 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.5e-51
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 35  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHY 94
           S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY
Sbjct: 208 SSPKWNDLKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGSSIMHY 267

Query: 95  LSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHLIVAGNKEDHSANQAKDQ 152
            SKWLPGLVTD+TNAG+EGSTSTTSN S GSNSWKGGLH+IVAGNKEDHSA QAKDQ
Sbjct: 268 SSKWLPGLVTDTTNAGDEGSTSTTSNTSSGSNSWKGGLHMIVAGNKEDHSAIQAKDQ 324

[Close]

BLAST of Sed0011914 vs. ExPASy TrEMBL
Match: A0A1S4E3Y8 (root phototropism protein 3 OS=Cucumis melo OX=3656 GN=LOC103501163 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.5e-51
Identity = 103/117 (88.03%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 35  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHY 94
           S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY
Sbjct: 208 SSPKWNDLKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGSSIMHY 267

Query: 95  LSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHLIVAGNKEDHSANQAKDQ 152
            SKWLPGLVTD+TNAG+EGSTSTTSN S GSNSWKGGLH+IVAGNKEDHSA QAKDQ
Sbjct: 268 SSKWLPGLVTDATNAGDEGSTSTTSNTSSGSNSWKGGLHMIVAGNKEDHSAIQAKDQ 324

[Close]

BLAST of Sed0011914 vs. ExPASy TrEMBL
Match: A0A6J1FW45 (root phototropism protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111447857 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.8e-49
Identity = 100/120 (83.33%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 32  RLESIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSI 91
           ++ S P WNDLK+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSI
Sbjct: 205 KVSSSPKWNDLKDSSPSRNQLVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGSSI 264

Query: 92  MHYLSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHLIVAGNKEDHSANQAKDQ 151
           MHY SKWLPGLVTD+T+AG+EGSTSTTSN S GSNSWKGGLH+IVAGNKED S  QAKDQ
Sbjct: 265 MHYSSKWLPGLVTDTTSAGDEGSTSTTSNTSSGSNSWKGGLHMIVAGNKEDPSTIQAKDQ 324

[Close]

BLAST of Sed0011914 vs. ExPASy TrEMBL
Match: A0A6J1D4V9 (root phototropism protein 3-like OS=Momordica charantia OX=3673 GN=LOC111017624 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.2e-48
Identity = 99/117 (84.62%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 35  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHY 94
           S P WND+K+SSPSRNQ VPPDWWFEDVSILR+DHFVRVIT+IKVKGMRFELI SSIMHY
Sbjct: 207 SSPKWNDIKDSSPSRNQHVPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELIGSSIMHY 266

Query: 95  LSKWLPGLVTDSTNAGNEGSTSTTSNMSGGSNSWKGGLHLIVAGNKEDHSANQAKDQ 152
            SKWLPGLVTD   AG+EGSTSTTSN S GSNSWKGGLH+IVAGNKEDHS  QAKDQ
Sbjct: 267 SSKWLPGLVTDGAIAGDEGSTSTTSNTSSGSNSWKGGLHMIVAGNKEDHSMLQAKDQ 323

[Close]

BLAST of Sed0011914 vs. TAIR 10
Match: AT5G64330.1 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-29
Identity = 74/141 (52.48%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 25  PKMQQVNRLESIPNWNDLKNS----SPSRN---QFVPPDWWFEDVSILRMDHFVRVITSI 84
           P     N   S P WN+ K+S    SPSRN   Q VPPDWWFEDVSILR+DHFVRVIT+I
Sbjct: 212 PSPSTTNFAGSSPRWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSILRIDHFVRVITAI 271

Query: 85  KVKGMRFELIDSSIMHYLSKWLPGLVTDSTNA----------------GNEGSTSTTSNM 141
           KVKGMRFEL+ + IMHY  KWLPGL+ +   A                G+E S S  SN 
Sbjct: 272 KVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAIGGGLGLGGDEMSISCGSNS 331

[Close]

BLAST of Sed0011914 vs. TAIR 10
Match: AT5G64330.2 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-29
Identity = 74/141 (52.48%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 25  PKMQQVNRLESIPNWNDLKNS----SPSRN---QFVPPDWWFEDVSILRMDHFVRVITSI 84
           P     N   S P WN+ K+S    SPSRN   Q VPPDWWFEDVSILR+DHFVRVIT+I
Sbjct: 212 PSPSTTNFAGSSPRWNESKDSSFYCSPSRNTNSQPVPPDWWFEDVSILRIDHFVRVITAI 271

Query: 85  KVKGMRFELIDSSIMHYLSKWLPGLVTDSTNA----------------GNEGSTSTTSNM 141
           KVKGMRFEL+ + IMHY  KWLPGL+ +   A                G+E S S  SN 
Sbjct: 272 KVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAPAMSSAIGGGLGLGGDEMSISCGSNS 331

