Sed0011738 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAAAGCAACGCCCATTTCTCTCTCTCTCTAACTTTCTCTCTCTTCTTTCTCTGCAAAACAAAAATGGCCGCCGAAGTAAGTTCGCTGGTGCGAATTCTGACAGGCTACAACAAAGACGACCGTCATCGGACGGCGGGAAACGAATCTGGGTCGGAGAAATTAACGCCTCTGATCACCCGAGACTTGCTCAACGGCGGCTACTCCAAATTTACAGAGCCCCAAGAGTTAGACCTCGACCAAAAAGTCCCTTCCGGCTGGGAAAAAAAACTCGATTTGAAGGTACCCATTTTTTCAATTTCTCTGTTCTTTAAATCCCAATTTTGGGTTTTTTTTCTTTTGTTTTGTTTTGGGGTTTAATTGGTTCAATTTTGAATTGTTTCAGTCAGGCAAAATGTTTGTTCAACGATGCAGTGTTCGAGATTTCAACAATCAAACAGTGTCGAAGCTTCAAGATTTGAACTTTCCGCCGTCGCCCAATTACTCAAAATTCGACGAAACCAGTTTGGATTTGAAATTGGTTTCGTCGCCGTCGTGTCGGAGTAACTATCAGAGTGTTTGTACTTTGGATAAGGTCAAATCGGCGCTTGAACGGGCGGAGAAAAACCCCATCAGAAAACGGTCGTCGTTGTGGAAATCGTCGCCGTCGCCGTCTTATTCGTCGTCGTCGTCGTCAGCGGCGGCGAGAGAGTTTCAAGAAGAGGATAATTTGAGATCCCTCTCGTCGGCGGCTCCGATCGCCGCCGGCTGCCCTGGTTGTTTGTCGTATGTGTTGGTGATGAAGAACAATCCGACGTGTCCCCGGTGTAGCTCCGTCGTGACGTTGCCGGCGGCGAAGAAACCTCGGATTGATCTAAACATTTCGATTTGATTGAGTGAGGGGAAAATTATTGTTGTTGTAGATGGAGGGACAGAAATGATCAGCTTCAAGACATAGATTTCTTTGTTTTTTTTTTTGGTAGTTGTAGAAACTATATGTAAAAAAAAATGCAAAATGTATGGTGAGGATTTCAATTCTTATTAAGATTTTATATATCATAATTTTATCTCTTAATTATATATTACTTTTTATTTTAA GAAAAGCAACGCCCATTTCTCTCTCTCTCTAACTTTCTCTCTCTTCTTTCTCTGCAAAACAAAAATGGCCGCCGAAGTAAGTTCGCTGGTGCGAATTCTGACAGGCTACAACAAAGACGACCGTCATCGGACGGCGGGAAACGAATCTGGGTCGGAGAAATTAACGCCTCTGATCACCCGAGACTTGCTCAACGGCGGCTACTCCAAATTTACAGAGCCCCAAGAGTTAGACCTCGACCAAAAAGTCCCTTCCGGCTGGGAAAAAAAACTCGATTTGAAGTCAGGCAAAATGTTTGTTCAACGATGCAGTGTTCGAGATTTCAACAATCAAACAGTGTCGAAGCTTCAAGATTTGAACTTTCCGCCGTCGCCCAATTACTCAAAATTCGACGAAACCAGTTTGGATTTGAAATTGGTTTCGTCGCCGTCGTGTCGGAGTAACTATCAGAGTGTTTGTACTTTGGATAAGGTCAAATCGGCGCTTGAACGGGCGGAGAAAAACCCCATCAGAAAACGGTCGTCGTTGTGGAAATCGTCGCCGTCGCCGTCTTATTCGTCGTCGTCGTCGTCAGCGGCGGCGAGAGAGTTTCAAGAAGAGGATAATTTGAGATCCCTCTCGTCGGCGGCTCCGATCGCCGCCGGCTGCCCTGGTTGTTTGTCGTATGTGTTGGTGATGAAGAACAATCCGACGTGTCCCCGGTGTAGCTCCGTCGTGACGTTGCCGGCGGCGAAGAAACCTCGGATTGATCTAAACATTTCGATTTGATTGAGTGAGGGGAAAATTATTGTTGTTGTAGATGGAGGGACAGAAATGATCAGCTTCAAGACATAGATTTCTTTGTTTTTTTTTTTGGTAGTTGTAGAAACTATATGTAAAAAAAAATGCAAAATGTATGGTGAGGATTTCAATTCTTATTAAGATTTTATATATCATAATTTTATCTCTTAATTATATATTACTTTTTATTTTAA ATGGCCGCCGAAGTAAGTTCGCTGGTGCGAATTCTGACAGGCTACAACAAAGACGACCGTCATCGGACGGCGGGAAACGAATCTGGGTCGGAGAAATTAACGCCTCTGATCACCCGAGACTTGCTCAACGGCGGCTACTCCAAATTTACAGAGCCCCAAGAGTTAGACCTCGACCAAAAAGTCCCTTCCGGCTGGGAAAAAAAACTCGATTTGAAGTCAGGCAAAATGTTTGTTCAACGATGCAGTGTTCGAGATTTCAACAATCAAACAGTGTCGAAGCTTCAAGATTTGAACTTTCCGCCGTCGCCCAATTACTCAAAATTCGACGAAACCAGTTTGGATTTGAAATTGGTTTCGTCGCCGTCGTGTCGGAGTAACTATCAGAGTGTTTGTACTTTGGATAAGGTCAAATCGGCGCTTGAACGGGCGGAGAAAAACCCCATCAGAAAACGGTCGTCGTTGTGGAAATCGTCGCCGTCGCCGTCTTATTCGTCGTCGTCGTCGTCAGCGGCGGCGAGAGAGTTTCAAGAAGAGGATAATTTGAGATCCCTCTCGTCGGCGGCTCCGATCGCCGCCGGCTGCCCTGGTTGTTTGTCGTATGTGTTGGTGATGAAGAACAATCCGACGTGTCCCCGGTGTAGCTCCGTCGTGACGTTGCCGGCGGCGAAGAAACCTCGGATTGATCTAAACATTTCGATTTGA MAAEVSSLVRILTGYNKDDRHRTAGNESGSEKLTPLITRDLLNGGYSKFTEPQELDLDQKVPSGWEKKLDLKSGKMFVQRCSVRDFNNQTVSKLQDLNFPPSPNYSKFDETSLDLKLVSSPSCRSNYQSVCTLDKVKSALERAEKNPIRKRSSLWKSSPSPSYSSSSSSAAAREFQEEDNLRSLSSAAPIAAGCPGCLSYVLVMKNNPTCPRCSSVVTLPAAKKPRIDLNISI Homology
BLAST of Sed0011738 vs. NCBI nr
Match: XP_038901828.1 (uncharacterized protein LOC120088523 [Benincasa hispida]) HSP 1 Score: 376.3 bits (965), Expect = 1.9e-100 Identity = 202/249 (81.12%), Postives = 219/249 (87.95%), Query Frame = 0
