Sed0011766 (gene) Chayote v1

Overview


Name	Sed0011766
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG05: 19588547 .. 19588885 (-)
RNA-Seq Expression	Sed0011766
Synteny	Sed0011766

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCTTTGTTTCGGCCAATCTCCCGCGAGTCGACGCTCATCGTGCCGCGAGCCTTGTTAATTTGCACAATCATGACTGGCATAACCATCAACATCGGCAACATCATCGCGAAGGAGATTCGCGAGTGGAAGAGGCGAAAGGCGAGCTACATGCTTTTCCCTCACTCCATCTCAGCGTTATGCCAGAACCAAGGGCTAGTAGGCCGACCAAGCGACCCATTTTTGTCGAACAAGAGATACCTGAATTTCACTCCAAAGGCTCAAAAGAGAGGAGCTCGCGCAGCGAAGAAGACCCTCGCATCTACCTCAACGAACAACGAACAACGAGCAACTTGA

mRNA sequence

ATGAAGTCTTTGTTTCGGCCAATCTCCCGCGAGTCGACGCTCATCGTGCCGCGAGCCTTGTTAATTTGCACAATCATGACTGGCATAACCATCAACATCGGCAACATCATCGCGAAGGAGATTCGCGAGTGGAAGAGGCGAAAGGCGAGCTACATGCTTTTCCCTCACTCCATCTCAGCGTTATGCCAGAACCAAGGGCTAGTAGGCCGACCAAGCGACCCATTTTTGTCGAACAAGAGATACCTGAATTTCACTCCAAAGGCTCAAAAGAGAGGAGCTCGCGCAGCGAAGAAGACCCTCGCATCTACCTCAACGAACAACGAACAACGAGCAACTTGA

Coding sequence (CDS)

ATGAAGTCTTTGTTTCGGCCAATCTCCCGCGAGTCGACGCTCATCGTGCCGCGAGCCTTGTTAATTTGCACAATCATGACTGGCATAACCATCAACATCGGCAACATCATCGCGAAGGAGATTCGCGAGTGGAAGAGGCGAAAGGCGAGCTACATGCTTTTCCCTCACTCCATCTCAGCGTTATGCCAGAACCAAGGGCTAGTAGGCCGACCAAGCGACCCATTTTTGTCGAACAAGAGATACCTGAATTTCACTCCAAAGGCTCAAAAGAGAGGAGCTCGCGCAGCGAAGAAGACCCTCGCATCTACCTCAACGAACAACGAACAACGAGCAACTTGA

Protein sequence

MKSLFRPISRESTLIVPRALLICTIMTGITINIGNIIAKEIREWKRRKASYMLFPHSISALCQNQGLVGRPSDPFLSNKRYLNFTPKAQKRGARAAKKTLASTSTNNEQRAT

Homology

[Close]

BLAST of Sed0011766 vs. ExPASy TrEMBL
Match: A0A7J9CYK2 (Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_020800 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.0e-04
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 7   PISRESTLIVPRALLICTIMTGITINIGNIIAKEIREWKRRKASYMLFPHSISALC 63
           PIS  ST+ + R  L+  IMT  +INIG II KEI +  R+K  Y  FP  I++LC
Sbjct: 82  PISHSSTISIERIFLLYAIMTERSINIGKIILKEIHDCARKKTIYAYFPSLITSLC 137

The following BLAST results are available for this feature:

BLAST of Sed0011766 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0011766 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0011766 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9CYK2	5.0e-04	48.21	Uncharacterized protein OS=Gossypium gossypioides OX=34282 GN=Gogos_020800 PE=4 ...	[more]

BLAST of Sed0011766 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0011766.1	Sed0011766.1	mRNA