[Close]

BLAST of Sed0011914 vs. TAIR 10
Match: AT1G52770.1 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 0


Query: 35  SIPNWNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHY 94
           S P    +   SPS +       WF+D  IL +D+FV+ I  IK KG+R +LI S I+HY
Sbjct: 5   SSPESATISTKSPSTSTGKMECSWFDDGCILGIDYFVKTIAGIKSKGVRPDLIGSIIVHY 64

Query: 95  LSKWLPGL 103
            S+WLP L
Sbjct: 65  ASQWLPDL 72

[Close]

BLAST of Sed0011914 vs. TAIR 10
Match: AT3G44820.1 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 25/64 (39.06%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 39  WNDLKNSSPSRNQFVPPDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKW 98
           WN +   +  R+     DWW+ED+S L +D F R+I +++ KG+R E +  ++M+Y  K+
Sbjct: 196 WNGINTGARMRSS--GSDWWYEDISYLSVDLFKRLIKTMETKGIRAESLAGAMMYYARKY 255

Query: 99  LPGL 103
           LPGL
Sbjct: 256 LPGL 257

[Close]

BLAST of Sed0011914 vs. TAIR 10
Match: AT3G08570.1 (Phototropic-responsive NPH3 family protein )

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-07
Identity = 21/48 (43.75%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 55  PDWWFEDVSILRMDHFVRVITSIKVKGMRFELIDSSIMHYLSKWLPGL 103
           P+WW ED+S LR+D++ RV++++   G+R E I +S+MHY  + L G+
Sbjct: 209 PEWWIEDLSALRIDYYARVVSAMARTGLRSESIITSLMHYAQESLKGI 256

The following BLAST results are available for this feature:

BLAST of Sed0011914 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902943.1	5.2e-51	88.03	PREDICTED: root phototropism protein 3 [Cucumis melo] >KAA0056629.1 root phototr...	[more]
XP_031740285.1	5.2e-51	88.03	root phototropism protein 3 isoform X2 [Cucumis sativus]	[more]
XP_004137156.1	5.2e-51	88.03	root phototropism protein 3 isoform X1 [Cucumis sativus] >KGN53732.1 hypothetica...	[more]
XP_038905136.1	2.0e-50	87.18	root phototropism protein 3-like isoform X1 [Benincasa hispida]	[more]
XP_038905138.1	2.0e-50	87.18	root phototropism protein 3-like isoform X2 [Benincasa hispida]	[more]

BLAST of Sed0011914 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMF5	1.7e-28	52.48	Root phototropism protein 3 OS=Arabidopsis thaliana OX=3702 GN=RPT3 PE=1 SV=2	[more]
Q5KS50	6.9e-22	47.86	Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CP...	[more]
Q9FYC8	1.6e-07	39.06	BTB/POZ domain-containing protein At3g44820 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q9C9Z7	1.8e-06	43.75	BTB/POZ domain-containing protein At3g08570 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q9S9Q9	6.9e-06	35.44	BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]

BLAST of Sed0011914 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CB29	2.5e-51	88.03	Root phototropism protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0KZC3	2.5e-51	88.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113150 PE=3 SV=1	[more]
A0A1S4E3Y8	2.5e-51	88.03	root phototropism protein 3 OS=Cucumis melo OX=3656 GN=LOC103501163 PE=3 SV=1	[more]
A0A6J1FW45	1.8e-49	83.33	root phototropism protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111447857 PE=3 S...	[more]
A0A6J1D4V9	1.2e-48	84.62	root phototropism protein 3-like OS=Momordica charantia OX=3673 GN=LOC111017624 ...	[more]

BLAST of Sed0011914 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64330.1	1.2e-29	52.48	Phototropic-responsive NPH3 family protein	[more]
AT5G64330.2	1.2e-29	52.48	Phototropic-responsive NPH3 family protein	[more]
AT1G52770.1	1.2e-08	44.12	Phototropic-responsive NPH3 family protein	[more]
AT3G44820.1	1.2e-08	39.06	Phototropic-responsive NPH3 family protein	[more]
AT3G08570.1	1.3e-07	43.75	Phototropic-responsive NPH3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027356	NPH3 domain	PFAM	PF03000	NPH3	coord: 56..116 e-value: 3.6E-17 score: 62.9
IPR027356	NPH3 domain	PROSITE	PS51649	NPH3	coord: 56..151 score: 14.443974
IPR029959	Root phototropism protein 3-like	PANTHER	PTHR32370:SF92	PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN	coord: 30..151
IPR043454	NPH3/RPT2-like family	PANTHER	PTHR32370	OS12G0117600 PROTEIN	coord: 30..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011914.1	Sed0011914.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016020	membrane