BLAST of Sed0011738 vs. NCBI nr
Match: XP_004140015.1 (uncharacterized protein LOC101202760 [Cucumis sativus] >KGN46805.1 hypothetical protein Csa_021089 [Cucumis sativus]) HSP 1 Score: 374.0 bits (959), Expect = 9.3e-100 Identity = 203/250 (81.20%), Postives = 218/250 (87.20%), Query Frame = 0
BLAST of Sed0011738 vs. NCBI nr
Match: XP_008456306.1 (PREDICTED: uncharacterized protein LOC103496294 [Cucumis melo] >KAA0054671.1 putative YUP8H12R.23 protein [Cucumis melo var. makuwa] >TYK08600.1 putative YUP8H12R.23 protein [Cucumis melo var. makuwa]) HSP 1 Score: 372.9 bits (956), Expect = 2.1e-99 Identity = 202/250 (80.80%), Postives = 218/250 (87.20%), Query Frame = 0
BLAST of Sed0011738 vs. NCBI nr
Match: XP_022970865.1 (uncharacterized protein LOC111469711 [Cucurbita maxima]) HSP 1 Score: 348.6 bits (893), Expect = 4.2e-92 Identity = 193/256 (75.39%), Postives = 208/256 (81.25%), Query Frame = 0
BLAST of Sed0011738 vs. NCBI nr
Match: XP_022947770.1 (uncharacterized protein LOC111451530 isoform X1 [Cucurbita moschata] >KAG6604706.1 hypothetical protein SDJN03_02023, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 343.2 bits (879), Expect = 1.8e-90 Identity = 191/257 (74.32%), Postives = 206/257 (80.16%), Query Frame = 0
BLAST of Sed0011738 vs. ExPASy TrEMBL
Match: A0A0A0KAN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G137580 PE=4 SV=1) HSP 1 Score: 374.0 bits (959), Expect = 4.5e-100 Identity = 203/250 (81.20%), Postives = 218/250 (87.20%), Query Frame = 0
BLAST of Sed0011738 vs. ExPASy TrEMBL
Match: A0A5D3CB81 (Putative YUP8H12R.23 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00220 PE=4 SV=1) HSP 1 Score: 372.9 bits (956), Expect = 1.0e-99 Identity = 202/250 (80.80%), Postives = 218/250 (87.20%), Query Frame = 0
BLAST of Sed0011738 vs. ExPASy TrEMBL
Match: A0A1S3C2I3 (uncharacterized protein LOC103496294 OS=Cucumis melo OX=3656 GN=LOC103496294 PE=4 SV=1) HSP 1 Score: 372.9 bits (956), Expect = 1.0e-99 Identity = 202/250 (80.80%), Postives = 218/250 (87.20%), Query Frame = 0
BLAST of Sed0011738 vs. ExPASy TrEMBL
Match: A0A6J1I433 (uncharacterized protein LOC111469711 OS=Cucurbita maxima OX=3661 GN=LOC111469711 PE=4 SV=1) HSP 1 Score: 348.6 bits (893), Expect = 2.0e-92 Identity = 193/256 (75.39%), Postives = 208/256 (81.25%), Query Frame = 0
BLAST of Sed0011738 vs. ExPASy TrEMBL
Match: A0A6J1G7U1 (uncharacterized protein LOC111451530 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451530 PE=4 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 8.5e-91 Identity = 191/257 (74.32%), Postives = 206/257 (80.16%), Query Frame = 0
BLAST of Sed0011738 vs. TAIR 10
Match: AT1G79160.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 198.0 bits (502), Expect = 8.5e-51 Identity = 129/254 (50.79%), Postives = 164/254 (64.57%), Query Frame = 0
BLAST of Sed0011738 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 169.1 bits (427), Expect = 4.2e-42 Identity = 124/279 (44.44%), Postives = 153/279 (54.84%), Query Frame = 0
BLAST of Sed0011738 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.1 bits (100), Expect = 3.5e-04 Identity = 24/62 (38.71%), Postives = 39/62 (62.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|